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Gene: SELE (selectin E) Sus scrofa

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Symbol:

SELE

Name:

selectin E

RGD ID:

14293223

Description:

ENCODES a protein that exhibits phospholipase binding (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN actin filament-based process (ortholog); leukocyte cell-cell adhesion (ortholog); leukocyte migration (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); allergic contact dermatitis (ortholog); arthritis (ortholog); FOUND IN caveola (ortholog); clathrin-coated pit (ortholog); cortical cytoskeleton (ortholog); INTERACTS WITH 3,3',4,4'-tetrachlorobiphenyl; aluminium oxide; bis(2-chloroethyl) sulfide

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CD62 antigen-like family member E; E-selectin; ELAM-1; endothelial leukocyte adhesion molecule 1; LECAM2; leukocyte-endothelial cell adhesion molecule 2; selectin E (endothelial adhesion molecule 1)

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SELE (selectin E)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Sele (selectin, endothelial cell)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Sele (selectin E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sele (selectin E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SELE (selectin E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SELE (selectin E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sele (selectin E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SELE (selectin E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sele (selectin E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	4	81,289,061 - 81,299,657 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	88,914,255 - 88,924,371 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

1q24 Deletion Syndrome (ISO)

allergic contact dermatitis (ISO)

arthritis (ISO)

atopic dermatitis (ISO)

atrial fibrillation (ISO)

Brain Injuries (ISO)

brain ischemia (ISO)

cardiovascular system disease (ISO)

cerebrovascular disease (ISO)

coronary artery disease (ISO)

COVID-19 (ISO)

gastrointestinal stromal tumor (ISO)

Hypercholesterolemia (ISO)

IgA glomerulonephritis (ISO)

multiple sclerosis (ISO)

Myocardial Ischemia (ISO)

myocarditis (ISO)

parathyroid carcinoma (ISO)

Reperfusion Injury (ISO)

rheumatic myocarditis (ISO)

type 1 diabetes mellitus (ISO)

urticaria (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

3,3',4,4'-tetrachlorobiphenyl (EXP)

aluminium oxide (EXP)

bis(2-chloroethyl) sulfide (EXP)

dichlorine (EXP)

lipopolysaccharide (EXP)

mastoparan (EXP)

melittin (EXP)

N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (EXP)

phorbol 13-acetate 12-myristate (EXP)

quercetin (EXP)

zinc acetate (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament-based process (ISO)

cell adhesion (IEA)

heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (IBA)

leukocyte cell-cell adhesion (ISO)

leukocyte migration (ISO)

leukocyte tethering or rolling (IBA)

phospholipase C-activating G protein-coupled receptor signaling pathway (ISO)

positive regulation of leukocyte migration (ISO)

positive regulation of leukocyte tethering or rolling (ISS)

positive regulation of receptor internalization (ISO)

response to cytokine (IBA,ISO)

response to interleukin-1 (ISO)

Cellular Component

caveola (ISO)

clathrin-coated pit (ISO)

cortical cytoskeleton (ISO)

external side of plasma membrane (IBA)

extracellular space (IBA,ISO)

membrane (IEA)

membrane raft (ISO)

perinuclear region of cytoplasm (ISO)

plasma membrane (IEA)

Molecular Function

carbohydrate binding (IEA)

metal ion binding (IEA)

oligosaccharide binding (IBA)

phospholipase binding (ISO)

protein binding (ISO)

sialic acid binding (IBA)

transmembrane signaling receptor activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

eicosanoid signaling pathway (ISO)

References

Additional References at PubMed

PMID:7516159	PMID:7526854	PMID:8918234	PMID:15050129	PMID:22301074	PMID:24336934	PMID:30032202

Genomics

Comparative Map Data

SELE
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	4	81,289,061 - 81,299,657 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	88,914,255 - 88,924,371 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SELE
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	169,722,640 - 169,734,079 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	169,722,640 - 169,764,705 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	169,691,781 - 169,703,220 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	167,958,406 - 167,969,803 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	166,423,439 - 166,434,837	NCBI
Celera	1	142,801,587 - 142,813,012 (-)	NCBI		Celera
Cytogenetic Map	1	q24.2	NCBI
HuRef	1	140,914,126 - 140,925,551 (-)	NCBI		HuRef
CHM1_1	1	171,113,936 - 171,125,374 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	169,078,428 - 169,089,853 (-)	NCBI		T2T-CHM13v2.0

