SLC25A47 (solute carrier family 25 member 47) - Rat Genome Database

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Gene: SLC25A47 (solute carrier family 25 member 47) Sus scrofa
Analyze
Symbol: SLC25A47
Name: solute carrier family 25 member 47
RGD ID: 14271536
Description: ENCODES a protein that exhibits acetyl-CoA transmembrane transporter activity (inferred); NAD transmembrane transporter activity (inferred); INVOLVED IN acetyl-CoA transport (inferred); NAD transmembrane transport (inferred); transmembrane transport (inferred); ASSOCIATED WITH hepatocellular carcinoma (ortholog); prostate cancer (ortholog); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrial outer membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7121,192,433 - 121,210,374 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17121,204,213 - 121,210,376 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27128,664,421 - 128,674,962 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC25A47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7121,192,433 - 121,210,374 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17121,204,213 - 121,210,376 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27128,664,421 - 128,674,962 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814100,323,339 - 100,330,421 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14100,323,339 - 100,330,421 (+)EnsemblGRCh38hg38GRCh38
GRCh3714100,789,676 - 100,796,758 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361499,859,432 - 99,866,468 (+)NCBINCBI36Build 36hg18NCBI36
Build 341499,859,431 - 99,866,468NCBI
Celera1480,844,304 - 80,851,341 (+)NCBICelera
Cytogenetic Map14q32.2NCBI
HuRef1480,971,027 - 80,978,064 (+)NCBIHuRef
CHM1_114100,727,449 - 100,734,485 (+)NCBICHM1_1
T2T-CHM13v2.01494,556,363 - 94,563,446 (+)NCBIT2T-CHM13v2.0
Slc25a47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912108,815,740 - 108,822,741 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12108,801,972 - 108,822,741 (+)EnsemblGRCm39 Ensembl
GRCm3812108,849,833 - 108,856,815 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12108,836,046 - 108,856,815 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,089,339 - 110,095,025 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612109,298,936 - 109,304,622 (+)NCBIMGSCv36mm8
Celera12110,089,936 - 110,095,631 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1259.65NCBI
Slc25a47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86133,531,741 - 133,537,375 (+)NCBIGRCr8
mRatBN7.26127,767,365 - 127,773,000 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6127,767,305 - 127,773,005 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6127,890,369 - 127,896,003 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06128,185,415 - 128,191,049 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06127,544,781 - 127,550,416 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06132,762,306 - 132,767,940 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6132,762,280 - 132,768,379 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06141,932,382 - 141,938,016 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46133,192,144 - 133,197,778 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16133,198,330 - 133,203,965 (+)NCBI
Celera6125,318,263 - 125,323,897 (+)NCBICelera
Cytogenetic Map6q32NCBI
Slc25a47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543821,408,652 - 21,413,445 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543821,406,270 - 21,413,946 (+)NCBIChiLan1.0ChiLan1.0
SLC25A47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215101,458,295 - 101,483,417 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114100,674,789 - 100,701,046 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01480,927,765 - 80,952,992 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114100,258,385 - 100,265,491 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14100,258,391 - 100,265,448 (+)Ensemblpanpan1.1panPan2
SLC25A47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1868,602,525 - 68,607,364 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl868,602,662 - 68,606,875 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha868,121,285 - 68,126,096 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0868,886,399 - 68,891,210 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl868,886,178 - 68,890,947 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1868,548,276 - 68,553,086 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0868,614,426 - 68,619,237 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0869,011,866 - 69,016,682 (+)NCBIUU_Cfam_GSD_1.0
Slc25a47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086406,100,896 - 6,105,914 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366043,978,061 - 3,980,958 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366043,976,677 - 3,981,572 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103229692
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12478,285,089 - 78,292,562 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2478,285,593 - 78,292,773 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605365,426,727 - 65,431,443 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247343,817,097 - 3,821,680 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247343,816,570 - 3,821,437 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC25A47
282 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 3 18 2 5 12 11 18 2 3 3

