AC126899.1 (null) - Rat Genome Database

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Gene: AC126899.1 (null) Rattus norvegicus
Analyze
Symbol: AC126899.1
Name:
RGD ID: 15003367
Description: Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in membrane. Predicted to be part of Lsm1-7-Pat1 complex and nucleus. Predicted to be active in P-body.
Type: protein-coding
Latest Assembly: GRCr8 Ensembl - GRCr8 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1940,146,975 - 40,147,500 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1944,396,248 - 44,396,610 (-)EnsemblRnor6.0rn6Rnor6.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
RNA binding  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:147
Count of miRNA genes:116
Interacting mature miRNAs:123
Transcripts:ENSRNOT00000014753
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
ectoderm
endocrine system
endoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
2 1 3 3 1 1 1 5 3 1 7 1

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENSRNOT00000014753   ⟹   ENSRNOP00000072528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1940,146,975 - 40,147,500 (-)Ensembl
Rnor_6.0 Ensembl1944,396,248 - 44,396,610 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000072528.2
Ensembl Acc Id: ENSRNOP00000072528   ⟸   ENSRNOT00000014753
Protein Domains
Sm

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K375-F1-model_v2 AlphaFold A0A0G2K375 1-70 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000011065 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014753.8 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  U6_snRNA_Lsm2 UniProtKB/TrEMBL
PANTHER PTHR13829 UniProtKB/TrEMBL
  U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM2 UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PhenoGen AC126899.1 PhenoGen
PROSITE PS52002 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011065 RatGTEx
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt A0A0G2K375_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AC126899.1        Symbol and Name status set to provisional 45752 PROVISIONAL