Sele
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	163,867,200 - 163,886,056 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	163,875,773 - 163,885,246 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	164,039,614 - 164,058,487 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	164,048,234 - 164,057,677 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	165,978,365 - 165,987,808 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	165,884,909 - 165,894,352 (+)	NCBI		MGSCv36	mm8
Celera	1	166,489,844 - 166,499,312 (+)	NCBI		Celera
Cytogenetic Map	1	H2.2	NCBI
cM Map	1	71.35	NCBI

Sele
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	78,935,997 - 78,945,905 (+)	NCBI		GRCr8
mRatBN7.2	13	76,402,841 - 76,412,741 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	76,403,304 - 76,412,741 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	79,021,472 - 79,031,290 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	80,325,949 - 80,335,341 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	77,580,536 - 77,589,930 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	82,355,234 - 82,365,323 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	82,355,471 - 82,365,341 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	87,234,842 - 87,244,746 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	79,813,455 - 79,822,845 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	79,827,642 - 79,837,033 (+)	NCBI
Celera	13	76,136,932 - 76,146,318 (+)	NCBI		Celera
Cytogenetic Map	13	q23	NCBI

Sele
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955462	7,564,437 - 7,575,297 (+)	NCBI	ChiLan1.0	ChiLan1.0

SELE
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	80,034,813 - 80,046,272 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	79,703,217 - 79,714,676 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	145,205,684 - 145,217,143 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	148,927,333 - 148,938,781 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	148,930,437 - 148,938,313 (-)	Ensembl	panpan1.1		panPan2

SELE
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	28,888,503 - 28,898,787 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	28,888,197 - 28,898,786 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	28,420,727 - 28,430,555 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	28,690,348 - 28,700,684 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	28,690,094 - 28,700,681 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	28,538,997 - 28,548,824 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	28,574,705 - 28,584,533 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	28,811,713 - 28,821,538 (+)	NCBI		UU_Cfam_GSD_1.0

Sele
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	99,067,998 - 99,077,891 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	16,915,182 - 16,921,840 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	16,915,203 - 16,921,840 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SELE
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	59,305,610 - 59,333,789 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	59,322,913 - 59,330,668 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	60,978,152 - 60,989,645 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sele
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624826	7,626,380 - 7,635,309 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624826	7,624,852 - 7,635,330 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SELE
282 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	2	7	2	5	11	8	7	3	5	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_214268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013996784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU407291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01020020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L39076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U08350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U37521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

NM_214268 ⟹ NP_999433

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	81,289,173 - 81,298,969 (+)	NCBI

Sequence:

show sequence

GCAAGCCAGAGCAACACAGGAGGAATTTGACACCAAGATAAACACTTCACAAAACCAAAAGCAT
TTCAAGTCTCATCTTAGGATCAAAAGAACTCTTGAAGTCATGATTGCTTCACAGTTTCTCTCTG
CTCTCCCTTTGGTGCTTCTCCTGCTTAGAGAAAGTGGAGCCTGGTCTTACAGCGCCTCTACAGA
AACCATGACTTTTGATGATGCCAGTGCTTATTGCCAGCAGAGGTACACACATCTGGTCGCAATT
CAAAACCATGCAGAGATTGAATACCTGAACTCCACGTTCAACTATTCAGCAAGTTACTACTGGA
TTGGAATCAGGAAGATCAATGGTACATGGACATGGATAGGGACCAAGAAGGCCTTGACCCCAGA
GGCCACCAACTGGGCTCCAGGTGAACCAAATAATAAGCAAAGCAACGAGGACTGTGTAGAGATC
TACATCAAGAGAGACAAGGACTCGGGCAAGTGGAATGATGAGAGATGCAGCAAAAAGAAGCTCG
CCTTGTGCTACACAGCTGCCTGTACCCCTACATCCTGCAGCGGCCATGGTGAATGCATAGAGAC
CATCAATAGCTCTACTTGCCAGTGCTACCCTGGCTTCCGAGGCCTCCAGTGTGAGCAAGTGGTT
GAGTGTGATGCTTTGGAAAATCCTGTCAACGGAGTCGTGACATGTCCCCAAAGCCTCCCATGGA
ACACAACCTGTGCATTTGAGTGTAAGGAAGGATTTGAACTCATCGGACCTGAGCACCTGCAATG
TACCTCATCTGGGAGCTGGGACGGCAAGAAGCCAACGTGTAAAGCTGTGACATGTGACACCGTC
GGCCATCCTCAGAATGGTGATGTGAGTTATAACCACTCCTCTATTGGAGAGTTTGCCTACAAGT
CAACCTGCCACTTCACCTGTGCAGAAGGCTTCGGGCTGCAGGGGCCAGCCCAGATTGAATGCAC
TGCCCAGGGGCAATGGACCCAGCAAGCCCCAGTTTGTAAAGCTGTGAAATGTCCTGCTGTCTCC
CAGCCCAAGAATGGCTTCGTGAAGTTTACCCATTCCCCCAATGGAGAGTTTACCTACAATTCCT
CCTGTGCCTTCAGCTGTGAGGAAGGCTTTGAATTACGTGGATCAGCTCAACTTGCATGCACGTC
TCAAGGACAATGGACACAGGAGGTTCCCTCCTGCCAAGCGGTACAGTGTTCAAGTTTGGAGGTT
CCCAGAGAGATCAACATGAGCTGCAGTGGGGAGCCCATGTTTGGTGCTGTGTGTACATTTGCCT
GTCCTGAAGGATGGATGCTCAATGGCTCTGTAGCTCTGACGTGTGGTGCCACAGGACACTGGTC
TGGGATGCTGCCTACTTGTGAAGCTCCTGCTGAGTCCAAAATTCCCTTGGCAATGGGACTTGCT
GCTGGTGGAGTCTCCTTCATGACATCAGCATCATTTCTCCTCTGGCTCCTGAAACGCCTTCGGA
AGAGAGCAAAAAAATTTGTTCCTTCCAGCAGCTCCGAATGCCTTCAACCCAATGGATCCTACCA
AATGCCTTCTGACTTAATTTAAGTCCAAAGGAATCAGGAGCACAGTTAAATTTGGGAATTACCA
TGATACCCTGAAGACGGTAGAGAAGAGACCTCTGCTAAGGTCTCTGGCTCTTCTCAGCTACTGC
ACCTGCCGGCTGCATATTCAGCTGGGACCCTGGCACCTGTGAAGACCAGGACATCAAGGGACCA
AAATCCAGTGGACAAGGCCAGTCTACCACCAAAAAGACTCAGTTTTCTCTTTTCCAGTGCTGGA
TACTGGAAGGAAGGAATATTCTCTTCTATTTGAAAGTGAAGAGACTGGGGTTTCAGAGTTCATT
TTCTAACTCTCCCTTTGCTCACTGTGAAATCTCGGTGTGAAACACAGTATTTTATGACACCATT
TCTTTCTTTTGTCCCTTACAGTGTTTCAATCACTGATTACGTGGTTGCTGTATGGGGATGAATA
ATAATTGTCAAAAGTTTAGGGGAAAAAAATTGGCCAAAGACCTTCTATTAACTGACTTGGGGGG
AAAAATGACATTTTTTAATGGCATAGGGTGACTATGTGGGAAATGTTGATAGTGGGGAAATTCT
ATTTAGCAGTCTGTGCAAGGATCAGCAAGCACAGTCTCAATCACTTTTATCCCTGTGGGATACA
TTGGTTTTTAAAGTGTTTGTAGAGGTTGTGTTCTTTTTACTTGTATCGAGTGTAGTATAAATCC
CATAAGTCTTAATTCAGTACAAGTGTTGTAGGGACCTTAAAATATGTAAATAGTAGGACTATGA
TAGAGTAAAATCTTTGTTTATTAACCAAATCTTTGTTTATTAAATTCCAAAGTTACATCTGTGG
TAAATTTATTTCAGGAAGGGAAAAATACTATCCCCTAGCAGGGTATAAATCAGTATAAAATTCC
AAATGTTTTACTATGGTTTCTTTAAAAGATCATAAATAGTAGCAGGAGAGCAAAATCTGAGTGG
CATACACTTGTACACTGTCAGGTATTTTTTCAGAGCTATGCGGTTTCCATGACAAAATACTTCC
ATGGAGCCAAACATTCTGATTTGATAAAAGCATAAATGAAAACAAATGAAGGTACAGTTTTATG
GGGTTTTTTTTTGGGAAAAAAACATAGATGTATAAATGTGCTTTGCATTCCTGCAAAGATATTT
GTCAGATGTGATGTGTCTACATATAATTTGTATATAGTAATAAGATTTTAAATCCATGATAGAA
ACTCACCATATAAAGGATCTGTCAGTGGATCTTTTTAAAGTGAAGATTTCTAATGATTATTCCC
TAAGTTTCCTATTCAGCTGTTAGGGTGTTCCTAAAGAGAGGAAAGCCTGTTTGAGAAAGTATTG
ATGCTTATTTATAAGGGAGTTTAAAATTCCTAAGGAATCTCTAGCTTTTGGTTGATCACTGGCC
ATGAGAAATACTGGGCCAGTAATTGTCAAAGCTGCTCCAACCTTGCAGGATGATGTGCAAATCA
AAACTCTCCCACTTTTTCATTTTTGATTTCATTGAAATGGATGTGTTGAAAAAGCAAAGTTTCA
GAGAAGGGCTGAATGCGTATTGGCAAATGTGAAACCAAAAGTAACAGGAAGATATGATGAAGAT
CAGAATAGCAGAGGTTTTCAAGGTACAAAAGAACTCTG