Sequence


Ensembl Acc Id: ENSSSCT00000002793   ⟹   ENSSSCP00000002722
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7121,192,450 - 121,210,374 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000066628   ⟹   ENSSSCP00000062498
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7121,192,433 - 121,210,372 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000082024   ⟹   ENSSSCP00000067478
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7121,192,450 - 121,210,377 (+)Ensembl
RefSeq Acc Id: XM_003128729   ⟹   XP_003128777
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17121,204,213 - 121,210,376 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099729   ⟹   XP_020955388
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17121,204,227 - 121,210,065 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003128777   ⟸   XM_003128729
- Peptide Label: isoform X1
- UniProtKB: A0A5G2QEA1 (UniProtKB/TrEMBL),   A0A4X1TID6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955388   ⟸   XM_021099729
- Peptide Label: isoform X2
- UniProtKB: A0A4X1TID6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000002722   ⟸   ENSSSCT00000002793
Ensembl Acc Id: ENSSSCP00000062498   ⟸   ENSSSCT00000066628
Ensembl Acc Id: ENSSSCP00000067478   ⟸   ENSSSCT00000082024


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002515 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015012255 UniProtKB/TrEMBL
  ENSSSCG00030001836 UniProtKB/TrEMBL
  ENSSSCG00035039108 UniProtKB/TrEMBL
  ENSSSCG00045014858 UniProtKB/TrEMBL
  ENSSSCG00050034208 UniProtKB/TrEMBL
  ENSSSCG00055025462 UniProtKB/TrEMBL
  ENSSSCG00065053149 UniProtKB/TrEMBL
  ENSSSCG00070010195 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002793.5 UniProtKB/TrEMBL
  ENSSSCT00000066628 ENTREZGENE
  ENSSSCT00000066628.1 UniProtKB/TrEMBL
  ENSSSCT00015016139.1 UniProtKB/TrEMBL
  ENSSSCT00015016171.1 UniProtKB/TrEMBL
  ENSSSCT00015016180.1 UniProtKB/TrEMBL
  ENSSSCT00030002343.1 UniProtKB/TrEMBL
  ENSSSCT00030002357.1 UniProtKB/TrEMBL
  ENSSSCT00030002372.1 UniProtKB/TrEMBL
  ENSSSCT00035051934.1 UniProtKB/TrEMBL
  ENSSSCT00035051938.1 UniProtKB/TrEMBL
  ENSSSCT00035051944.1 UniProtKB/TrEMBL
  ENSSSCT00045025234.1 UniProtKB/TrEMBL
  ENSSSCT00045025267.1 UniProtKB/TrEMBL
  ENSSSCT00045025296.1 UniProtKB/TrEMBL
  ENSSSCT00050045867.1 UniProtKB/TrEMBL
  ENSSSCT00050045873.1 UniProtKB/TrEMBL
  ENSSSCT00055050290.1 UniProtKB/TrEMBL
  ENSSSCT00055050338.1 UniProtKB/TrEMBL
  ENSSSCT00055050400.1 UniProtKB/TrEMBL
  ENSSSCT00065072783.1 UniProtKB/TrEMBL
  ENSSSCT00065072795.1 UniProtKB/TrEMBL
  ENSSSCT00065072799.1 UniProtKB/TrEMBL
  ENSSSCT00070019818.1 UniProtKB/TrEMBL
  ENSSSCT00070019823.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_Carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100515556 UniProtKB/TrEMBL
NCBI Gene SLC25A47 ENTREZGENE
PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 MEMBER 47 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A4X1TID6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TMS4_PIG UniProtKB/TrEMBL
  A0A5G2QEA1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MN72_PIG UniProtKB/TrEMBL
  A0A8D0MNB9_PIG UniProtKB/TrEMBL
  A0A8D0TW42_PIG UniProtKB/TrEMBL
  A0A8D1HFS5_PIG UniProtKB/TrEMBL
  F1SAP2_PIG UniProtKB/TrEMBL
UniProt Secondary F1SAP7 UniProtKB/TrEMBL
VGNC ID VGNC:93020 ENTREZGENE