RECQL4 (RecQ like helicase 4) - Rat Genome Database

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Gene: RECQL4 (RecQ like helicase 4) Sus scrofa
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Symbol: RECQL4
Name: RecQ like helicase 4
RGD ID: 14280043
Description: ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); INVOLVED IN negative regulation of sister chromatid cohesion (ortholog); pigmentation (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH B-lymphoblastic leukemia/lymphoma with ETV6-RUNX1 (ortholog); Baller-Gerold syndrome (ortholog); breast cancer (ortholog); FOUND IN chromosome, telomeric region (inferred); nucleoplasm (inferred); nucleus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-dependent DNA helicase Q4; RecQ protein-like 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4287,214 - 293,913 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14287,206 - 293,629 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24378,111 - 384,633 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RECQL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4287,214 - 293,913 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14287,206 - 293,629 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24378,111 - 384,633 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RECQL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388144,511,288 - 144,517,833 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,511,288 - 144,517,845 (-)EnsemblGRCh38hg38GRCh38
GRCh378145,736,671 - 145,743,217 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,707,479 - 145,714,008 (-)NCBINCBI36Build 36hg18NCBI36
Build 348145,707,621 - 145,713,976NCBI
Celera8141,912,140 - 141,918,890 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8140,849,825 - 140,856,695 (-)NCBIHuRef
CHM1_18145,774,859 - 145,781,399 (-)NCBICHM1_1
T2T-CHM13v2.08145,681,054 - 145,688,017 (-)NCBIT2T-CHM13v2.0
Recql4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,587,753 - 76,594,820 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,587,753 - 76,594,748 (-)EnsemblGRCm39 Ensembl
GRCm381576,703,553 - 76,710,616 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,703,553 - 76,710,548 (-)EnsemblGRCm38mm10GRCm38
MGSCv371576,534,171 - 76,540,906 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,530,996 - 76,537,731 (-)NCBIMGSCv36mm8
Celera1578,197,351 - 78,204,086 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.28NCBI
Recql4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,304,092 - 110,311,426 (-)NCBIGRCr8
mRatBN7.27108,423,453 - 108,430,790 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,423,455 - 108,430,619 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7110,165,377 - 110,172,538 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07112,388,951 - 112,396,112 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07112,349,701 - 112,356,865 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,765,892 - 117,773,128 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,763,783 - 117,773,134 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,753,871 - 117,761,090 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,752,863 - 114,760,027 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,787,094 - 114,794,223 (-)NCBI
Celera7104,773,347 - 104,780,504 (-)NCBICelera
Cytogenetic Map7q34NCBI
Recql4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554543,136,216 - 3,142,422 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554543,136,097 - 3,142,525 (-)NCBIChiLan1.0ChiLan1.0
RECQL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27162,002,577 - 162,011,841 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,531,815 - 137,541,127 (-)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl8144,267,101 - 144,276,985 (-)Ensemblpanpan1.1panPan2
RECQL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,930,906 - 37,936,653 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,930,621 - 37,936,753 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,891,440 - 37,897,555 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01338,404,421 - 38,410,540 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1338,404,634 - 38,410,081 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11338,096,373 - 38,102,486 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01338,204,789 - 38,210,471 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,681,262 - 38,687,377 (-)NCBIUU_Cfam_GSD_1.0
Recql4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303329,124 - 335,703 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364707,755,253 - 7,761,705 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RECQL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,725,494 - 138,732,286 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,725,633 - 138,732,096 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660391,122,625 - 1,129,469 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Recql4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,345,844 - 12,351,637 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,345,326 - 12,351,783 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RECQL4
86 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSSCT00000006463   ⟹   ENSSSCP00000076331
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4287,261 - 293,628 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000093632   ⟹   ENSSSCP00000078766