hide sequence

RefSeq Acc Id:

XM_013996784 ⟹ XP_013852238

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	81,289,061 - 81,299,657 (+)	NCBI

Sequence:

show sequence

ACATATCCTCCTATTATTCACAGGAAGCGAGCTGGCCTATAAAGGAGCTCCAGCAGGAGCAGTG
CTCCACTGTTCTTGGCTGACTTCTCATCAGAACTGCAAGAGGTACGAAGCAAGCCAGAGCAACA
CAGGAGGAATTTGACACCAAGATAAACACTTCACAAAACCAAAAGCATTTCAAGTCTCATCTTA
GGATCAAAAGAACTCTTGAAGTCATGATTGCTTCACAGTTTCTCTCTGCTCTCCCTTTGGTGCT
TCTCCTGCTTAGAGAAAGTGGAGCCTGGTCTTACAGCGCCTCTACAGAAACCATGACTTTTGAT
GATGCCAGTGCTTATTGCCAGCAGAGGTACACACATCTGGTCGCAATTCAAAACCATGCAGAGA
TTGAATACCTGAACTCCACGTTCAACTATTCAGCAAGTTACTACTGGATTGGAATCAGGAAGAT
CAATGGTACATGGACATGGATAGGGACCAAGAAGGCCTTGACCCCAGAGGCCACCAACTGGGCT
CCAGGTGAACCAAATAATAAGCAAAGCAACGAGGACTGTGTAGAGATCTACATCAAGAGAGACA
AGGACTCGGGCAAGTGGAATGATGAGAGATGCAGCAAAAAGAAGCTCGCCTTGTGCTACACAGC
TGCCTGTACCCCTACATCCTGCAGCGGCCATGGTGAATGCATAGAGACCATCAATAGCTCTACT
TGCCAGTGCTACCCTGGCTTCCGAGGCCTCCAGTGTGAGCAAGTGGTTGAGTGTGATGCTTTGG
AAAATCCTGTCAACGGAGTCGTGACATGTCCCCAAAGCCTCCCATGGAACACAACCTGTGCATT
TGAGTGTAAGGAAGGATTTGAACTCATCGGACCTGAGCACCTGCAATGTACCTCATCTGGGAGC
TGGGACGGCAAGAAGCCAACGTGTAAAGCTGTGACATGTGACACCGTCGGCCATCCTCAGAATG
GTGATGTGAGTTATAACCACTCCTCTATTGGAGAGTTTGCCTACAAGTCAACCTGCCACTTCAC
CTGTGCAGAAGGCTTCGGGCTGCAGGGGCCAGCCCAGATTGAATGCACTGCCCAGGGGCAATGG
ACCCAGCAAGCCCCAGTTTGTAAAGCTGTGAAATGTCCTGCTGTCTCCCAGCCCAAGAATGGCT
TCGTGAAGTTTACCCATTCCCCCAATGGAGAGTTTACCTACAATTCCTCCTGTGCCTTCAGCTG
TGAGGAAGGCTTTGAATTACGTGGATCAGCTCAACTTGCATGCACGTCTCAAGGACAATGGACA
CAGGAGGTTCCCTCCTGCCAAGCGGTACAGTGTTCAAGTTTGGAGGTTCCCAGAGAGATCAACA
TGAGCTGCAGTGGGGAGCCCATGTTTGGTGCTGTGTGTACATTTGCCTGTCCTGAAGGATGGAT
GCTCAATGGCTCTGTAGCTCTGACGTGTGGTGCCACAGGACACTGGTCTGGGATGCTGCCTACT
TGTGAAGCTCCTGCTGAGTCCAAAATTCCCTTGGCAATGGGACTTGCTGCTGGTGGAGTCTCCT
TCATGACATCAGCATCATTTCTCCTCTGGCTCCTGAAACGCCTTCGGAAGAGAGCAAAAAAATT
TGTTCCTTCCAGCTCCGAATGCCTTCAACCCAATGGATCCTACCAAATGCCTTCTGACTTAATT
TAAGTCCAAAGGAATCAGGAGCACAGTTAAATTTGGGAATTACCATGATACCCTGAAGACGGTA
GAGAAGAGACCTCTGCTAAGGTCTCTGGCTCTTCTCAGCTACTGCACCTGCCGGCTGCATATTC
AGCTGGGACCCTGGCACCTGTGAAGACCAGGACATCAAGGGACCAAAATCCAGTGGACAAGGCC
AGTCTACCACCAAAAAGACTCAGTTTTCTCTTTTCCAGTGCTGGATACTGGAAGGAAGGAATAT
