POMGNT2 (protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)) - Rat Genome Database

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Gene: POMGNT2 (protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)) Sus scrofa
Analyze
Symbol: POMGNT2
Name: protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
RGD ID: 14198564
Description: ENCODES a protein that exhibits acetylglucosaminyltransferase activity (inferred); glycosyltransferase activity (inferred); protein O-acetylglucosaminyltransferase activity (inferred); INVOLVED IN neuron migration (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog); exotropia (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,523,983 - 26,526,133 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,503,610 - 26,526,185 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21329,115,735 - 29,138,369 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
POMGNT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,523,983 - 26,526,133 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,503,610 - 26,526,185 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21329,115,735 - 29,138,369 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POMGNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38343,079,234 - 43,106,079 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl343,079,229 - 43,106,085 (-)EnsemblGRCh38hg38GRCh38
GRCh37343,120,726 - 43,147,571 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36343,095,730 - 43,122,569 (-)NCBINCBI36Build 36hg18NCBI36
Celera343,058,234 - 43,085,072 (-)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef343,163,548 - 43,190,404 (-)NCBIHuRef
CHM1_1343,070,709 - 43,097,578 (-)NCBICHM1_1
T2T-CHM13v2.0343,094,564 - 43,121,424 (-)NCBIT2T-CHM13v2.0
Pomgnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,810,675 - 121,825,116 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9121,810,672 - 121,826,176 (-)EnsemblGRCm39 Ensembl
GRCm389121,981,606 - 121,996,053 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,981,606 - 121,997,110 (-)EnsemblGRCm38mm10GRCm38
MGSCv379121,890,724 - 121,905,144 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369121,830,307 - 121,844,673 (-)NCBIMGSCv36mm8
Celera9122,456,506 - 122,458,726 (-)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.78NCBI
Pomgnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88130,522,607 - 130,538,273 (-)NCBIGRCr8
mRatBN7.28121,645,106 - 121,660,761 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8121,644,970 - 121,660,757 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8127,240,355 - 127,242,097 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08125,439,426 - 125,441,168 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08123,266,289 - 123,268,031 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08130,615,482 - 130,631,144 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,615,711 - 130,617,833 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08129,791,153 - 129,792,895 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48126,952,294 - 126,954,036 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18126,972,030 - 126,973,773 (+)NCBI
Celera8120,769,878 - 120,771,620 (-)NCBICelera
Cytogenetic Map8q32NCBI
Pomgnt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542027,884,303 - 27,899,293 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542027,884,262 - 27,899,293 (+)NCBIChiLan1.0ChiLan1.0
POMGNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2243,030,544 - 43,054,391 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1343,035,306 - 43,059,090 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0342,973,492 - 42,997,288 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1344,035,357 - 44,059,142 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl344,035,815 - 44,037,557 (-)Ensemblpanpan1.1panPan2
POMGNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12312,094,306 - 12,235,491 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2312,094,778 - 12,143,214 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2312,070,388 - 12,072,130 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02312,385,758 - 12,514,160 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2312,385,759 - 12,490,593 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12312,188,508 - 12,190,250 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02312,330,417 - 12,332,159 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02312,334,318 - 12,336,060 (-)NCBIUU_Cfam_GSD_1.0
Pomgnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118199,765,155 - 199,789,524 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366952,139,661 - 2,141,403 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366952,117,506 - 2,141,859 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POMGNT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1224,521,925 - 4,548,431 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041162,650,289 - 162,676,794 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pomgnt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473076,818,751 - 76,832,291 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473076,811,200 - 76,832,299 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in POMGNT2
715 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 5 14 12 23 3 6 1

Sequence


Ensembl Acc Id: ENSSSCT00000012363   ⟹   ENSSSCP00000012040
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1326,523,983 - 26,526,133 (+)Ensembl
RefSeq Acc Id: XM_003132141   ⟹   XP_003132189
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11326,503,610 - 26,526,185 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003132189   ⟸   XM_003132141
- UniProtKB: A0A4X1TGU2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000012040   ⟸   ENSSSCT00000012363
Protein Domains
Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011293 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00025031634 UniProtKB/TrEMBL
  ENSSSCG00030024277 UniProtKB/TrEMBL
  ENSSSCG00040070514 UniProtKB/TrEMBL
  ENSSSCG00045010106 UniProtKB/TrEMBL
  ENSSSCG00050025539 UniProtKB/TrEMBL
  ENSSSCG00055001604 UniProtKB/TrEMBL
  ENSSSCG00065027105 UniProtKB/TrEMBL
  ENSSSCG00070009339 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012363.3 UniProtKB/TrEMBL
  ENSSSCT00025043000.1 UniProtKB/TrEMBL
  ENSSSCT00025043023.1 UniProtKB/TrEMBL
  ENSSSCT00030033763.1 UniProtKB/TrEMBL
  ENSSSCT00030033767.1 UniProtKB/TrEMBL
  ENSSSCT00030033770.1 UniProtKB/TrEMBL
  ENSSSCT00040096765.1 UniProtKB/TrEMBL
  ENSSSCT00040096801.1 UniProtKB/TrEMBL
  ENSSSCT00045017096.1 UniProtKB/TrEMBL
  ENSSSCT00045017116.1 UniProtKB/TrEMBL
  ENSSSCT00045017129.1 UniProtKB/TrEMBL
  ENSSSCT00050034371.1 UniProtKB/TrEMBL
  ENSSSCT00050034374.1 UniProtKB/TrEMBL
  ENSSSCT00050034377.1 UniProtKB/TrEMBL
  ENSSSCT00055002931.1 UniProtKB/TrEMBL
  ENSSSCT00055002936.1 UniProtKB/TrEMBL
  ENSSSCT00055002941.1 UniProtKB/TrEMBL
  ENSSSCT00065036494.1 UniProtKB/TrEMBL
  ENSSSCT00065036501.1 UniProtKB/TrEMBL
  ENSSSCT00070018126.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Glyco_transf_61_cat UniProtKB/TrEMBL
  Glycosyltransferase_61 UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
KEGG Report ssc:100524525 UniProtKB/TrEMBL
NCBI Gene POMGNT2 ENTREZGENE
PANTHER PROTEIN O-LINKED-MANNOSE BETA-1,4-N-ACETYLGLUCOSAMINYLTRANSFERASE 2 UniProtKB/TrEMBL
  PTHR20961 UniProtKB/TrEMBL
Pfam DUF563 UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
UniProt A0A4X1TGU2 ENTREZGENE, UniProtKB/TrEMBL
  F1SRD5_PIG UniProtKB/TrEMBL