ADA (adenosine deaminase) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: ADA (adenosine deaminase) Sus scrofa
Analyze
Symbol: ADA
Name: adenosine deaminase
RGD ID: 14266863
Description: ENCODES a protein that exhibits adenosine deaminase activity (ortholog); purine nucleoside binding (ortholog); INVOLVED IN adenosine catabolic process (ortholog); adenosine metabolic process (ortholog); alpha-beta T cell differentiation (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH adenosine deaminase deficiency (ortholog); asthma (ortholog); autism spectrum disorder (ortholog); FOUND IN dendrite cytoplasm (ortholog); extracellular space (ortholog); neuronal cell body (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1747,044,497 - 47,072,245 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11747,044,492 - 47,072,232 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21752,502,115 - 52,544,469 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
adenosine deaminase deficiency  (ISO)
asthma  (ISO)
autism spectrum disorder  (ISO)
autistic disorder  (ISO)
Brain Hypoxia-Ischemia  (ISO)
Cadmium Poisoning  (ISO)
Chemical and Drug Induced Liver Injury  (ISO)
colon cancer  (ISO)
colorectal cancer  (ISO)
Coronary Disease  (ISO)
diabetes mellitus  (ISO)
Experimental Diabetes Mellitus  (ISO)
Experimental Liver Cirrhosis  (ISO)
familial hyperlipidemia  (ISO)
focal epilepsy  (ISO)
gastric ulcer  (ISO)
genetic disease  (ISO)
Hyperemia  (ISO)
hyperglycemia  (ISO)
hypertension  (ISO)
Hypertriglyceridemia  (ISO)
laryngeal squamous cell carcinoma  (ISO)
Legionnaires' disease  (ISO)
leptospirosis  (ISO)
lung disease  (ISO)
Lung Neoplasms  (ISO)
lung non-small cell carcinoma  (ISO)
lymphopenia  (ISO)
malignant mesothelioma  (ISO)
Malignant Pleural Effusions  (ISO)
Mycoplasma pneumoniae pneumonia  (ISO)
Myocardial Reperfusion Injury  (ISO)
obesity  (ISO)
oral cavity cancer  (ISO)
oral squamous cell carcinoma  (ISO)
peritonitis  (ISO)
Pleural Effusion  (ISO)
pleural tuberculosis  (ISO)
pleurisy  (ISO)
primary immunodeficiency disease  (ISO)
pulmonary edema  (ISO)
pulmonary sarcoidosis  (ISO)
pulmonary tuberculosis  (ISO)
Q fever  (ISO)
severe combined immunodeficiency  (ISO)
severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive  (ISO)
spinal cord disease  (ISO)
sporotrichosis  (ISO)
stomach cancer  (ISO)
T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations  (ISO)
tongue squamous cell carcinoma  (ISO)
trypanosomiasis  (ISO)
type 2 diabetes mellitus  (ISO)
uterine fibroid  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adenosine catabolic process  (IBA,IEA,ISO)
adenosine metabolic process  (IEA,ISO)
allantoin metabolic process  (IEA)
alpha-beta T cell differentiation  (IEA,ISO)
amide catabolic process  (IEA)
AMP catabolic process  (IEA)
AMP salvage  (IEA)
apoptotic process  (IEA,ISO)
B cell proliferation  (IEA,ISO)
calcium-mediated signaling  (IEA,ISO)
dAMP catabolic process  (IEA)
dATP catabolic process  (IEA,ISO)
deoxyadenosine catabolic process  (IEA,ISO)
embryonic digestive tract development  (IEA,ISO)
germinal center B cell differentiation  (IEA,ISO)
germinal center formation  (IEA,ISO)
GMP salvage  (IEA)
histamine secretion  (ISO)
hypoxanthine biosynthetic process  (IEA,ISO)
hypoxanthine salvage  (IBA)
in utero embryonic development  (IEA,ISO)
inosine biosynthetic process  (IBA,IEA,ISO)
leukocyte migration  (IEA,ISO)
liver development  (IEA,ISO)
lung alveolus development  (IEA,ISO)
lung development  (IEA,ISO)
mature B cell apoptotic process  (IEA,ISO)
mucus secretion  (IEA,ISO)
negative regulation of adenosine receptor signaling pathway  (IBA,IEA)
negative regulation of apoptotic process  (IEA,ISO)
negative regulation of circadian sleep/wake cycle, non-REM sleep  (ISO)
negative regulation of inflammatory response  (IEA,ISO)
negative regulation of leukocyte migration  (IEA,ISO)
negative regulation of mature B cell apoptotic process  (IEA,ISO)
negative regulation of mucus secretion  (IEA,ISO)
negative regulation of penile erection  (IEA,ISO)
negative regulation of thymocyte apoptotic process  (IEA,ISO)
nucleotide metabolic process  (IEA)
penile erection  (IEA,ISO)
Peyer's patch development  (IEA,ISO)
placenta development  (IEA,ISO)
positive regulation of alpha-beta T cell differentiation  (IEA,ISO)
positive regulation of B cell proliferation  (IEA,ISO)
positive regulation of calcium-mediated signaling  (IEA,ISO)