TCTCTTCTATTTGAAAGTGAAGAGACTGGGGTTTCAGAGTTCATTTTCTAACTCTCCCTTTGCT
CACTGTGAAATCTCGGTGTGAAACACAGTATTTTATGACACCATTTCTTTCTTTTGTCCCTTAC
AGTGTTTCAATCACTGATTACGTGGTTGCTGTATGGGGATGAATAATAATTGTCAAAAGTTTAG
GGGAAAAAAATTGGCCAAAGACCTTCTATTAACTGACTTGGGGGGAAAAATGACATTTTTTAAT
GGCATAGGGTGACTATGTGGGAAATGTTGATAGTGGGGAAATTCTATTTAGCAGTCTGTGCAAG
GATCAGCAAGCACAGTCTCAATCACTTTTATCCCTGTGGGATACATTGGTTTTTAAAGTGTTTG
TAGAGGTTGTGTTCTTTTTACTTGTATCGAGTGTAGTATAAATCCCATAAGTCTTAATTCAGTA
CAAGTGTTGTAGGGACCTTAAAATATGTAAATAGTAGGACTATGATAGAGTAAAATCTTTGTTT
ATTAACCAAATCTTTGTTTATTAAATTCCAAAGTTACATCTGTGGTAAATTTATTTCAGGAAGG
GAAAAATACTATCCCCTAGCAGGGTATAAATCAGTATAAAATTCCAAATGTTTTACTATGGTTT
CTTTAAAAGATCATAAATAGTAGCAGGAGAGCAAAATCTGAGTGGCATACACTTGTACACTGTC
AGGTATTTTTTCAGAGCTATGCGGTTTCCATGACAAAATACTTCCATGGAGCCAAACATTCTGA
TTTGATAAAAGCATAAATGAAAACAAATGAAGGTACAGTTTTATGGGGTTTTTTTTTGGGAAAA
AAACATAGATGTATAAATGTGCTTTGCATTCCTGCAAAGATATTTGTCAGATGTGATGTGTCTA
CATATAATTTGTATATAGTAATAAGATTTTAAATCCATGATAGAAACTCACCATATAAAGGATC
TGTCAGTGGATCTTTTTAAAGTGAAGATTTCTAATGATTATTCCCTAAGTTTCCTATTCAGCTG
TTAGGGTGTTCCTAAAGAGAGGAAAGCCTGTTTGAGAAAGTATTGATGCTTATTTATAAGGGAG
TTTAAAATTCCTAAGGAATCTCTAGCTTTTGGTTGATCACTGGCCATGAGAAATACTGGGCCAG
TAATTGTCAAAGCTGCTCCAACCTTGCAGGATGATGTGCAAATCAAAACTCTCCCACTTTTTCA
TTTTTGATTTCATTGAAATGGATGTGTTGAAAAAGCAAAGTTTCAGAGAAGGGCTGAATGCGTA
TTGGCAAATGTGAAACCAAAAGTAACAGGAAGATATGATGAAGATCAGAATAGCAGAGGTTTTC
AAGGTACAAAAGAACTCTGGGAAATAAGGGAGAGAGAGAGAAAAAAACAAGTATTATGAGCAGG
CTACATATGGAATGAATTACTATTTTCTCTGCAATTGTTCTACTGTTGTAAATATTGTTCAAGT
GCTGTATATACTGCATTGGAAATAGCTGTGTGAAATATATATGTGGTCTTTGTTTCGGTTTTAT
AAAGTATTTTAAATTATGATTTAAAATATTTTACATTTAAGTGTGTATTTATTTAAGCTTATGT
CATACCTATTATATTTGACATGGCACTGTAAAGTTTGATAATAAACATGTTTATATTTAGCTCT
GTGTATAGGCTCTTTCTAAAAAATTCTATTTTACTTGGATAAAACTCACATACCATAAAATTCA
CCCTTTTAAAATGCGTAATCTAATAGTTATGGGGATATTCACAAGGTCATGTGACCATCATCAC
TATCTCTAACTCTAGAACATTTCTATTATCTCCCAAAGAAACTCATGACCCATTAGTAGTCACT
CCCCATCTTTCCCAAGCTCTGGTAACTACAAATCTACTTTTTACCTCTATAAATTCACCAATTC
TGGACATTTAATATACATAGAATGTGTTGAGCGCCTTTCACTTAGCGTGTTTTCAAGGTTCACC
CATTTGTACTACATATTAGCACTTCATTCCTTTTTATGGTGGAATAATACTCTACTGCATGAAT
ACA

