AABR07006691.1 (null) - Rat Genome Database

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Gene: AABR07006691.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07006691.1
Name:
RGD ID: 15003377
Description: Predicted to enable D-mannose binding activity. Predicted to be involved in complement activation, classical pathway and complement activation, lectin pathway. Predicted to be located in extracellular space. Predicted to be part of collagen trimer.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1228,016,498 - 228,043,066 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1248,428,099 - 248,463,139 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:83
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000050984
Prediction methods:Microtar, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 6 30 76 72 59 6 59 6 94 25 17 4 19 13

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENSRNOT00000050984   ⟹   ENSRNOP00000047103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1228,016,498 - 228,043,066 (+)Ensembl
Rnor_6.0 Ensembl1248,428,099 - 248,463,139 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000047103.6
Ensembl Acc Id: ENSRNOP00000047103   ⟸   ENSRNOT00000050984
Protein Domains
C-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A140UHW8-F1-model_v2 AlphaFold A0A140UHW8 1-371 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000011637 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050984.6 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
  6-Phosphogluconate Dehydrogenase, domain 3 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  Ca-dependent_lectin UniProtKB/TrEMBL
  Collagen UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
PANTHER PTHR24024:SF34 UniProtKB/TrEMBL
  PULMONARY SURFACTANT-ASSOCIATED PROTEIN A UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
  Lectin_C UniProtKB/TrEMBL
PhenoGen AABR07006691.1 PhenoGen
RatGTEx ENSRNOG00000011637 RatGTEx
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt Q7TMC0_RAT UniProtKB/TrEMBL
UniProt Secondary A0A140UHW8 UniProtKB/TrEMBL
  F8WFQ8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07006691.1        Symbol and Name status set to provisional 45752 PROVISIONAL