SFXN1 (sideroflexin 1) - Rat Genome Database

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Gene: SFXN1 (sideroflexin 1) Sus scrofa
Analyze
Symbol: SFXN1
Name: sideroflexin 1
RGD ID: 14285736
Description: ENCODES a protein that exhibits L-alanine transmembrane transporter activity (ortholog); L-serine transmembrane transporter activity (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); iron ion transport (ortholog); L-alanine transport (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Colorectal Neoplasms (ortholog); lung adenocarcinoma (ortholog); FOUND IN mitochondrial inner membrane (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: sideroflexin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl282,025,820 - 82,057,564 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1282,025,799 - 82,057,629 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2283,647,666 - 83,679,493 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SFXN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl282,025,820 - 82,057,564 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1282,025,799 - 82,057,629 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2283,647,666 - 83,679,493 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SFXN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385175,478,560 - 175,529,742 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5175,477,062 - 175,529,742 (+)EnsemblGRCh38hg38GRCh38
GRCh375174,905,563 - 174,956,745 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365174,838,189 - 174,888,218 (+)NCBINCBI36Build 36hg18NCBI36
Build 345174,838,188 - 174,888,218NCBI
Celera5170,944,525 - 170,994,642 (+)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5170,004,689 - 170,054,733 (+)NCBIHuRef
CHM1_15174,337,958 - 174,388,345 (+)NCBICHM1_1
T2T-CHM13v2.05176,022,352 - 176,073,526 (+)NCBIT2T-CHM13v2.0
Sfxn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391354,225,675 - 54,262,365 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1354,225,888 - 54,262,361 (+)EnsemblGRCm39 Ensembl
GRCm381354,071,656 - 54,108,346 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1354,071,869 - 54,108,342 (+)EnsemblGRCm38mm10GRCm38
MGSCv371354,167,214 - 54,203,715 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361354,081,490 - 54,117,966 (+)NCBIMGSCv36mm8
Celera1355,144,580 - 55,182,917 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1328.4NCBI
Sfxn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81710,491,315 - 10,527,793 (-)NCBIGRCr8
mRatBN7.21710,486,250 - 10,522,640 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1710,486,271 - 10,522,529 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1710,500,879 - 10,536,327 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01712,035,078 - 12,070,519 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01710,497,317 - 10,532,759 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01711,046,588 - 11,082,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1711,045,761 - 11,082,047 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01713,157,817 - 13,193,253 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41716,601,066 - 16,636,502 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11716,601,065 - 16,636,502 (-)NCBI
Celera1710,555,805 - 10,591,237 (-)NCBICelera
Cytogenetic Map17p14NCBI
Sfxn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540828,054,211 - 28,106,175 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540828,054,211 - 28,105,294 (+)NCBIChiLan1.0ChiLan1.0
SFXN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24170,608,863 - 170,660,457 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15168,748,446 - 168,798,866 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05170,825,507 - 170,876,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15177,726,518 - 177,776,344 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5177,738,961 - 177,775,212 (+)Ensemblpanpan1.1panPan2
SFXN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1437,485,360 - 37,517,743 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl437,487,438 - 37,512,289 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha437,431,872 - 37,472,432 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0437,851,035 - 37,891,568 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl437,851,044 - 37,891,597 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1437,675,678 - 37,716,181 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0437,863,646 - 37,904,164 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0438,373,604 - 38,414,131 (-)NCBIUU_Cfam_GSD_1.0
Sfxn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721392,004,958 - 92,032,126 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936609729,589 - 754,774 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936609727,621 - 754,806 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SFXN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12377,625,740 - 77,675,935 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2377,625,775 - 77,674,907 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666034912,795 - 964,512 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sfxn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473314,403,957 - 14,452,280 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473314,404,646 - 14,451,943 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SFXN1
786 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001098602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005654975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005654976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005654978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013987556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002339494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB271931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEMK02000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK343550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU942406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FP102066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01008905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000015362   ⟹   ENSSSCP00000014954
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl282,025,820 - 82,057,548 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000046888   ⟹   ENSSSCP00000038840
