BDNF (brain derived neurotrophic factor) - Rat Genome Database

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Advanced Search (OLGA)
Gene: BDNF (brain derived neurotrophic factor) Sus scrofa
Analyze
Symbol: BDNF
Name: brain derived neurotrophic factor
RGD ID: 14295096
Description: ENCODES a protein that exhibits neurotrophin TRKB receptor binding (ortholog); INVOLVED IN axon extension (ortholog); axon guidance (ortholog); axon target recognition (ortholog); PARTICIPATES IN brain-derived neurotrophic factor signaling pathway; ASSOCIATED WITH acoustic neuroma (ortholog); acute stress disorder (ortholog); alcohol dependence (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: brain-derived neurotrophic factor; neurotrophic factor BDNF precursor form; proBDNF
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl232,624,048 - 32,679,765 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1232,623,668 - 32,679,293 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2235,206,996 - 35,265,002 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
acoustic neuroma  (ISO)
acute stress disorder  (ISO)
alcohol dependence  (ISO)
alcohol use disorder  (ISO)
alcohol withdrawal syndrome  (ISO)
Alcohol-Related Disorders  (ISO)
Alcoholic Intoxication  (ISO)
alopecia  (ISO)
Alzheimer's disease  (ISO)
amnestic disorder  (ISO)
amphetamine abuse  (ISO)
Amyloid Plaques  (ISO)
Anhedonia  (ISO)
anxiety disorder  (ISO)
Arthralgia  (ISO)
asthma  (ISO)
Ataxia  (ISO)
atopic dermatitis  (ISO)
attention deficit hyperactivity disorder  (ISO)
autism spectrum disorder  (ISO)
autistic disorder  (ISO)
bacterial meningitis  (ISO)
Binge Drinking  (ISO)
bipolar disorder  (ISO)
Body Weight  (ISO)
borna disease  (ISO)
Brain Injuries  (ISO)
brain ischemia  (ISO)
cannabis abuse  (ISO)
Cerebral Hemorrhage  (ISO)
Chronic Pain  (ISO)
cocaine abuse  (ISO)
cocaine dependence  (ISO)
Cocaine-Related Disorders  (ISO)
cognitive disorder  (ISO)
colitis  (ISO)
color blindness  (ISO)
congenital central hypoventilation syndrome  (ISO)
cystitis  (ISO)
Deafness  (ISO)
depressive disorder  (ISO)
Diabetic Nephropathies  (ISO)
diabetic neuropathy  (ISO)
diabetic retinopathy  (ISO)
Drug Eruptions  (ISO)
Dysbiosis  (ISO)
epilepsy  (ISO)
epilepsy with generalized tonic-clonic seizures  (ISO)
Experimental Autoimmune Encephalomyelitis  (ISO)
Experimental Diabetes Mellitus  (ISO)
Experimental Seizures  (ISO)
Frontotemporal Lobar Degeneration  (ISO)
genetic disease  (ISO)
glaucoma  (ISO)
Gliosis  (ISO)
Hearing Loss  (ISO)
Hearing Loss, Noise-Induced  (ISO)
heroin dependence  (ISO)
Huntington's disease  (ISO)
Hyperalgesia  (ISO)
Hyperoxia  (ISO)
hypertensive encephalopathy  (ISO)
hypothyroidism  (ISO)
Hypoxia  (ISO)
Inflammation  (ISO)
inner ear disease  (ISO)
intellectual disability  (ISO)
intermediate coronary syndrome  (ISO)
interstitial lung disease  (ISO)
Intervertebral Disc Disease  (ISO)
Intervertebral Disc Displacement  (ISO)
intestinal disease  (ISO)
irritable bowel syndrome  (ISO)
keratoconus  (ISO)
Leukoencephalopathies  (ISO)
low tension glaucoma  (ISO)
major depressive disorder  (ISO)
Memory Disorders  (ISO)
Metabolic Syndrome  (ISO)
middle cerebral artery infarction  (ISO)
mood disorder  (ISO)
morbid obesity  (ISO)
morphine dependence  (ISO)
morphine withdrawal syndrome  (ISO)
multiple sclerosis  (ISO)
Nasal Polyps  (ISO)
neovascular inflammatory vitreoretinopathy  (ISO)
Nerve Degeneration  (ISO)
Nerve Injuries  (ISO)
nervous system disease  (ISO)
nicotine dependence  (ISO)
obesity  (ISO)
obsessive-compulsive disorder  (ISO)
obstructive sleep apnea  (ISO)
opiate dependence  (ISO)
Optic Nerve Injuries  (ISO)
Pain  (ISO)
Parkinson's disease  (ISO)
Parkinsonism  (ISO)
Peripheral Nerve Injuries  (ISO)
