ACTG1 (actin gamma 1) - Rat Genome Database

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Gene: ACTG1 (actin gamma 1) Sus scrofa
Analyze
Symbol: ACTG1
Name: actin gamma 1
RGD ID: 14186594
Description: ENCODES a protein that exhibits structural constituent of postsynaptic actin cytoskeleton (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to type II interferon (ortholog); platelet aggregation (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); Animal Mammary Neoplasms (ortholog); autosomal dominant nonsyndromic deafness 20 (ortholog); FOUND IN calyx of Held (ortholog); cytoskeleton (ortholog); dense body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: actin; actin, cytoplasmic 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,313,641 - 1,323,217 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,320,355 - 1,323,219 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,163,186 - 1,166,032 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17177693   PMID:26924216  


Genomics

Comparative Map Data
ACTG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,313,641 - 1,323,217 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,320,355 - 1,323,219 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,163,186 - 1,166,032 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACTG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,509,971 - 81,512,799 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,509,413 - 81,523,847 (-)EnsemblGRCh38hg38GRCh38
GRCh371779,476,997 - 79,479,825 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,091,594 - 77,094,422 (-)NCBINCBI36Build 36hg18NCBI36
Build 341777,091,593 - 77,094,422NCBI
Cytogenetic Map17q25.3NCBI
HuRef1774,925,813 - 74,928,708 (-)NCBIHuRef
CHM1_11779,563,278 - 79,566,173 (-)NCBICHM1_1
T2T-CHM13v2.01782,427,089 - 82,429,917 (-)NCBIT2T-CHM13v2.0
Actg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,236,513 - 120,239,321 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,236,516 - 120,239,368 (-)EnsemblGRCm39 Ensembl
GRCm3811120,345,687 - 120,348,495 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,345,690 - 120,348,542 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,207,004 - 120,209,798 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,161,780 - 120,171,339 (-)NCBIMGSCv36mm8
Celera11132,080,255 - 132,083,049 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.07NCBI
Actg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,118,106 - 106,120,951 (-)NCBIGRCr8
mRatBN7.210105,619,738 - 105,622,587 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl372,977,767 - 72,979,694 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl10105,619,737 - 105,624,232 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10110,724,157 - 110,726,999 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,187,175 - 110,190,017 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,540,227 - 105,543,072 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,518,429 - 109,521,288 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl375,643,054 - 75,644,954 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,519,134 - 109,520,846 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,113,705 - 109,116,103 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410109,773,489 - 109,776,334 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110109,787,992 - 109,790,826 (-)NCBI
Celera10104,164,981 - 104,167,826 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Actg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,546,678 - 1,552,105 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,546,678 - 1,549,611 (+)NCBIChiLan1.0ChiLan1.0
