SMARCA1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1) - Rat Genome Database

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Gene: SMARCA1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1) Sus scrofa
Analyze
Symbol: SMARCA1
Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
RGD ID: 14288925
Description: ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); ATP-dependent chromatin remodeler activity (ortholog); ATP-dependent DNA/DNA annealing activity (ortholog); INVOLVED IN brain development (ortholog); positive regulation of DNA-templated transcription (ortholog); regulation of DNA-templated transcription (ortholog); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN ATPase complex (ortholog); NURF complex (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable global transcription activator SNF2L1; SNF2L-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX106,039,969 - 106,116,139 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X106,039,961 - 106,116,156 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X121,756,253 - 121,832,168 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:18845624   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SMARCA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX106,039,969 - 106,116,139 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X106,039,961 - 106,116,156 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X121,756,253 - 121,832,168 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X129,446,506 - 129,523,490 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX129,446,501 - 129,523,500 (-)EnsemblGRCh38hg38GRCh38
GRCh37X128,580,483 - 128,657,467 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X128,408,159 - 128,485,122 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X128,306,012 - 128,382,976NCBI
CeleraX128,969,174 - 129,046,159 (-)NCBICelera
Cytogenetic MapXq25-q26.1NCBI
HuRefX117,987,239 - 118,059,634 (-)NCBIHuRef
CHM1_1X128,491,871 - 128,568,824 (-)NCBICHM1_1
T2T-CHM13v2.0X127,765,288 - 127,842,272 (-)NCBIT2T-CHM13v2.0
Smarca1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X46,898,247 - 46,981,490 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX46,898,245 - 46,981,851 (-)EnsemblGRCm39 Ensembl
GRCm38X47,809,370 - 47,892,613 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX47,809,368 - 47,892,974 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X45,162,547 - 45,245,729 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X44,053,997 - 44,137,146 (-)NCBIMGSCv36mm8
CeleraX35,318,277 - 35,394,449 (-)NCBICelera
Cytogenetic MapXA4NCBI
cM MapX25.41NCBI
Smarca1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X131,858,148 - 131,944,639 (-)NCBIGRCr8
mRatBN7.2X126,980,201 - 127,066,385 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX126,994,947 - 127,066,347 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX129,115,075 - 129,192,859 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X132,685,491 - 132,763,196 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X130,212,211 - 130,289,995 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X134,634,651 - 134,719,503 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX134,647,703 - 134,719,097 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X134,707,434 - 134,791,566 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X134,177,345 - 134,249,029 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX125,946,308 - 126,012,001 (-)NCBICelera
Cytogenetic MapXq35NCBI
Smarca1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554735,498,674 - 5,573,169 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554735,498,738 - 5,572,863 (+)NCBIChiLan1.0ChiLan1.0
SMARCA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X128,870,571 - 128,949,739 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X128,874,185 - 128,951,225 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X118,577,295 - 118,654,326 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X128,875,334 - 128,952,204 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX128,875,334 - 128,952,900 (-)Ensemblpanpan1.1panPan2
SMARCA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X100,678,457 - 100,749,216 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX100,679,942 - 100,749,651 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX86,845,498 - 86,918,086 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X102,524,025 - 102,596,588 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX102,524,025 - 102,596,704 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X99,941,623 - 100,014,434 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X101,786,630 - 101,859,641 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X101,565,278 - 101,638,177 (-)NCBIUU_Cfam_GSD_1.0