post-traumatic stress disorder  (ISO)
Postoperative Cognitive Dysfunction  (ISO)
premature ejaculation  (ISO)
Prenatal Exposure Delayed Effects  (ISO)
Presbycusis  (ISO)
primary open angle glaucoma  (ISO)
psychotic disorder  (ISO)
pulmonary fibrosis  (ISO)
pulmonary sarcoidosis  (ISO)
Radiation Injuries  (ISO)
Referred Pain  (ISO)
Reperfusion Injury  (ISO)
Respiration Disorders  (ISO)
Respiratory Tract Infections  (ISO)
Retina Reperfusion Injury  (ISO)
retinal degeneration  (ISO)
rhinitis  (ISO)
schizophrenia  (ISO)
sciatic neuropathy  (ISO)
Seasonal Allergic Rhinitis  (ISO)
sensorineural hearing loss  (ISO)
Sjogren's syndrome  (ISO)
Sleep Deprivation  (ISO)
Spinal Cord Injuries  (ISO)
Spinal Cord Reperfusion Injury  (ISO)
Starvation  (ISO)
status epilepticus  (ISO)
Stomach Neoplasms  (ISO)
Stroke  (ISO)
systemic scleroderma  (ISO)
Tinnitus  (ISO)
transient cerebral ischemia  (ISO)
traumatic brain injury  (ISO)
trigeminal neuralgia  (ISO)
type 2 diabetes mellitus  (ISO)
urticaria  (ISO)
vascular dementia  (ISO)
Visceral Pain  (ISO)
withdrawal disorder  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
axon extension  (ISO)
axon guidance  (ISO)
axon target recognition  (ISO)
behavioral fear response  (ISO)
behavioral response to cocaine  (ISO)
cell surface receptor protein tyrosine kinase signaling pathway  (IBA)
cellular response to nerve growth factor stimulus  (ISO)
cellular response to norepinephrine stimulus  (ISO)
cellular response to potassium ion  (ISO)
cellular response to tumor necrosis factor  (ISO)
chronic inflammatory response  (ISO)
circadian rhythm  (ISO)
cognition  (ISO)
collateral sprouting  (IEA)
conditioned place preference  (ISO)
dendrite development  (ISO)
dendrite extension  (ISO)
excitatory postsynaptic potential  (ISO)
fear response  (ISO)
feeding behavior  (ISO)
gamma-aminobutyric acid signaling pathway  (ISO)
glutamate secretion  (ISO)
inhibitory postsynaptic potential  (ISO)
inner ear development  (ISO)
learning  (ISO)
learning or memory  (ISO)
mechanoreceptor differentiation  (ISO)
mitochondrial electron transport, NADH to ubiquinone  (ISO)
modulation of chemical synaptic transmission  (IBA)
negative regulation of apoptotic process  (ISO)
negative regulation of apoptotic signaling pathway  (ISO)
negative regulation of myotube differentiation  (ISO)
negative regulation of neuroblast proliferation  (ISO)
negative regulation of neuron apoptotic process  (IBA,ISO)
negative regulation of programmed cell death  (ISO)
negative regulation of striated muscle tissue development  (ISO)
negative regulation of synaptic transmission, GABAergic  (ISO)
nerve development  (IBA,ISO)
nerve growth factor signaling pathway  (IBA)
nervous system development  (ISO)
neuron apoptotic process  (ISO)
neuron projection extension  (ISO)
neuron projection morphogenesis  (IBA)
neuron projection regeneration  (ISO)
neuron recognition  (ISO)
peptidyl-serine phosphorylation  (ISO)
positive regulation of axon extension  (ISO)
positive regulation of axon regeneration  (ISO)
positive regulation of collateral sprouting  (IEA,ISO)
positive regulation of DNA-binding transcription factor activity  (ISO)
positive regulation of long-term neuronal synaptic plasticity  (ISO)
positive regulation of neuron apoptotic process  (ISO)
positive regulation of neuron differentiation  (ISO)
positive regulation of neuron projection development  (ISO)
positive regulation of nuclear receptor-mediated glucocorticoid signaling pathway  (ISO)
positive regulation of peptidyl-serine phosphorylation  (ISO)
positive regulation of synapse assembly  (IEA)
regeneration  (ISO)
regulation of axon extension  (ISO)
regulation of collateral sprouting  (ISO)