ACTG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,096,764 - 98,099,674 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117102,996,909 - 102,999,820 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01775,965,911 - 75,968,822 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11781,668,221 - 81,671,087 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1781,668,221 - 81,671,087 (-)Ensemblpanpan1.1panPan2
ACTG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19635,978 - 638,328 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9635,978 - 638,328 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha91,238,649 - 1,241,000 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.091,229,608 - 1,232,436 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl91,229,663 - 1,232,434 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.191,254,519 - 1,256,870 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,380,335 - 1,382,686 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,460,286 - 1,462,637 (+)NCBIUU_Cfam_GSD_1.0
Actg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,238,788 - 1,241,248 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,170,711 - 5,173,247 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,170,711 - 5,173,251 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,456,907 - 73,459,777 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607744,839,199 - 44,842,119 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Actg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,496,718 - 10,499,637 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,496,876 - 10,499,737 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ACTG1
98 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000025260   ⟹   ENSSSCP00000028087
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl121,313,641 - 1,323,215 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000037463   ⟹   ENSSSCP00000039105
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl121,320,110 - 1,323,217 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000045547   ⟹   ENSSSCP00000040911
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl121,320,068 - 1,323,217 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000076195   ⟹   ENSSSCP00000070416
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl121,313,641 - 1,322,483 (+)Ensembl
RefSeq Acc Id: XM_003357928   ⟹   XP_003357976
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1121,320,355 - 1,323,219 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003357976 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA17872 (Get FASTA)   NCBI Sequence Viewer  
  AMN88563 (Get FASTA)   NCBI Sequence Viewer  
  CAC85408 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000028087
  ENSSSCP00000028087.1
  ENSSSCP00000039105.2
  ENSSSCP00000040911.2
  ENSSSCP00000070416.1
  ENSSSCP00015025958.1
  ENSSSCP00015026101.1
  ENSSSCP00015026571.1
  ENSSSCP00015026776.1
  ENSSSCP00015026832.1
  ENSSSCP00015027127.1
  ENSSSCP00025035580.1
  ENSSSCP00025035656.1
  ENSSSCP00025035724.1
  ENSSSCP00025035769.1
  ENSSSCP00030005298.1
  ENSSSCP00030005312.1
  ENSSSCP00030005317.1
  ENSSSCP00030005320.1
  ENSSSCP00035048503.1
  ENSSSCP00035048516.1
  ENSSSCP00035048532.1
  ENSSSCP00035048534.1
  ENSSSCP00040017907.1
  ENSSSCP00040018160.1
  ENSSSCP00040018276.1
  ENSSSCP00040018592.1
  ENSSSCP00045030501.1
  ENSSSCP00045030561.1
  ENSSSCP00045030653.1
  ENSSSCP00045030697.1
  ENSSSCP00050035276.1
  ENSSSCP00055019914.1
  ENSSSCP00055040831.1
  ENSSSCP00055040932.1
  ENSSSCP00055040981.1
  ENSSSCP00055041033.1
  ENSSSCP00060039090.1
  ENSSSCP00060039103.1
  ENSSSCP00060039110.1
  ENSSSCP00060039174.1
