AABR07028748.1 (null) - Rat Genome Database

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Gene: AABR07028748.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07028748.1
Name:
RGD ID: 15003827
Description: Predicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity. Predicted to be involved in glycolytic process. Predicted to be located in cytoskeleton and nucleus. Predicted to be active in cytosol.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1780,588,823 - 80,589,694 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1784,613,105 - 84,614,228 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoskeleton  (IEA)
cytosol  (IBA,IEA)
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:14
Count of miRNA genes:13
Interacting mature miRNAs:13
Transcripts:ENSRNOT00000043042
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
7 11 36 67 63 61 31 25 31 6 151 84 47 21 39 30

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENSRNOT00000043042   ⟹   ENSRNOP00000044449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1780,588,823 - 80,589,694 (-)Ensembl
Rnor_6.0 Ensembl1784,613,105 - 84,614,228 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000044449.5
Ensembl Acc Id: ENSRNOP00000044449   ⟸   ENSRNOT00000043042
Protein Domains
Glyceraldehyde 3-phosphate dehydrogenase NAD(P)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M269-F1-model_v2 AlphaFold F1M269 1-258 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000030638 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043042.5 UniProtKB/TrEMBL
Gene3D-CATH Dihydrodipicolinate Reductase, domain 2 UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro GlycerAld/Erythrose_P_DH UniProtKB/TrEMBL
  GlycerAld_3-P_DH_AS UniProtKB/TrEMBL
  GlycerAld_3-P_DH_cat UniProtKB/TrEMBL
  GlycerAld_3-P_DH_NAD(P)-bd UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE UniProtKB/TrEMBL
  PTHR10836 UniProtKB/TrEMBL
Pfam Gp_dh_C UniProtKB/TrEMBL
PhenoGen AABR07028748.1 PhenoGen
PRINTS G3PDHDRGNASE UniProtKB/TrEMBL
PROSITE GAPDH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030638 RatGTEx
SMART Gp_dh_N UniProtKB/TrEMBL
Superfamily-SCOP Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt F1M269_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07028748.1        Symbol and Name status set to provisional 45752 PROVISIONAL