Smarca1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X98,876,999 - 98,956,698 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364792,030,716 - 2,110,661 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364792,030,788 - 2,110,501 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X104,690,937 - 104,768,326 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX104,690,689 - 104,768,298 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606542,175,535 - 42,253,073 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarca1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247978,626,742 - 8,710,845 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247978,627,048 - 8,710,540 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SMARCA1
576 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 5 14 12 23 3 6 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003135362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003360443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003360444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005673891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005673893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005673895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005673896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013986407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU695129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU780791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01056315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000013830   ⟹   ENSSSCP00000013448
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX106,039,987 - 106,115,868 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000032734   ⟹   ENSSSCP00000029556
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX106,039,974 - 106,115,881 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000033549   ⟹   ENSSSCP00000028784
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX106,039,969 - 106,116,139 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000071106   ⟹   ENSSSCP00000071905
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX106,053,635 - 106,108,447 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000086067   ⟹   ENSSSCP00000065035
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX106,040,234 - 106,115,842 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000088402   ⟹   ENSSSCP00000071156
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX106,039,977 - 106,115,857 (-)Ensembl
RefSeq Acc Id: XM_003135362   ⟹   XP_003135410
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,039,961 - 106,115,926 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003360443   ⟹   XP_003360491
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,039,961 - 106,115,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003360444   ⟹   XP_003360492
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,039,966 - 106,116,156 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005673891   ⟹   XP_005673948
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,039,961 - 106,115,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005673893   ⟹   XP_005673950
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,039,961 - 106,115,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005673895   ⟹   XP_005673952
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,039,966 - 106,115,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005673896   ⟹   XP_005673953
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,040,214 - 106,115,871 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013986407   ⟹   XP_013841861
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,039,961 - 106,115,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021080846   ⟹   XP_020936505
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,039,961 - 106,115,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021080847   ⟹   XP_020936506
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,039,961 - 106,115,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021080848   ⟹   XP_020936507
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,039,966 - 106,115,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021080850   ⟹   XP_020936509
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,039,961 - 106,115,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021080851   ⟹   XP_020936510
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,039,961 - 106,115,897 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021080852   ⟹   XP_020936511
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,040,214 - 106,115,882 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021080853   ⟹   XP_020936512
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,039,961 - 106,115,882 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021080854   ⟹   XP_020936513
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,039,961 - 106,115,882 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021080855   ⟹   XP_020936514
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X106,040,214 - 106,115,882 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003135410 (Get FASTA)   NCBI Sequence Viewer  
  XP_003360491 (Get FASTA)   NCBI Sequence Viewer  