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl282,032,534 - 82,057,564 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000057681   ⟹   ENSSSCP00000039772
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl282,026,942 - 82,057,548 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000071919   ⟹   ENSSSCP00000069214
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl282,027,943 - 82,057,548 (-)Ensembl
RefSeq Acc Id: NM_001098602   ⟹   NP_001092072
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1282,027,840 - 82,057,557 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005654975   ⟹   XP_005655032
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1282,025,811 - 82,057,597 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005654976   ⟹   XP_005655033
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1282,025,811 - 82,057,601 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005654978   ⟹   XP_005655035
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1282,025,811 - 82,057,602 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013987556   ⟹   XP_013843010
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1282,026,638 - 82,057,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076502   ⟹   XP_020932161
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1282,025,811 - 82,057,598 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076511   ⟹   XP_020932170
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1282,025,811 - 82,049,906 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076513   ⟹   XP_020932172
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1282,026,638 - 82,057,600 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076518   ⟹   XP_020932177
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1282,036,575 - 82,057,599 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002339494
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1282,025,799 - 82,057,598 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005655035   ⟸   XM_005654978
- Peptide Label: isoform X1
- UniProtKB: A5A761 (UniProtKB/Swiss-Prot),   A0A287A7C0 (UniProtKB/TrEMBL),   A0A8D1LPD8 (UniProtKB/TrEMBL),   A0A8D0ISQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005655033   ⟸   XM_005654976
- Peptide Label: isoform X1
- UniProtKB: A5A761 (UniProtKB/Swiss-Prot),   A0A287A7C0 (UniProtKB/TrEMBL),   A0A8D1LPD8 (UniProtKB/TrEMBL),   A0A8D0ISQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932161   ⟸   XM_021076502
- Peptide Label: isoform X1
- UniProtKB: A5A761 (UniProtKB/Swiss-Prot),   A0A287A7C0 (UniProtKB/TrEMBL),   A0A8D1LPD8 (UniProtKB/TrEMBL),   A0A8D0ISQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005655032   ⟸   XM_005654975
- Peptide Label: isoform X1
- UniProtKB: A5A761 (UniProtKB/Swiss-Prot),   A0A287A7C0 (UniProtKB/TrEMBL),   A0A8D1LPD8 (UniProtKB/TrEMBL),   A0A8D0ISQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932170   ⟸   XM_021076511
- Peptide Label: isoform X1
- UniProtKB: A5A761 (UniProtKB/Swiss-Prot),   A0A287A7C0 (UniProtKB/TrEMBL),   A0A8D1LPD8 (UniProtKB/TrEMBL),   A0A8D0ISQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013843010   ⟸   XM_013987556
- Peptide Label: isoform X2
- UniProtKB: A0A287A7C0 (UniProtKB/TrEMBL),   A0A8D1LPD8 (UniProtKB/TrEMBL),   A0A8D0ISQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932172   ⟸   XM_021076513
- Peptide Label: isoform X2
- UniProtKB: A0A287A7C0 (UniProtKB/TrEMBL),   A0A8D1LPD8 (UniProtKB/TrEMBL),   A0A8D0ISQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001092072   ⟸   NM_001098602
- UniProtKB: A5A761 (UniProtKB/Swiss-Prot),   A0A287A7C0 (UniProtKB/TrEMBL),   A0A8D1LPD8 (UniProtKB/TrEMBL),   A0A8D0ISQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932177   ⟸   XM_021076518
- Peptide Label: isoform X3
- UniProtKB: A0A287A4Y6 (UniProtKB/TrEMBL),   A0A4X1SMH1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000014954   ⟸   ENSSSCT00000015362
Ensembl Acc Id: ENSSSCP00000038840   ⟸   ENSSSCT00000046888
Ensembl Acc Id: ENSSSCP00000069214   ⟸   ENSSSCT00000071919
Ensembl Acc Id: ENSSSCP00000039772   ⟸   ENSSSCT00000057681


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014063 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00015016138 UniProtKB/Swiss-Prot
  ENSSSCG00025069939 UniProtKB/Swiss-Prot
  ENSSSCG00030036591 UniProtKB/Swiss-Prot
  ENSSSCG00040072474 UniProtKB/Swiss-Prot
  ENSSSCG00045003198 UniProtKB/Swiss-Prot
  ENSSSCG00050019804 UniProtKB/Swiss-Prot
  ENSSSCG00055001836 UniProtKB/Swiss-Prot
  ENSSSCG00060013360 UniProtKB/Swiss-Prot
  ENSSSCG00065017983 UniProtKB/Swiss-Prot
  ENSSSCG00070002048 UniProtKB/Swiss-Prot
  ENSSSCG00085015819 UniProtKB/Swiss-Prot
  ENSSSCG00105040033 UniProtKB/Swiss-Prot
  ENSSSCG00110015856 UniProtKB/Swiss-Prot
  ENSSSCG00115016961 UniProtKB/Swiss-Prot
  ENSSSCG00130034574 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000015362 ENTREZGENE
  ENSSSCT00000015362.5 UniProtKB/Swiss-Prot
  ENSSSCT00000046888 ENTREZGENE
  ENSSSCT00000071919 ENTREZGENE
  ENSSSCT00015021483.1 UniProtKB/Swiss-Prot
  ENSSSCT00025096112.1 UniProtKB/Swiss-Prot
  ENSSSCT00030050889.1 UniProtKB/Swiss-Prot
  ENSSSCT00040099930.1 UniProtKB/Swiss-Prot
  ENSSSCT00045005202.1 UniProtKB/Swiss-Prot
  ENSSSCT00050026751.1 UniProtKB/Swiss-Prot
  ENSSSCT00055003418.1 UniProtKB/Swiss-Prot
  ENSSSCT00060017605.1 UniProtKB/Swiss-Prot
  ENSSSCT00065023903.1 UniProtKB/Swiss-Prot
  ENSSSCT00070003874.1 UniProtKB/Swiss-Prot
  ENSSSCT00070003879.1 UniProtKB/Swiss-Prot
  ENSSSCT00085030100 UniProtKB/Swiss-Prot
  ENSSSCT00105076360 UniProtKB/Swiss-Prot
  ENSSSCT00110030263 UniProtKB/Swiss-Prot
  ENSSSCT00115029792 UniProtKB/Swiss-Prot
  ENSSSCT00130067603 UniProtKB/Swiss-Prot
InterPro Mtc UniProtKB/Swiss-Prot
KEGG Report ssc:100049699 UniProtKB/Swiss-Prot
NCBI Gene SFXN1 ENTREZGENE
PANTHER PTHR11153 UniProtKB/Swiss-Prot
  SIDEROFLEXIN-1 UniProtKB/Swiss-Prot
Pfam Mtc UniProtKB/Swiss-Prot
UniProt A0A287A4Y6 ENTREZGENE, UniProtKB/TrEMBL
  A0A287A7C0 ENTREZGENE
  A0A4X1SMF0_PIG UniProtKB/TrEMBL
  A0A4X1SMH1 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QW82_PIG UniProtKB/TrEMBL
  A0A8D0IEG7_PIG UniProtKB/TrEMBL
  A0A8D0ISQ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MTQ0_PIG UniProtKB/TrEMBL
  A0A8D0MWY8_PIG UniProtKB/TrEMBL
  A0A8D1LPD8 ENTREZGENE, UniProtKB/TrEMBL
  A5A761 ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID VGNC:92783 ENTREZGENE