Wdr19 (WD repeat domain 19) - Rat Genome Database

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Gene: Wdr19 (WD repeat domain 19) Mus musculus
Analyze
Symbol: Wdr19
Name: WD repeat domain 19
RGD ID: 1549987
MGI Page MGI
Description: Acts upstream of or within several processes, including chordate embryonic development; embryonic organ development; and myotome development. Located in motile cilium and photoreceptor connecting cilium. Part of intraciliary transport particle A. Is expressed in several structures, including alimentary system; genitourinary system; hemolymphoid system gland; liver; and lung. Used to study ciliopathy. Human ortholog(s) of this gene implicated in several diseases, including Caroli disease; Senior-Loken syndrome; asphyxiating thoracic dystrophy 5; cranioectodermal dysplasia 4; and nephronophthisis 13. Orthologous to human WDR19 (WD repeat domain 19).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C330027H04Rik; D330023L08Rik; DYF2; Ift14; Ift144; intraflagellar transport 144 homolog; mKIAA1638; PWDMP; WD repeat membrane protein PWDMP; WD repeat-containing protein 19
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,357,039 - 65,417,758 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl565,357,039 - 65,417,758 (+)EnsemblGRCm39 Ensembl
GRCm38565,199,696 - 65,260,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,199,696 - 65,260,415 (+)EnsemblGRCm38mm10GRCm38
MGSCv37565,590,935 - 65,651,654 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36565,478,847 - 65,539,550 (+)NCBIMGSCv36mm8
Celera562,476,346 - 62,537,628 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.58NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mutations in mouse Ift144 model the craniofacial, limb and rib defects in skeletal ciliopathies. Ashe A, etal., Hum Mol Genet. 2012 Apr 15;21(8):1808-23. doi: 10.1093/hmg/ddr613. Epub 2012 Jan 6.
2. Ciliopathies with skeletal anomalies and renal insufficiency due to mutations in the IFT-A gene WDR19. Bredrup C, etal., Am J Hum Genet. 2011 Nov 11;89(5):634-43. doi: 10.1016/j.ajhg.2011.10.001. Epub 2011 Oct 20.
3. WDR19: an ancient, retrograde, intraflagellar ciliary protein is mutated in autosomal recessive retinitis pigmentosa and in Senior-Loken syndrome. Coussa RG, etal., Clin Genet. 2013 Aug;84(2):150-9. doi: 10.1111/cge.12196.
4. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
5. Nephronophthisis 13: implications of its association with Caroli disease and altered intracellular localization of WDR19 in the kidney. Lee JM, etal., Pediatr Nephrol. 2015 Sep;30(9):1451-8. doi: 10.1007/s00467-015-3068-8. Epub 2015 Mar 1.
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. Hepatorenal fibrocystic diseases in children. Park E, etal., Pediatr Nephrol. 2016 Jan;31(1):113-9. doi: 10.1007/s00467-015-3185-4. Epub 2015 Aug 11.
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12906858   PMID:14621295   PMID:15489334   PMID:15890782   PMID:16141072   PMID:16141073   PMID:16957054  
PMID:19208653   PMID:20889716   PMID:21267068   PMID:21873635   PMID:22689656   PMID:22922713   PMID:25224227   PMID:27806291   PMID:32317081   PMID:32325033   PMID:34161765   PMID:35007346  