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Protein Sequences


Protein RefSeqs	NP_999433	(Get FASTA)	NCBI Sequence Viewer
	XP_013852238	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA21541	(Get FASTA)	NCBI Sequence Viewer
	AAA61545	(Get FASTA)	NCBI Sequence Viewer
	AAC48680	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000006699
	ENSSSCP00000006699.1
	ENSSSCP00015007307.1
	ENSSSCP00030032085.1
	ENSSSCP00040037702.1
	ENSSSCP00040037859.1
	ENSSSCP00045008841.1
	ENSSSCP00050040160.1
	ENSSSCP00060040635.1
	ENSSSCP00065002143.1
	ENSSSCP00070033432.1
	ENSSSCP00070033521.1
	ENSSSCP00070033571.1
	ENSSSCP00070033588.1
GenBank Protein	P98110	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013852238 ⟸ XM_013996784
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D1GWP9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIASQFLSALPLVLLLLRESGAWSYSASTETMTFDDASAYCQQRYTHLVAIQNHAEIEYLNSTF NYSASYYWIGIRKINGTWTWIGTKKALTPEATNWAPGEPNNKQSNEDCVEIYIKRDKDSGKWND ERCSKKKLALCYTAACTPTSCSGHGECIETINSSTCQCYPGFRGLQCEQVVECDALENPVNGVV TCPQSLPWNTTCAFECKEGFELIGPEHLQCTSSGSWDGKKPTCKAVTCDTVGHPQNGDVSYNHS SIGEFAYKSTCHFTCAEGFGLQGPAQIECTAQGQWTQQAPVCKAVKCPAVSQPKNGFVKFTHSP NGEFTYNSSCAFSCEEGFELRGSAQLACTSQGQWTQEVPSCQAVQCSSLEVPREINMSCSGEPM FGAVCTFACPEGWMLNGSVALTCGATGHWSGMLPTCEAPAESKIPLAMGLAAGGVSFMTSASFL LWLLKRLRKRAKKFVPSSSECLQPNGSYQMPSDLI hide sequence

