RHCG (Rh family C glycoprotein) - Rat Genome Database

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Gene: RHCG (Rh family C glycoprotein) Sus scrofa
Analyze
Symbol: RHCG
Name: Rh family C glycoprotein
RGD ID: 14244093
Description: ENCODES a protein that exhibits ammonium channel activity (ortholog); ankyrin binding (ortholog); carbon dioxide transmembrane transporter activity (ortholog); INVOLVED IN ammonium transmembrane transport (ortholog); intracellular monoatomic ion homeostasis (ortholog); transepithelial ammonium transport (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); D-2-hydroxyglutaric aciduria 2 (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog); INTERACTS WITH zearalenone
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ammonium transporter Rh type C; rh family type C glycoprotein; rh type C glycoprotein; rhesus blood group family type C glycoprotein; Rhesus type C glycoprotein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl755,046,245 - 55,071,475 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1755,046,244 - 55,071,504 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2760,022,002 - 60,039,452 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
zearalenone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RHCG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl755,046,245 - 55,071,475 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1755,046,244 - 55,071,504 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2760,022,002 - 60,039,452 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RHCG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381589,471,407 - 89,496,583 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1589,471,398 - 89,496,589 (-)EnsemblGRCh38hg38GRCh38
GRCh371590,014,638 - 90,039,814 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361587,815,642 - 87,840,803 (-)NCBINCBI36Build 36hg18NCBI36
Build 341587,815,645 - 87,840,803NCBI
Celera1566,417,127 - 66,442,288 (-)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1566,127,581 - 66,152,746 (-)NCBIHuRef
CHM1_11589,855,641 - 89,880,764 (-)NCBICHM1_1
T2T-CHM13v2.01587,227,437 - 87,252,613 (-)NCBIT2T-CHM13v2.0
Rhcg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,243,111 - 79,267,405 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,243,111 - 79,267,405 (-)EnsemblGRCm39 Ensembl
GRCm38779,593,363 - 79,617,657 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl779,593,363 - 79,617,657 (-)EnsemblGRCm38mm10GRCm38
MGSCv37786,738,249 - 86,762,543 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36779,466,882 - 79,491,161 (-)NCBIMGSCv36mm8
Celera776,996,917 - 77,021,608 (-)NCBICelera
Cytogenetic Map7D2NCBI
cM Map745.09NCBI
Rhcg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81142,941,046 - 142,965,242 (-)NCBIGRCr8
mRatBN7.21133,531,704 - 133,555,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,531,716 - 133,555,876 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1141,441,386 - 141,465,168 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01148,610,769 - 148,634,552 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01141,528,475 - 141,552,260 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01141,325,854 - 141,349,881 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1141,325,856 - 141,349,881 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01142,286,922 - 142,310,949 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41135,361,418 - 135,386,461 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11135,439,824 - 135,464,867 (-)NCBI
Celera1125,594,825 - 125,618,934 (-)NCBICelera
Cytogenetic Map1q31NCBI
Rhcg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541615,639,551 - 15,654,293 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541615,639,425 - 15,657,708 (+)NCBIChiLan1.0ChiLan1.0
RHCG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21679,021,969 - 79,050,885 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11582,726,346 - 82,755,232 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01568,165,708 - 68,190,964 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11587,372,238 - 87,397,011 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1587,372,238 - 87,397,011 (-)Ensemblpanpan1.1panPan2
RHCG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1352,503,172 - 52,526,362 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl352,503,176 - 52,526,719 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha355,136,730 - 55,159,917 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0352,919,695 - 52,942,920 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl352,918,628 - 52,943,290 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1352,441,812 - 52,464,994 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0352,652,116 - 52,675,289 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0352,992,155 - 53,015,328 (-)NCBIUU_Cfam_GSD_1.0
Rhcg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640130,981,170 - 131,005,380 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648315,328,364 - 15,353,404 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648315,329,147 - 15,353,301 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RHCG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1298,015,391 - 8,040,811 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl298,015,620 - 8,040,486 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605938,774,862 - 38,799,656 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rhcg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476816,623,599 - 16,644,189 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476816,623,667 - 16,644,149 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RHCG
459 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
1 8 1 1 7 4 8 3 2 2

Sequence


Ensembl Acc Id: ENSSSCT00000002063   ⟹   ENSSSCP00000002014
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl755,046,245 - 55,071,475 (-)Ensembl
RefSeq Acc Id: NM_001044577   ⟹   NP_001038042
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1755,046,244 - 55,071,478 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021098368   ⟹   XP_020954027
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1755,046,244 - 55,071,504 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021098369   ⟹   XP_020954028
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1755,046,244 - 55,071,504 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020954027   ⟸   XM_021098368
- Peptide Label: isoform X1
- UniProtKB: A0A4X1U0V5 (UniProtKB/TrEMBL),   F1SK21 (UniProtKB/TrEMBL),   A0A8D0W4L5 (UniProtKB/TrEMBL),   A0A8D1LZQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954028   ⟸   XM_021098369
- Peptide Label: isoform X1
- UniProtKB: A0A4X1U0V5 (UniProtKB/TrEMBL),   F1SK21 (UniProtKB/TrEMBL),   A0A8D0W4L5 (UniProtKB/TrEMBL),   A0A8D1LZQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001038042   ⟸   NM_001044577
- UniProtKB: Q19KI0 (UniProtKB/Swiss-Prot),   A0A8D0W4L5 (UniProtKB/TrEMBL),   A0A8D1LZQ7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000002014   ⟸   ENSSSCT00000002063
Protein Domains
Ammonium transporter AmtB-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001841 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015025442 UniProtKB/TrEMBL
  ENSSSCG00025076170 UniProtKB/TrEMBL
  ENSSSCG00030024523 UniProtKB/TrEMBL
  ENSSSCG00035080558 UniProtKB/TrEMBL
  ENSSSCG00040072808 UniProtKB/TrEMBL
  ENSSSCG00045027142 UniProtKB/TrEMBL
  ENSSSCG00050029147 UniProtKB/TrEMBL
  ENSSSCG00055006684 UniProtKB/TrEMBL
  ENSSSCG00060073998 UniProtKB/TrEMBL
  ENSSSCG00070013794 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002063 ENTREZGENE
  ENSSSCT00000002063.5 UniProtKB/TrEMBL
  ENSSSCT00015033955.1 UniProtKB/TrEMBL
  ENSSSCT00025105401.1 UniProtKB/TrEMBL
  ENSSSCT00030034201.1 UniProtKB/TrEMBL
  ENSSSCT00035110463.1 UniProtKB/TrEMBL
  ENSSSCT00040100367.1 UniProtKB/TrEMBL
  ENSSSCT00045046399.1 UniProtKB/TrEMBL
  ENSSSCT00050039183.1 UniProtKB/TrEMBL
  ENSSSCT00055012968.1 UniProtKB/TrEMBL
  ENSSSCT00060101366.1 UniProtKB/TrEMBL
  ENSSSCT00070026937.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3430.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ammonium/urea_transptr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NH4_transpt_AmtB-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhesusRHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:733644 UniProtKB/Swiss-Prot
NCBI Gene RHCG ENTREZGENE
PANTHER AMMONIUM TRANSPORTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMMONIUM TRANSPORTER RH TYPE C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ammonium_transp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS RHESUSRHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Ammonium transporter UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1U0V5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0W4L5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1LZQ7 ENTREZGENE, UniProtKB/TrEMBL
  F1SK21 ENTREZGENE, UniProtKB/TrEMBL
  Q19KI0 ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID VGNC:109430 ENTREZGENE