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4287,261 - 293,913 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000094791   ⟹   ENSSSCP00000074824
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4287,239 - 293,625 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000097441   ⟹   ENSSSCP00000078159
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4287,214 - 293,627 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000098428   ⟹   ENSSSCP00000079060
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4287,261 - 293,628 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000099654   ⟹   ENSSSCP00000079845
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4287,261 - 293,628 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000099854   ⟹   ENSSSCP00000080370
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4287,261 - 293,627 (+)Ensembl
RefSeq Acc Id: XM_013996385   ⟹   XP_013851839
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14287,206 - 293,628 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013996386   ⟹   XP_013851840
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14287,206 - 293,629 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013996387   ⟹   XP_013851841
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14287,206 - 293,628 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013996389   ⟹   XP_013851843
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14287,236 - 293,623 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013996390   ⟹   XP_013851844
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14287,206 - 293,629 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013996391   ⟹   XP_013851845
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14287,246 - 293,628 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021090414   ⟹   XP_020946073
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14287,245 - 293,628 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021090415   ⟹   XP_020946074
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14287,206 - 293,628 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013851844   ⟸   XM_013996390
- Peptide Label: isoform X6
- UniProtKB: A0A480TKR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013851840   ⟸   XM_013996386
- Peptide Label: isoform X2
- UniProtKB: A0A480L3K8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013851839   ⟸   XM_013996385
- Peptide Label: isoform X1
- UniProtKB: A0A480L3K8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013851841   ⟸   XM_013996387
- Peptide Label: isoform X3
- UniProtKB: A0A480L3K8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946074   ⟸   XM_021090415
- Peptide Label: isoform X7
- UniProtKB: A0A480L3K8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013851843   ⟸   XM_013996389
- Peptide Label: isoform X4
- UniProtKB: A0A480L3K8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946073   ⟸   XM_021090414
- Peptide Label: isoform X5
- UniProtKB: A0A480L3K8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013851845   ⟸   XM_013996391
- Peptide Label: isoform X8
- UniProtKB: A0A8W4F6M8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000078159   ⟸   ENSSSCT00000097441
Ensembl Acc Id: ENSSSCP00000079845   ⟸   ENSSSCT00000099654
Ensembl Acc Id: ENSSSCP00000080370   ⟸   ENSSSCT00000099854
Ensembl Acc Id: ENSSSCP00000076331   ⟸   ENSSSCT00000006463
Ensembl Acc Id: ENSSSCP00000079060   ⟸   ENSSSCT00000098428
Ensembl Acc Id: ENSSSCP00000078766   ⟸   ENSSSCT00000093632
Ensembl Acc Id: ENSSSCP00000074824   ⟸   ENSSSCT00000094791

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000025736 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006463.5 UniProtKB/TrEMBL
  ENSSSCT00000093632.1 UniProtKB/TrEMBL
  ENSSSCT00000094791 ENTREZGENE
  ENSSSCT00000094791.1 UniProtKB/TrEMBL
  ENSSSCT00000097441 ENTREZGENE
  ENSSSCT00000097441.1 UniProtKB/TrEMBL
  ENSSSCT00000098428.1 UniProtKB/TrEMBL
  ENSSSCT00000099654.1 UniProtKB/TrEMBL
  ENSSSCT00000099854 ENTREZGENE
  ENSSSCT00000099854.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1460 UniProtKB/TrEMBL
  P-loop containing nucleotide triphosphate hydrolases UniProtKB/TrEMBL
  Zinc finger, CCHC-type UniProtKB/TrEMBL
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/TrEMBL
  DNA_helicase_ATP-dep_RecQ UniProtKB/TrEMBL
  DNA_rep_checkpnt_protein UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
NCBI Gene RECQL4 ENTREZGENE
PANTHER ATP-DEPENDENT DNA HELICASE Q4 UniProtKB/TrEMBL
  DNA HELICASE RECQ FAMILY MEMBER UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  Drc1-Sld2 UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  zf-CCHC UniProtKB/TrEMBL
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  ZF_CCHC UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  ZnF_C2HC UniProtKB/TrEMBL
Superfamily-SCOP P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL
  Retrovirus zinc finger-like domains UniProtKB/TrEMBL
UniProt A0A480L3K8 ENTREZGENE, UniProtKB/TrEMBL
  A0A480TKR4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F6M8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FAB9_PIG UniProtKB/TrEMBL
  A0A8W4FFF5_PIG UniProtKB/TrEMBL
  A0A8W4FH55_PIG UniProtKB/TrEMBL
  A0A8W4FHY9_PIG UniProtKB/TrEMBL
  A0A8W4FNG8_PIG UniProtKB/TrEMBL
  A0A8W4FPX1_PIG UniProtKB/TrEMBL