regulation of long-term neuronal synaptic plasticity  (ISO)
regulation of neuron apoptotic process  (ISO)
regulation of retinal cell programmed cell death  (ISO)
regulation of short-term neuronal synaptic plasticity  (ISO)
regulation of synaptic plasticity  (ISO)
response to activity  (ISO)
response to anesthetic  (ISO)
response to auditory stimulus  (ISO)
response to electrical stimulus  (ISO)
response to ethanol  (ISO)
response to food  (ISO)
response to hormone  (ISO)
response to hyperoxia  (ISO)
response to hypoxia  (ISO)
response to L-glutamate  (ISO)
response to light intensity  (ISO)
response to light stimulus  (ISO)
response to morphine  (ISO)
response to nerve growth factor  (ISO)
response to nutrient levels  (ISO)
response to potassium ion  (ISO)
response to tumor necrosis factor  (ISO)
response to vitamin A  (ISO)
response to xenobiotic stimulus  (ISO)
signal transduction  (IEA)
synapse assembly  (IEA)
taste bud development  (ISO)
trans-synaptic signaling by BDNF, modulating synaptic transmission  (ISO)
ureteric bud development  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:2779653   PMID:11214319   PMID:14681463   PMID:17145712   PMID:21151608   PMID:22584108   PMID:25146846   PMID:30007130   PMID:30032202  


Genomics

Comparative Map Data
BDNF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl232,624,048 - 32,679,765 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1232,623,668 - 32,679,293 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2235,206,996 - 35,265,002 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BDNF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381127,654,893 - 27,722,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1127,654,893 - 27,722,058 (-)EnsemblGRCh38hg38GRCh38
GRCh371127,676,440 - 27,743,577 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361127,633,016 - 27,699,872 (-)NCBINCBI36Build 36hg18NCBI36
Build 341127,633,019 - 27,637,249NCBI
Celera1127,822,548 - 27,889,725 (-)NCBICelera
Cytogenetic Map11p14.1NCBI
HuRef1127,374,586 - 27,441,772 (-)NCBIHuRef
CHM1_11127,675,184 - 27,742,527 (-)NCBICHM1_1
T2T-CHM13v2.01127,795,301 - 27,862,460 (-)NCBIT2T-CHM13v2.0
Bdnf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392109,505,045 - 109,557,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2109,505,045 - 109,557,352 (+)EnsemblGRCm39 Ensembl
GRCm382109,674,700 - 109,727,043 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2109,674,700 - 109,727,007 (+)EnsemblGRCm38mm10GRCm38
MGSCv372109,514,857 - 109,567,200 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362109,475,539 - 109,527,845 (+)NCBIMGSCv36mm8
Celera2110,835,441 - 110,887,723 (+)NCBICelera
Cytogenetic Map2E3NCBI
cM Map256.63NCBI
Bdnf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83116,619,633 - 116,670,212 (+)NCBIGRCr8
mRatBN7.2396,165,042 - 96,215,621 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl396,165,042 - 96,215,615 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx399,726,226 - 99,776,801 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03108,325,184 - 108,375,759 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03106,087,694 - 106,138,272 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03100,768,637 - 100,819,216 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3100,768,637 - 100,819,210 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03107,371,329 - 107,421,908 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera395,191,318 - 95,241,949 (+)NCBICelera
Cytogenetic Map3q34NCBI
Bdnf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554766,772,088 - 6,822,588 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554766,773,244 - 6,822,201 (-)NCBIChiLan1.0ChiLan1.0