Genomics

Comparative Map Data
Wdr19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,357,039 - 65,417,758 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl565,357,039 - 65,417,758 (+)EnsemblGRCm39 Ensembl
GRCm38565,199,696 - 65,260,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,199,696 - 65,260,415 (+)EnsemblGRCm38mm10GRCm38
MGSCv37565,590,935 - 65,651,654 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36565,478,847 - 65,539,550 (+)NCBIMGSCv36mm8
Celera562,476,346 - 62,537,628 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.58NCBI
WDR19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38439,182,529 - 39,285,810 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl439,182,504 - 39,285,810 (+)EnsemblGRCh38hg38GRCh38
GRCh37439,184,149 - 39,287,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36438,860,419 - 38,963,825 (+)NCBINCBI36Build 36hg18NCBI36
Build 34439,006,589 - 39,109,995NCBI
Celera439,621,888 - 39,725,263 (+)NCBICelera
Cytogenetic Map4p14NCBI
HuRef438,508,923 - 38,612,720 (+)NCBIHuRef
CHM1_1439,183,560 - 39,287,052 (+)NCBICHM1_1
T2T-CHM13v2.0439,152,167 - 39,255,444 (+)NCBIT2T-CHM13v2.0
Wdr19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81443,396,130 - 43,460,012 (-)NCBIGRCr8
mRatBN7.21443,042,474 - 43,106,337 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1443,042,478 - 43,106,288 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1443,398,120 - 43,460,461 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01444,698,061 - 44,760,412 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01443,178,194 - 43,240,550 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01444,705,012 - 44,767,120 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,705,012 - 44,767,120 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01444,519,192 - 44,580,950 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41445,744,198 - 45,807,441 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11445,744,874 - 45,809,905 (-)NCBI
Celera1442,187,689 - 42,251,374 (-)NCBICelera
Cytogenetic Map14p11NCBI
Wdr19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554438,053,847 - 8,123,110 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554438,053,847 - 8,122,918 (-)NCBIChiLan1.0ChiLan1.0
WDR19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2339,371,162 - 39,477,207 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1439,563,751 - 39,669,617 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0433,511,283 - 33,616,946 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1439,365,204 - 39,470,074 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl439,365,276 - 39,462,903 (+)Ensemblpanpan1.1panPan2
WDR19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1373,115,560 - 73,213,823 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl373,137,250 - 73,221,512 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha375,617,214 - 75,774,265 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0373,844,096 - 74,001,187 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl373,908,855 - 74,001,228 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1373,110,186 - 73,267,232 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0373,302,684 - 73,413,870 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0373,643,183 - 73,800,247 (-)NCBIUU_Cfam_GSD_1.0
Wdr19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528539,361,717 - 39,434,642 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364826,863,571 - 6,937,979 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364826,863,592 - 6,937,810 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl830,463,862 - 30,553,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1830,453,969 - 30,553,699 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2832,078,753 - 32,168,583 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12711,019,897 - 11,113,760 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2711,018,827 - 11,113,666 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604757,431,811 - 57,525,579 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248407,624,687 - 7,699,997 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248407,624,744 - 7,702,283 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:136
Count of miRNA genes:129
Interacting mature miRNAs:134
Transcripts:ENSMUST00000041892
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
14746981Manh57_mmandible shape 57 (mouse)54716974281169742Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54458584378585965Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6265056896650688Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54632260680322606Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54632260680322606Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56437487798374996Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55564587489645995Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56265056896650688Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56265056896650688Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56040306294403160Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55833050292330641Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse

Markers in Region
UniSTS:235183  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38565,260,001 - 65,260,281UniSTSGRCm38
MGSCv37565,651,240 - 65,651,520UniSTSGRCm37
Celera562,537,214 - 62,537,494UniSTS
Cytogenetic Map5C3.1UniSTS
UniSTS:235184  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38565,259,390 - 65,259,612UniSTSGRCm38
MGSCv37565,650,629 - 65,650,851UniSTSGRCm37
Celera562,536,603 - 62,536,825UniSTS
Cytogenetic Map5C3.1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000041892   ⟹   ENSMUSP00000038098
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,357,041 - 65,417,758 (+)Ensembl
GRCm38.p6 Ensembl565,199,698 - 65,260,415 (+)Ensembl
Ensembl Acc Id: ENSMUST00000203359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,359,958 - 65,417,753 (+)Ensembl
GRCm38.p6 Ensembl565,202,615 - 65,260,410 (+)Ensembl
Ensembl Acc Id: ENSMUST00000203554   ⟹   ENSMUSP00000144826
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,413,768 - 65,417,752 (+)Ensembl
GRCm38.p6 Ensembl565,256,425 - 65,260,409 (+)Ensembl
Ensembl Acc Id: ENSMUST00000203653   ⟹   ENSMUSP00000144866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,357,039 - 65,417,749 (+)Ensembl
GRCm38.p6 Ensembl565,199,696 - 65,260,406 (+)Ensembl
Ensembl Acc Id: ENSMUST00000203676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,357,074 - 65,388,597 (+)Ensembl
GRCm38.p6 Ensembl565,199,731 - 65,231,254 (+)Ensembl
Ensembl Acc Id: ENSMUST00000204375
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,357,083 - 65,381,886 (+)Ensembl
GRCm38.p6 Ensembl565,199,740 - 65,224,543 (+)Ensembl
Ensembl Acc Id: ENSMUST00000204582
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,357,043 - 65,362,657 (+)Ensembl
GRCm38.p6 Ensembl565,199,700 - 65,205,314 (+)Ensembl
Ensembl Acc Id: ENSMUST00000204647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,357,060 - 65,401,929 (+)Ensembl
GRCm38.p6 Ensembl565,199,717 - 65,244,586 (+)Ensembl
RefSeq Acc Id: NM_001359879   ⟹   NP_001346808
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39565,357,039 - 65,416,746 (+)NCBI
GRCm38565,199,696 - 65,259,403 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359880   ⟹   NP_001346809
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39565,357,039 - 65,401,929 (+)NCBI
GRCm38565,199,696 - 65,244,586 (+)NCBI
Sequence:
RefSeq Acc Id: NM_153391   ⟹   NP_700440
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39565,357,039 - 65,417,758 (+)NCBI
GRCm38565,199,696 - 65,260,415 (+)NCBI
MGSCv37565,590,935 - 65,651,654 (+)RGD
Celera562,476,346 - 62,537,628 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_700440   ⟸   NM_153391
- Peptide Label: isoform a
- UniProtKB: Q8C794 (UniProtKB/Swiss-Prot),   Q80VQ6 (UniProtKB/Swiss-Prot),   Q6ZPK8 (UniProtKB/Swiss-Prot),   Q8K3R5 (UniProtKB/Swiss-Prot),   Q3UGF1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001346808   ⟸   NM_001359879
- Peptide Label: isoform a
- UniProtKB: Q8C794 (UniProtKB/Swiss-Prot),   Q80VQ6 (UniProtKB/Swiss-Prot),   Q6ZPK8 (UniProtKB/Swiss-Prot),   Q3UGF1 (UniProtKB/Swiss-Prot),   Q8K3R5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001346809   ⟸   NM_001359880
- Peptide Label: isoform a
Ensembl Acc Id: ENSMUSP00000144826   ⟸   ENSMUST00000203554
Ensembl Acc Id: ENSMUSP00000144866   ⟸   ENSMUST00000203653
Ensembl Acc Id: ENSMUSP00000038098   ⟸   ENSMUST00000041892
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UGF1-F1-model_v2 AlphaFold Q3UGF1 1-1341 view protein structure

Promoters
RGD ID:6886760
Promoter ID:EPDNEW_M6831
Type:multiple initiation site
Name:Wdr19_1
Description:Mus musculus WD repeat domain 19 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38565,199,717 - 65,199,777EPDNEW
RGD ID:6838633
Promoter ID:MM_KWN:42374
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_153391,   UC008XND.1,   UC008XNE.1,   UC008XNF.1,   UC008XNG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,590,589 - 65,591,089 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443231 AgrOrtholog
Ensembl Genes ENSMUSG00000037890 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000041892 ENTREZGENE
  ENSMUST00000041892.13 UniProtKB/Swiss-Prot
  ENSMUST00000203554.2 UniProtKB/TrEMBL
  ENSMUST00000203653 ENTREZGENE
  ENSMUST00000203653.3 UniProtKB/Swiss-Prot
  ENSMUST00000204647 ENTREZGENE
Gene3D-CATH 1.25.40.470 UniProtKB/Swiss-Prot
  2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Apc4-like_WD40_dom UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WDR19/dyf-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WDR19_WD40_rpt UniProtKB/Swiss-Prot
KEGG Report mmu:213081 UniProtKB/Swiss-Prot
MGD MGI:2443231 ENTREZGENE
NCBI Gene 213081 ENTREZGENE
PANTHER PTHR14920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ANAPC4_WD40 UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_3 UniProtKB/Swiss-Prot
PhenoGen Wdr19 PhenoGen
PROSITE WD_REPEATS_REGION UniProtKB/Swiss-Prot
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP DPP6 N-terminal domain-like UniProtKB/Swiss-Prot
  SSF48452 UniProtKB/Swiss-Prot
  Tricorn protease domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SUU5_MOUSE UniProtKB/TrEMBL
  Q3UGF1 ENTREZGENE
  Q6ZPK8 ENTREZGENE
  Q80VQ6 ENTREZGENE
  Q8BRP0_MOUSE UniProtKB/TrEMBL
  Q8C794 ENTREZGENE
  Q8K3R5 ENTREZGENE
  WDR19_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q6ZPK8 UniProtKB/Swiss-Prot
  Q80VQ6 UniProtKB/Swiss-Prot
  Q8C794 UniProtKB/Swiss-Prot
  Q8K3R5 UniProtKB/Swiss-Prot