  XP_003360492 (Get FASTA)   NCBI Sequence Viewer  
  XP_005673948 (Get FASTA)   NCBI Sequence Viewer  
  XP_005673950 (Get FASTA)   NCBI Sequence Viewer  
  XP_005673952 (Get FASTA)   NCBI Sequence Viewer  
  XP_005673953 (Get FASTA)   NCBI Sequence Viewer  
  XP_013841861 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936505 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936506 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936507 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936509 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936510 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936511 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936512 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936513 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936514 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ACE76521 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000013448
  ENSSSCP00000013448.5
  ENSSSCP00000028784
  ENSSSCP00000028784.3
  ENSSSCP00000029556
  ENSSSCP00000029556.4
  ENSSSCP00000071156
  ENSSSCP00000071156.2
  ENSSSCP00000071905
  ENSSSCP00000071905.1
  ENSSSCP00025038401.1
  ENSSSCP00025038571.1
  ENSSSCP00025038714.1
  ENSSSCP00025038888.1
  ENSSSCP00025039048.1
  ENSSSCP00025039259.1
  ENSSSCP00030012037.1
  ENSSSCP00030012061.1
  ENSSSCP00030012067.1
  ENSSSCP00030012077.1
  ENSSSCP00030012086.1
  ENSSSCP00030012099.1
  ENSSSCP00030012111.1
  ENSSSCP00035017262.1
  ENSSSCP00035017265.1
  ENSSSCP00035017271.1
  ENSSSCP00035017275.1
  ENSSSCP00035017280.1
  ENSSSCP00035017288.1
  ENSSSCP00040010190.1
  ENSSSCP00040010205.1
  ENSSSCP00040010216.1
  ENSSSCP00050007026.1
  ENSSSCP00050007030.1
  ENSSSCP00050007040.1
  ENSSSCP00050007043.1
  ENSSSCP00050007045.1
  ENSSSCP00055006616.1
  ENSSSCP00055006623.1
  ENSSSCP00055006634.1
  ENSSSCP00055006639.1
  ENSSSCP00055006647.1
  ENSSSCP00055006658.1
  ENSSSCP00055006663.1
  ENSSSCP00060026407.1
  ENSSSCP00060026409.1
  ENSSSCP00060026415.1
  ENSSSCP00060026417.1
  ENSSSCP00060026427.1
  ENSSSCP00065035629.1
  ENSSSCP00065035634.1
  ENSSSCP00065035637.1
  ENSSSCP00070050427.1
  ENSSSCP00070050443.1
  ENSSSCP00070050455.1
  ENSSSCP00070050469.1
  ENSSSCP00070050483.1
  ENSSSCP00070050489.1
  ENSSSCP00070050517.1
RefSeq Acc Id: XP_003135410   ⟸   XM_003135362
- Peptide Label: isoform X1
- UniProtKB: A0A480JFY5 (UniProtKB/TrEMBL),   A0A4X1W9M8 (UniProtKB/TrEMBL),   A0A8D0VVK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936510   ⟸   XM_021080851
- Peptide Label: isoform X11
- UniProtKB: A0A8D0VYB1 (UniProtKB/TrEMBL),   F1RTI9 (UniProtKB/TrEMBL),   A0A8D0T5P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005673950   ⟸   XM_005673893
- Peptide Label: isoform X4
- UniProtKB: A0A8D1TVE6 (UniProtKB/TrEMBL),   K7GNV1 (UniProtKB/TrEMBL),   A0A8D0VVK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005673948   ⟸   XM_005673891
- Peptide Label: isoform X3
- UniProtKB: A0A8D0VVK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003360491   ⟸   XM_003360443
- Peptide Label: isoform X3
- UniProtKB: A0A8D0VVK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936513   ⟸   XM_021080854
- Peptide Label: isoform X14
- UniProtKB: A0A4X1W7H3 (UniProtKB/TrEMBL),   A0A5G2R1U6 (UniProtKB/TrEMBL),   A0A8D0VVK2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936512   ⟸   XM_021080853
- Peptide Label: isoform X13
- UniProtKB: A0A4X1W7H3 (UniProtKB/TrEMBL),   A0A5G2R1U6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936509   ⟸   XM_021080850
- Peptide Label: isoform X10
- UniProtKB: A0A8D0T5P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936506   ⟸   XM_021080847
- Peptide Label: isoform X7
- UniProtKB: A0A4X1W7N5 (UniProtKB/TrEMBL),   A0A8D0VWJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936505   ⟸   XM_021080846
- Peptide Label: isoform X5
- UniProtKB: A0A8D0VWJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013841861   ⟸   XM_013986407
- Peptide Label: isoform X5
- UniProtKB: A0A8D0VWJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003360492   ⟸   XM_003360444
- Peptide Label: isoform X2
- UniProtKB: A0A4X1W2H5 (UniProtKB/TrEMBL),   K7GLQ2 (UniProtKB/TrEMBL),   A0A8D0VWJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936507   ⟸   XM_021080848
- Peptide Label: isoform X9
- UniProtKB: A0A4X1W2J9 (UniProtKB/TrEMBL),   A0A8D0T5P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005673952   ⟸   XM_005673895
- Peptide Label: isoform X6
- UniProtKB: A0A8D0T5P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936514   ⟸   XM_021080855
- Peptide Label: isoform X15
- UniProtKB: A0A8D0T5P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936511   ⟸   XM_021080852
- Peptide Label: isoform X12
- UniProtKB: A0A8D0VVK2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005673953   ⟸   XM_005673896
- Peptide Label: isoform X8
- UniProtKB: A0A8D0VVK2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000071156   ⟸   ENSSSCT00000088402
Ensembl Acc Id: ENSSSCP00000065035   ⟸   ENSSSCT00000086067