BDNF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2929,867,082 - 29,934,015 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11129,867,593 - 29,934,527 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01127,618,322 - 27,687,661 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11127,520,306 - 27,589,239 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1127,520,312 - 27,589,239 (-)Ensemblpanpan1.1panPan2
BDNF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12148,191,580 - 48,243,699 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2148,192,670 - 48,204,480 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2147,689,871 - 47,691,000 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02149,335,793 - 49,386,964 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12148,338,131 - 48,339,260 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02148,489,388 - 48,490,517 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02149,083,467 - 49,084,596 (-)NCBIUU_Cfam_GSD_1.0
Bdnf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494736,374,992 - 36,427,979 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365405,529,942 - 5,585,014 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365405,530,081 - 5,582,765 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BDNF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1137,386,825 - 37,451,380 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl137,449,593 - 37,450,336 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038134,690,869 - 134,762,531 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bdnf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476617,279,630 - 17,330,490 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476617,281,882 - 17,330,601 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BDNF
1042 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
3 1 21 3 3 8 7 21 4 1

Sequence


Ensembl Acc Id: ENSSSCT00000014561   ⟹   ENSSSCP00000014166
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl232,644,447 - 32,679,129 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000042207   ⟹   ENSSSCP00000046671
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl232,624,048 - 32,679,765 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000053649   ⟹   ENSSSCP00000058570
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl232,625,141 - 32,679,037 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000073803   ⟹   ENSSSCP00000059903
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl232,645,749 - 32,679,029 (+)Ensembl
RefSeq Acc Id: NM_214259   ⟹   NP_999424
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1232,644,661 - 32,679,022 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005654684   ⟹   XP_005654741
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1232,623,668 - 32,679,293 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005654685   ⟹   XP_005654742
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1232,645,627 - 32,679,293 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005654686   ⟹   XP_005654743
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1232,624,821 - 32,679,293 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013987278   ⟹   XP_013842732
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1232,624,825 - 32,679,293 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021081411   ⟹   XP_020937070
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1232,665,790 - 32,679,293 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_999424 (Get FASTA)   NCBI Sequence Viewer  
  XP_005654741 (Get FASTA)   NCBI Sequence Viewer  
  XP_005654742 (Get FASTA)   NCBI Sequence Viewer  
  XP_005654743 (Get FASTA)   NCBI Sequence Viewer  