positive regulation of germinal center formation  (IEA,ISO)
positive regulation of heart rate  (IEA,ISO)
positive regulation of smooth muscle contraction  (IEA,ISO)
positive regulation of T cell activation  (IEA,ISO)
positive regulation of T cell differentiation  (IEA,ISO)
positive regulation of T cell differentiation in thymus  (IEA,ISO)
positive regulation of T cell receptor signaling pathway  (IEA,ISO)
purine nucleotide salvage  (IEA)
purine ribonucleoside monophosphate biosynthetic process  (IEA)
regulation of cell-cell adhesion mediated by integrin  (IEA)
regulation of circadian sleep/wake cycle, sleep  (ISO)
regulation of T cell differentiation  (IEA,ISO)
regulation of T cell differentiation in thymus  (ISO)
response to cadmium ion  (ISO)
response to hydrogen peroxide  (ISO)
response to hypoxia  (IEA,ISO)
response to L-arginine  (ISO)
response to purine-containing compound  (IEA)
response to vitamin E  (ISO)
response to xenobiotic stimulus  (ISO)
smooth muscle contraction  (IEA,ISO)
T cell activation  (IBA,IEA,ISO)
T cell differentiation  (IEA,ISO)
T cell differentiation in thymus  (IEA,ISO)
T cell receptor signaling pathway  (IEA,ISO)
thymocyte apoptotic process  (IEA,ISO)
trophectodermal cell differentiation  (IEA,ISO)
xanthine biosynthetic process  (IEA,ISO)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ADA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1747,044,497 - 47,072,245 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11747,044,492 - 47,072,232 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21752,502,115 - 52,544,469 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382044,619,522 - 44,651,699 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2044,584,896 - 44,652,252 (-)EnsemblGRCh38hg38GRCh38
GRCh372043,248,163 - 43,280,340 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362042,681,577 - 42,713,790 (-)NCBINCBI36Build 36hg18NCBI36
Build 342042,681,577 - 42,713,790NCBI
Celera2039,956,805 - 39,989,017 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2039,989,704 - 40,021,872 (-)NCBIHuRef
CHM1_12043,151,279 - 43,183,492 (-)NCBICHM1_1
T2T-CHM13v2.02046,355,294 - 46,387,474 (-)NCBIT2T-CHM13v2.0
Ada
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392163,565,703 - 163,592,154 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2163,568,504 - 163,592,159 (-)EnsemblGRCm39 Ensembl
GRCm382163,726,571 - 163,750,239 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2163,726,584 - 163,750,239 (-)EnsemblGRCm38mm10GRCm38
MGSCv372163,552,320 - 163,575,913 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362163,418,025 - 163,441,618 (-)NCBIMGSCv36mm8
Celera2169,670,309 - 169,693,933 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map284.44NCBI
Ada
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83172,818,174 - 172,842,283 (-)NCBIGRCr8
mRatBN7.23152,398,745 - 152,422,854 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3152,398,747 - 152,447,088 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3156,206,205 - 156,230,314 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03164,705,138 - 164,729,255 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03162,449,261 - 162,473,358 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03160,115,840 - 160,139,947 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3160,115,842 - 160,139,947 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03166,306,001 - 166,330,108 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43154,636,530 - 154,660,637 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13154,542,567 - 154,566,673 (-)NCBI
Celera3151,051,040 - 151,075,153 (-)NCBICelera
Cytogenetic Map3q42NCBI
Ada
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544512,696,096 - 12,717,488 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544512,696,096 - 12,717,488 (+)NCBIChiLan1.0ChiLan1.0
ADA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22150,352,747 - 50,384,972 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12050,345,850 - 50,378,060 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02040,950,238 - 40,982,481 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12042,044,613 - 42,076,868 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2042,044,613 - 42,076,868 (-)Ensemblpanpan1.1panPan2