Ensembl Acc Id: ENSSSCP00000071905   ⟸   ENSSSCT00000071106
Ensembl Acc Id: ENSSSCP00000029556   ⟸   ENSSSCT00000032734
Ensembl Acc Id: ENSSSCP00000013448   ⟸   ENSSSCT00000013830
Ensembl Acc Id: ENSSSCP00000028784   ⟸   ENSSSCT00000033549
Protein Domains
Helicase ATP-binding   Helicase C-terminal   SANT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012649 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025064131 UniProtKB/TrEMBL
  ENSSSCG00030019457 UniProtKB/TrEMBL
  ENSSSCG00035032572 UniProtKB/TrEMBL
  ENSSSCG00040017744 UniProtKB/TrEMBL
  ENSSSCG00050012659 UniProtKB/TrEMBL
  ENSSSCG00055004218 UniProtKB/TrEMBL
  ENSSSCG00060045447 UniProtKB/TrEMBL
  ENSSSCG00065059677 UniProtKB/TrEMBL
  ENSSSCG00070029416 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000013830 ENTREZGENE
  ENSSSCT00000013830.5 UniProtKB/TrEMBL
  ENSSSCT00000032734 ENTREZGENE
  ENSSSCT00000032734.4 UniProtKB/TrEMBL
  ENSSSCT00000033549 ENTREZGENE
  ENSSSCT00000033549.3 UniProtKB/TrEMBL
  ENSSSCT00000071106 ENTREZGENE
  ENSSSCT00000071106.1 UniProtKB/TrEMBL
  ENSSSCT00000088402 ENTREZGENE
  ENSSSCT00000088402.2 UniProtKB/TrEMBL
  ENSSSCT00025088022.1 UniProtKB/TrEMBL
  ENSSSCT00025088320.1 UniProtKB/TrEMBL
  ENSSSCT00025088604.1 UniProtKB/TrEMBL
  ENSSSCT00025088945.1 UniProtKB/TrEMBL
  ENSSSCT00025089271.1 UniProtKB/TrEMBL
  ENSSSCT00025089698.1 UniProtKB/TrEMBL
  ENSSSCT00030027053.1 UniProtKB/TrEMBL
  ENSSSCT00030027098.1 UniProtKB/TrEMBL
  ENSSSCT00030027113.1 UniProtKB/TrEMBL
  ENSSSCT00030027127.1 UniProtKB/TrEMBL
  ENSSSCT00030027147.1 UniProtKB/TrEMBL
  ENSSSCT00030027168.1 UniProtKB/TrEMBL
  ENSSSCT00030027188.1 UniProtKB/TrEMBL
  ENSSSCT00035043159.1 UniProtKB/TrEMBL
  ENSSSCT00035043164.1 UniProtKB/TrEMBL
  ENSSSCT00035043177.1 UniProtKB/TrEMBL
  ENSSSCT00035043184.1 UniProtKB/TrEMBL
  ENSSSCT00035043190.1 UniProtKB/TrEMBL
  ENSSSCT00035043207.1 UniProtKB/TrEMBL
  ENSSSCT00040024022.1 UniProtKB/TrEMBL
  ENSSSCT00040024049.1 UniProtKB/TrEMBL
  ENSSSCT00040024072.1 UniProtKB/TrEMBL
  ENSSSCT00050017090.1 UniProtKB/TrEMBL
  ENSSSCT00050017097.1 UniProtKB/TrEMBL
  ENSSSCT00050017122.1 UniProtKB/TrEMBL
  ENSSSCT00050017129.1 UniProtKB/TrEMBL
  ENSSSCT00050017134.1 UniProtKB/TrEMBL
  ENSSSCT00055008359.1 UniProtKB/TrEMBL
  ENSSSCT00055008367.1 UniProtKB/TrEMBL
  ENSSSCT00055008385.1 UniProtKB/TrEMBL
  ENSSSCT00055008392.1 UniProtKB/TrEMBL
  ENSSSCT00055008404.1 UniProtKB/TrEMBL
  ENSSSCT00055008415.1 UniProtKB/TrEMBL
  ENSSSCT00055008423.1 UniProtKB/TrEMBL
  ENSSSCT00060061667.1 UniProtKB/TrEMBL
  ENSSSCT00060061670.1 UniProtKB/TrEMBL
  ENSSSCT00060061686.1 UniProtKB/TrEMBL
  ENSSSCT00060061691.1 UniProtKB/TrEMBL
  ENSSSCT00060061707.1 UniProtKB/TrEMBL
  ENSSSCT00065081804.1 UniProtKB/TrEMBL
  ENSSSCT00065081816.1 UniProtKB/TrEMBL
  ENSSSCT00065081831.1 UniProtKB/TrEMBL
  ENSSSCT00070059229.1 UniProtKB/TrEMBL
  ENSSSCT00070059245.1 UniProtKB/TrEMBL
  ENSSSCT00070059258.1 UniProtKB/TrEMBL
  ENSSSCT00070059274.1 UniProtKB/TrEMBL
  ENSSSCT00070059289.1 UniProtKB/TrEMBL
  ENSSSCT00070059295.1 UniProtKB/TrEMBL
  ENSSSCT00070059328.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1040.30 UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  iswi atpase UniProtKB/TrEMBL
InterPro Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  ISWI_HAND-dom UniProtKB/TrEMBL
  ISWI_HAND-dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANT_dom UniProtKB/TrEMBL
  SLIDE UniProtKB/TrEMBL
  SMARCA1_N UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
KEGG Report ssc:100188905 UniProtKB/TrEMBL
NCBI Gene SMARCA1 ENTREZGENE
PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED UniProtKB/TrEMBL
  GLOBAL TRANSCRIPTION ACTIVATOR SNF2L1-RELATED UniProtKB/TrEMBL
  ISW-1 UniProtKB/TrEMBL
  SNF2/RAD54 HELICASE FAMILY UniProtKB/TrEMBL
Pfam HAND UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  SLIDE UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
Superfamily-SCOP SSF101224 UniProtKB/TrEMBL
  SSF46689 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A480JFY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W2H5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W2J9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W7H3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W7N5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W8A3_PIG UniProtKB/TrEMBL
  A0A4X1W8P8_PIG UniProtKB/TrEMBL
  A0A4X1W9M8 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R1U6 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R6D4_PIG UniProtKB/TrEMBL
  A0A8D0JFL2_PIG UniProtKB/TrEMBL
  A0A8D0JHH5_PIG UniProtKB/TrEMBL
  A0A8D0T5P6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VVK2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VVK5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VWJ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VYB1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TVE6 ENTREZGENE, UniProtKB/TrEMBL
  F1RTI9 ENTREZGENE, UniProtKB/TrEMBL
  K7GLQ2 ENTREZGENE, UniProtKB/TrEMBL
  K7GNV1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93225 ENTREZGENE