AC128848.1 (null) - Rat Genome Database

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Gene: AC128848.1 (null) Rattus norvegicus
Analyze
Symbol: AC128848.1
Name:
RGD ID: 15003619
Description:
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1911,302,125 - 11,302,938 (-)EnsemblRnor6.0rn6Rnor6.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:68
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000038212
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 6 49 113 91 90 59 25 59 6 213 97 93 45 60 31

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENSRNOT00000038212   ⟹   ENSRNOP00000030623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1910,826,032 - 10,827,049 (-)Ensembl
Rnor_6.0 Ensembl1911,302,125 - 11,302,938 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000030623
Ensembl Acc Id: ENSRNOP00000030623   ⟸   ENSRNOT00000038212

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000025764 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038212 UniProtKB/TrEMBL
Gene3D-CATH Metallothionein Isoform II UniProtKB/TrEMBL
InterPro Metalthion_dom_sf UniProtKB/TrEMBL
  Metalthion_dom_sf_vert UniProtKB/TrEMBL
  Metalthion_vert UniProtKB/TrEMBL
  Metalthion_vert_metal_BS UniProtKB/TrEMBL
PANTHER METALLOTHIONEIN UniProtKB/TrEMBL
  METALLOTHIONEIN-1X UniProtKB/TrEMBL
Pfam Metallothio UniProtKB/TrEMBL
PhenoGen AC128848.1 PhenoGen
PROSITE METALLOTHIONEIN_VRT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000025764 RatGTEx
Superfamily-SCOP Metallothionein UniProtKB/TrEMBL
UniProt A0A0H2UHT7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AC128848.1        Symbol and Name status set to provisional 45752 PROVISIONAL