  XP_013842732 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937070 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG47524 (Get FASTA)   NCBI Sequence Viewer  
  CAA34685 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000014166
  ENSSSCP00000014166.2
  ENSSSCP00000046671
  ENSSSCP00000058570
  ENSSSCP00000058570.1
  ENSSSCP00000059903
  ENSSSCP00000059903.1
  ENSSSCP00015025177.1
  ENSSSCP00015025291.1
  ENSSSCP00015025409.1
  ENSSSCP00025040736.1
  ENSSSCP00025040777.1
  ENSSSCP00025040821.1
  ENSSSCP00030028100.1
  ENSSSCP00030028109.1
  ENSSSCP00030028130.1
  ENSSSCP00035005789.1
  ENSSSCP00035005798.1
  ENSSSCP00035005804.1
  ENSSSCP00045005429.1
  ENSSSCP00045005430.1
  ENSSSCP00045005432.1
  ENSSSCP00050009286.1
  ENSSSCP00050009295.1
  ENSSSCP00050009311.1
  ENSSSCP00055020262.1
  ENSSSCP00055020284.1
  ENSSSCP00055020294.1
  ENSSSCP00060005698.1
  ENSSSCP00060005700.1
  ENSSSCP00060005702.1
  ENSSSCP00065015033.1
  ENSSSCP00065015035.1
  ENSSSCP00065015036.1
  ENSSSCP00070007563.1
  ENSSSCP00070007572.1
  ENSSSCP00070007590.1
  ENSSSCP00085026743
  ENSSSCP00085026749
  ENSSSCP00085026752
  ENSSSCP00085026754
  ENSSSCP00085026758
  ENSSSCP00090022760
  ENSSSCP00090022763
  ENSSSCP00090022764
  ENSSSCP00090022767
  ENSSSCP00090022768
  ENSSSCP00105041346
  ENSSSCP00105041363
  ENSSSCP00105041378
  ENSSSCP00105041390
  ENSSSCP00105041447
  ENSSSCP00110040670
  ENSSSCP00110040677
  ENSSSCP00110040682
  ENSSSCP00110040685
  ENSSSCP00110040706
  ENSSSCP00115003662
  ENSSSCP00130035117
  ENSSSCP00130035128
  ENSSSCP00130035141
  ENSSSCP00130035154
  ENSSSCP00130035192
GenBank Protein P14082 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005654741   ⟸   XM_005654684
- Peptide Label: isoform X1
- UniProtKB: A0A287AS34 (UniProtKB/TrEMBL),   A0A4X1SYM5 (UniProtKB/TrEMBL),   A0A8D1EHL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005654743   ⟸   XM_005654686
- Peptide Label: isoform X2
- UniProtKB: P14082 (UniProtKB/Swiss-Prot),   A0A8D1EHL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013842732   ⟸   XM_013987278
- Peptide Label: isoform X2
- UniProtKB: P14082 (UniProtKB/Swiss-Prot),   A0A8D1EHL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_999424   ⟸   NM_214259
- Peptide Label: precursor
- UniProtKB: P14082 (UniProtKB/Swiss-Prot),   A0A8D1EHL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005654742   ⟸   XM_005654685
- Peptide Label: isoform X2
- UniProtKB: P14082 (UniProtKB/Swiss-Prot),   A0A8D1EHL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020937070   ⟸   XM_021081411
- Peptide Label: isoform X2
- UniProtKB: P14082 (UniProtKB/Swiss-Prot),   A0A8D1EHL2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000059903   ⟸   ENSSSCT00000073803
Ensembl Acc Id: ENSSSCP00000046671   ⟸   ENSSSCT00000042207
Ensembl Acc Id: ENSSSCP00000058570   ⟸   ENSSSCT00000053649
Ensembl Acc Id: ENSSSCP00000014166   ⟸   ENSSSCT00000014561
Protein Domains
Nerve growth factor-related


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013333 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00015046833 UniProtKB/Swiss-Prot
  ENSSSCG00025067546 UniProtKB/Swiss-Prot
  ENSSSCG00030044027 UniProtKB/Swiss-Prot
  ENSSSCG00035013262 UniProtKB/Swiss-Prot
  ENSSSCG00045004861 UniProtKB/Swiss-Prot
  ENSSSCG00050016207 UniProtKB/Swiss-Prot
  ENSSSCG00055012979 UniProtKB/Swiss-Prot
  ENSSSCG00060011248 UniProtKB/Swiss-Prot
  ENSSSCG00065026682 UniProtKB/Swiss-Prot
  ENSSSCG00070004870 UniProtKB/Swiss-Prot
  ENSSSCG00085020209 UniProtKB/Swiss-Prot
  ENSSSCG00090020647 UniProtKB/Swiss-Prot
  ENSSSCG00105030968 UniProtKB/Swiss-Prot
  ENSSSCG00110030555 UniProtKB/Swiss-Prot
  ENSSSCG00115002378 UniProtKB/Swiss-Prot
