AABR07038250.1 (null) - Rat Genome Database

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Gene: AABR07038250.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07038250.1
Name:
RGD ID: 15003268
Description:
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 EnsemblX40,572,009 - 40,572,728 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 EnsemblX43,831,892 - 43,832,515 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:77
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000005120
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
5 9 18 88 41 33 29 7 29 2 112 36 76 34 45 4

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENSRNOT00000005120   ⟹   ENSRNOP00000067748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX40,572,009 - 40,572,728 (+)Ensembl
Rnor_6.0 EnsemblX43,831,892 - 43,832,515 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000067748.2
Ensembl Acc Id: ENSRNOP00000067748   ⟸   ENSRNOT00000005120

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RDP3-F1-model_v2 AlphaFold M0RDP3 1-208 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000003860 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005120.6 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro Ca-Reg_Muscle_Contr_Cell_Proc UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
PANTHER MYOSIN LIGHT CHAIN 1, 3 UniProtKB/TrEMBL
  MYOSIN LIGHT CHAIN 6B UniProtKB/TrEMBL
PhenoGen AABR07038250.1 PhenoGen
RatGTEx ENSRNOG00000003860 RatGTEx
Superfamily-SCOP EF-hand UniProtKB/TrEMBL
UniProt M0RDP3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07038250.1        Symbol and Name status set to provisional 45752 PROVISIONAL