RefSeq Acc Id:	NP_999433 ⟸ NM_214268
- Peptide Label:	precursor
- UniProtKB:	F1RSC6 (UniProtKB/TrEMBL), A0A4X1UX95 (UniProtKB/TrEMBL), A0A8D1GWP9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIASQFLSALPLVLLLLRESGAWSYSASTETMTFDDASAYCQQRYTHLVAIQNHAEIEYLNSTF NYSASYYWIGIRKINGTWTWIGTKKALTPEATNWAPGEPNNKQSNEDCVEIYIKRDKDSGKWND ERCSKKKLALCYTAACTPTSCSGHGECIETINSSTCQCYPGFRGLQCEQVVECDALENPVNGVV TCPQSLPWNTTCAFECKEGFELIGPEHLQCTSSGSWDGKKPTCKAVTCDTVGHPQNGDVSYNHS SIGEFAYKSTCHFTCAEGFGLQGPAQIECTAQGQWTQQAPVCKAVKCPAVSQPKNGFVKFTHSP NGEFTYNSSCAFSCEEGFELRGSAQLACTSQGQWTQEVPSCQAVQCSSLEVPREINMSCSGEPM FGAVCTFACPEGWMLNGSVALTCGATGHWSGMLPTCEAPAESKIPLAMGLAAGGVSFMTSASFL LWLLKRLRKRAKKFVPSSSSECLQPNGSYQMPSDLI hide sequence

Protein Domains

C-type lectin EGF-like Sushi

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000006286	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015013883	UniProtKB/Swiss-Prot
	ENSSSCG00030050466	UniProtKB/Swiss-Prot
	ENSSSCG00040063100	UniProtKB/TrEMBL
	ENSSSCG00045007681	UniProtKB/TrEMBL
	ENSSSCG00050068229	UniProtKB/Swiss-Prot
	ENSSSCG00060068755	UniProtKB/Swiss-Prot
	ENSSSCG00065003630	UniProtKB/Swiss-Prot
	ENSSSCG00070020072	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000006887	ENTREZGENE
	ENSSSCT00000006887.4	UniProtKB/TrEMBL
	ENSSSCT00015018437.1	UniProtKB/Swiss-Prot
	ENSSSCT00030070356.1	UniProtKB/Swiss-Prot
	ENSSSCT00040086052.1	UniProtKB/TrEMBL
	ENSSSCT00040086353.1	UniProtKB/TrEMBL
	ENSSSCT00045012857.1	UniProtKB/TrEMBL
	ENSSSCT00050093099.1	UniProtKB/Swiss-Prot
	ENSSSCT00060093921.1	UniProtKB/Swiss-Prot
	ENSSSCT00065004958.1	UniProtKB/Swiss-Prot
	ENSSSCT00070039911.1	UniProtKB/TrEMBL
	ENSSSCT00070040014.1	UniProtKB/TrEMBL
	ENSSSCT00070040066.1	UniProtKB/TrEMBL
	ENSSSCT00070040087.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.100.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Complement Module, domain 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	C-type_lectin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	C-type_lectin-like/link_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	C-type_lectin_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Compl-Cell_Adhes-Reg	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CTDL_fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF-like_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Selectin_CTLD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Selectin_superfamily	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Sushi/SCR/CCP_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Sushi_SCR_CCP_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	ssc:397508	UniProtKB/Swiss-Prot
NCBI Gene	SELE	ENTREZGENE
PANTHER	COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	E-SELECTIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Lectin_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Sushi	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS	SELECTIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	C_TYPE_LECTIN_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	C_TYPE_LECTIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SUSHI	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	CCP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CLECT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	EGF/Laminin	UniProtKB/TrEMBL
	SSF56436	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF57535	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A4X1UVY9_PIG	UniProtKB/TrEMBL
	A0A4X1UX95	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1UXM9_PIG	UniProtKB/TrEMBL
	A0A4X1UXS5_PIG	UniProtKB/TrEMBL
	A0A8D1FHY0_PIG	UniProtKB/TrEMBL
	A0A8D1FKV0_PIG	UniProtKB/TrEMBL
	A0A8D1GWP9	ENTREZGENE, UniProtKB/TrEMBL
	F1RSC6	ENTREZGENE, UniProtKB/TrEMBL
	LYAM2_PIG	UniProtKB/Swiss-Prot, ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)