  ENSSSCG00130025527 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000014561 ENTREZGENE
  ENSSSCT00000014561.5 UniProtKB/Swiss-Prot
  ENSSSCT00000042207 ENTREZGENE
  ENSSSCT00000053649 ENTREZGENE
  ENSSSCT00000053649.2 UniProtKB/Swiss-Prot
  ENSSSCT00000073803 ENTREZGENE
  ENSSSCT00000073803.2 UniProtKB/Swiss-Prot
  ENSSSCT00015062752.1 UniProtKB/Swiss-Prot
  ENSSSCT00015063053.1 UniProtKB/Swiss-Prot
  ENSSSCT00015063388.1 UniProtKB/Swiss-Prot
  ENSSSCT00025092825.1 UniProtKB/Swiss-Prot
  ENSSSCT00025092926.1 UniProtKB/Swiss-Prot
  ENSSSCT00025093020.1 UniProtKB/Swiss-Prot
  ENSSSCT00030061437.1 UniProtKB/Swiss-Prot
  ENSSSCT00030061473.1 UniProtKB/Swiss-Prot
  ENSSSCT00030061511.1 UniProtKB/Swiss-Prot
  ENSSSCT00035016735.1 UniProtKB/Swiss-Prot
  ENSSSCT00035016746.1 UniProtKB/Swiss-Prot
  ENSSSCT00035016754.1 UniProtKB/Swiss-Prot
  ENSSSCT00045008037.1 UniProtKB/Swiss-Prot
  ENSSSCT00045008039.1 UniProtKB/Swiss-Prot
  ENSSSCT00045008041.1 UniProtKB/Swiss-Prot
  ENSSSCT00050022067.1 UniProtKB/Swiss-Prot
  ENSSSCT00050022084.1 UniProtKB/Swiss-Prot
  ENSSSCT00050022110.1 UniProtKB/Swiss-Prot
  ENSSSCT00055025515.1 UniProtKB/Swiss-Prot
  ENSSSCT00055025539.1 UniProtKB/Swiss-Prot
  ENSSSCT00055025549.1 UniProtKB/Swiss-Prot
  ENSSSCT00060014675.1 UniProtKB/Swiss-Prot
  ENSSSCT00060014681.1 UniProtKB/Swiss-Prot
  ENSSSCT00060014687.1 UniProtKB/Swiss-Prot
  ENSSSCT00065035893.1 UniProtKB/Swiss-Prot
  ENSSSCT00065035896.1 UniProtKB/Swiss-Prot
  ENSSSCT00065035899.1 UniProtKB/Swiss-Prot
  ENSSSCT00070009213.1 UniProtKB/Swiss-Prot
  ENSSSCT00070009223.1 UniProtKB/Swiss-Prot
  ENSSSCT00070009245.1 UniProtKB/Swiss-Prot
  ENSSSCT00085038499 UniProtKB/Swiss-Prot
  ENSSSCT00085038508 UniProtKB/Swiss-Prot
  ENSSSCT00085038510 UniProtKB/Swiss-Prot
  ENSSSCT00085038512 UniProtKB/Swiss-Prot
  ENSSSCT00085038516 UniProtKB/Swiss-Prot
  ENSSSCT00090036581 UniProtKB/Swiss-Prot
  ENSSSCT00090036584 UniProtKB/Swiss-Prot
  ENSSSCT00090036585 UniProtKB/Swiss-Prot
  ENSSSCT00090036588 UniProtKB/Swiss-Prot
  ENSSSCT00090036590 UniProtKB/Swiss-Prot
  ENSSSCT00105058690 UniProtKB/Swiss-Prot
  ENSSSCT00105058716 UniProtKB/Swiss-Prot
  ENSSSCT00105058740 UniProtKB/Swiss-Prot
  ENSSSCT00105058754 UniProtKB/Swiss-Prot
  ENSSSCT00105058853 UniProtKB/Swiss-Prot
  ENSSSCT00110058369 UniProtKB/Swiss-Prot
  ENSSSCT00110058376 UniProtKB/Swiss-Prot
  ENSSSCT00110058381 UniProtKB/Swiss-Prot
  ENSSSCT00110058384 UniProtKB/Swiss-Prot
  ENSSSCT00110058406 UniProtKB/Swiss-Prot
  ENSSSCT00115003975 UniProtKB/Swiss-Prot
  ENSSSCT00130049559 UniProtKB/Swiss-Prot
  ENSSSCT00130049570 UniProtKB/Swiss-Prot
  ENSSSCT00130049583 UniProtKB/Swiss-Prot
  ENSSSCT00130049597 UniProtKB/Swiss-Prot
  ENSSSCT00130049635 UniProtKB/Swiss-Prot
Gene3D-CATH 2.10.90.10 UniProtKB/Swiss-Prot
InterPro Brain-der_neurotrophic_factor UniProtKB/Swiss-Prot
  Cystine-knot_cytokine UniProtKB/Swiss-Prot
  Nerve_growth_factor-like UniProtKB/Swiss-Prot
  Nerve_growth_factor-rel UniProtKB/Swiss-Prot
  Nerve_growth_factor_CS UniProtKB/Swiss-Prot
KEGG Report ssc:397495 UniProtKB/Swiss-Prot
NCBI Gene BDNF ENTREZGENE
PANTHER PTHR11589 UniProtKB/Swiss-Prot
  PTHR11589:SF3 UniProtKB/Swiss-Prot
Pfam NGF UniProtKB/Swiss-Prot
PIRSF NGF UniProtKB/Swiss-Prot
PRINTS BDNFACTOR UniProtKB/Swiss-Prot
  NGF UniProtKB/Swiss-Prot
PROSITE NGF_1 UniProtKB/Swiss-Prot
  NGF_2 UniProtKB/Swiss-Prot
SMART NGF UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57501 UniProtKB/Swiss-Prot
UniProt A0A287AS34 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SYM5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EHL2 ENTREZGENE, UniProtKB/TrEMBL
  BDNF_PIG UniProtKB/Swiss-Prot, ENTREZGENE
  Q9BFI0_PIG UniProtKB/TrEMBL
VGNC ID VGNC:85795 ENTREZGENE