ADA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12432,083,786 - 32,119,810 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2432,083,931 - 32,111,160 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2431,725,150 - 31,756,275 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02432,790,716 - 32,821,895 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2432,790,730 - 32,818,187 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12432,052,411 - 32,083,510 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02432,167,117 - 32,198,181 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02432,708,375 - 32,739,510 (-)NCBIUU_Cfam_GSD_1.0
Ada
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640181,082,150 - 181,103,907 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365302,217,713 - 2,224,070 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1219,167,209 - 19,200,233 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605067,836,179 - 67,868,616 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ada
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247909,809,492 - 9,829,883 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247909,809,550 - 9,829,199 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ADA
1029 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000030066   ⟹   ENSSSCP00000022085
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1747,045,121 - 47,064,473 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000081342   ⟹   ENSSSCP00000068511
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1747,044,497 - 47,072,245 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000086571   ⟹   ENSSSCP00000070139
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1747,045,121 - 47,061,955 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000089003   ⟹   ENSSSCP00000070890
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1747,044,497 - 47,072,245 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000091703   ⟹   ENSSSCP00000076976
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1747,044,497 - 47,061,820 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000106832   ⟹   ENSSSCP00000080090
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1747,045,121 - 47,063,709 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000107202   ⟹   ENSSSCP00000081596
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1747,044,497 - 47,072,245 (-)Ensembl
RefSeq Acc Id: XM_021077978   ⟹   XP_020933637
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11747,044,492 - 47,072,232 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020933637 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000022085.2
  ENSSSCP00000068511
  ENSSSCP00000068511.1
  ENSSSCP00000070139.1
  ENSSSCP00000070890.1
  ENSSSCP00000076976.1
  ENSSSCP00000080090.1
GenBank Protein JAG69746 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_020933637   ⟸   XM_021077978
- UniProtKB: A0A0B8RW47 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000022085   ⟸   ENSSSCT00000030066
Ensembl Acc Id: ENSSSCP00000070890   ⟸   ENSSSCT00000089003
Ensembl Acc Id: ENSSSCP00000070139   ⟸   ENSSSCT00000086571
Ensembl Acc Id: ENSSSCP00000068511   ⟸   ENSSSCT00000081342
Ensembl Acc Id: ENSSSCP00000076976   ⟸   ENSSSCT00000091703
Ensembl Acc Id: ENSSSCP00000080090   ⟸   ENSSSCT00000106832
Ensembl Acc Id: ENSSSCP00000081596   ⟸   ENSSSCT00000107202
Protein Domains
Adenosine deaminase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021255 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000030066.2 UniProtKB/TrEMBL
  ENSSSCT00000081342 ENTREZGENE
  ENSSSCT00000081342.2 UniProtKB/TrEMBL
  ENSSSCT00000086571.1 UniProtKB/TrEMBL
  ENSSSCT00000089003.2 UniProtKB/TrEMBL
  ENSSSCT00000091703.1 UniProtKB/TrEMBL
  ENSSSCT00000106832.1 UniProtKB/TrEMBL
Gene3D-CATH Metal-dependent hydrolases UniProtKB/TrEMBL
InterPro A/AMP_deam_AS UniProtKB/TrEMBL
  A/AMP_deaminase_dom UniProtKB/TrEMBL
  A_deaminase UniProtKB/TrEMBL
  Ado/ade_deaminase UniProtKB/TrEMBL
  Metal_Hydrolase UniProtKB/TrEMBL
NCBI Gene ADA ENTREZGENE
PANTHER ADENOSINE DEAMINASE UniProtKB/TrEMBL
  PTHR11409 UniProtKB/TrEMBL
Pfam A_deaminase UniProtKB/TrEMBL
PROSITE A_DEAMINASE UniProtKB/TrEMBL
Superfamily-SCOP SSF51556 UniProtKB/TrEMBL
UniProt A0A0B8RW47 ENTREZGENE
  A0A5G2QU98_PIG UniProtKB/TrEMBL
  A0A5G2R146_PIG UniProtKB/TrEMBL
  A0A5G2RG61_PIG UniProtKB/TrEMBL
  A0A8W4FF85_PIG UniProtKB/TrEMBL
  A0A8W4FP59_PIG UniProtKB/TrEMBL
  I3LDF4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95889 ENTREZGENE