  ENSSSCP00060039184.1
  ENSSSCP00065035567.1
  ENSSSCP00065035595.1
  ENSSSCP00065035604.1
  ENSSSCP00065035616.1
  ENSSSCP00070026262.1
  ENSSSCP00070026263.1
  ENSSSCP00070026281.1
  ENSSSCP00070026287.1
  ENSSSCP00070026302.1
  ENSSSCP00070026311.1
  ENSSSCP00070026320.1
  ENSSSCP00070026350.1
GenBank Protein JAG69749 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_003357976   ⟸   XM_003357928
- UniProtKB: A0A4X1UBI4 (UniProtKB/TrEMBL),   A0A0B8RTA2 (UniProtKB/TrEMBL),   A0A4X1UDU9 (UniProtKB/TrEMBL),   A0A4X1UEC7 (UniProtKB/TrEMBL),   A0A8D0UWY1 (UniProtKB/TrEMBL),   I3LVD5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000028087   ⟸   ENSSSCT00000025260
Ensembl Acc Id: ENSSSCP00000040911   ⟸   ENSSSCT00000045547
Ensembl Acc Id: ENSSSCP00000070416   ⟸   ENSSSCT00000076195
Ensembl Acc Id: ENSSSCP00000039105   ⟸   ENSSSCT00000037463


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028355 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015048797 UniProtKB/TrEMBL
  ENSSSCG00025059895 UniProtKB/TrEMBL
  ENSSSCG00030008658 UniProtKB/TrEMBL
  ENSSSCG00035080865 UniProtKB/TrEMBL
  ENSSSCG00040031796 UniProtKB/TrEMBL
  ENSSSCG00045025762 UniProtKB/TrEMBL
  ENSSSCG00050060280 UniProtKB/TrEMBL
  ENSSSCG00055012597 UniProtKB/TrEMBL
  ENSSSCG00055025775 UniProtKB/TrEMBL
  ENSSSCG00060065663 UniProtKB/TrEMBL
  ENSSSCG00065059637 UniProtKB/TrEMBL
  ENSSSCG00070016004 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000025260 ENTREZGENE
  ENSSSCT00000025260.3 UniProtKB/TrEMBL
  ENSSSCT00000037463.3 UniProtKB/TrEMBL
  ENSSSCT00000045547.3 UniProtKB/TrEMBL
  ENSSSCT00000076195.2 UniProtKB/TrEMBL
  ENSSSCT00015064889.1 UniProtKB/TrEMBL
  ENSSSCT00015065219.1 UniProtKB/TrEMBL
  ENSSSCT00015066330.1 UniProtKB/TrEMBL
  ENSSSCT00015066769.1 UniProtKB/TrEMBL
  ENSSSCT00015066895.1 UniProtKB/TrEMBL
  ENSSSCT00015067720.1 UniProtKB/TrEMBL
  ENSSSCT00025081984.1 UniProtKB/TrEMBL
  ENSSSCT00025082154.1 UniProtKB/TrEMBL
  ENSSSCT00025082301.1 UniProtKB/TrEMBL
  ENSSSCT00025082408.1 UniProtKB/TrEMBL
  ENSSSCT00030011810.1 UniProtKB/TrEMBL
  ENSSSCT00030011834.1 UniProtKB/TrEMBL
  ENSSSCT00030011847.1 UniProtKB/TrEMBL
  ENSSSCT00030011854.1 UniProtKB/TrEMBL
  ENSSSCT00035110978.1 UniProtKB/TrEMBL
  ENSSSCT00035110990.1 UniProtKB/TrEMBL
  ENSSSCT00035111012.1 UniProtKB/TrEMBL
  ENSSSCT00035111014.1 UniProtKB/TrEMBL
  ENSSSCT00040042733.1 UniProtKB/TrEMBL
  ENSSSCT00040043266.1 UniProtKB/TrEMBL
  ENSSSCT00040043535.1 UniProtKB/TrEMBL
  ENSSSCT00040044238.1 UniProtKB/TrEMBL
  ENSSSCT00045043930.1 UniProtKB/TrEMBL
  ENSSSCT00045044035.1 UniProtKB/TrEMBL
  ENSSSCT00045044184.1 UniProtKB/TrEMBL
  ENSSSCT00045044257.1 UniProtKB/TrEMBL
  ENSSSCT00050082148.1 UniProtKB/TrEMBL
  ENSSSCT00055025073.1 UniProtKB/TrEMBL
  ENSSSCT00055051072.1 UniProtKB/TrEMBL
  ENSSSCT00055051196.1 UniProtKB/TrEMBL
  ENSSSCT00055051259.1 UniProtKB/TrEMBL
  ENSSSCT00055051325.1 UniProtKB/TrEMBL
  ENSSSCT00060090310.1 UniProtKB/TrEMBL
  ENSSSCT00060090348.1 UniProtKB/TrEMBL
  ENSSSCT00060090376.1 UniProtKB/TrEMBL
  ENSSSCT00060090521.1 UniProtKB/TrEMBL
  ENSSSCT00060090543.1 UniProtKB/TrEMBL
  ENSSSCT00065081666.1 UniProtKB/TrEMBL
  ENSSSCT00065081728.1 UniProtKB/TrEMBL
  ENSSSCT00065081754.1 UniProtKB/TrEMBL
  ENSSSCT00065081782.1 UniProtKB/TrEMBL
  ENSSSCT00070031506.1 UniProtKB/TrEMBL
  ENSSSCT00070031508.1 UniProtKB/TrEMBL
  ENSSSCT00070031532.1 UniProtKB/TrEMBL
  ENSSSCT00070031537.1 UniProtKB/TrEMBL
  ENSSSCT00070031555.1 UniProtKB/TrEMBL
  ENSSSCT00070031565.1 UniProtKB/TrEMBL
  ENSSSCT00070031576.1 UniProtKB/TrEMBL
  ENSSSCT00070031609.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.40 UniProtKB/TrEMBL
  Actin, Chain A, domain 2 UniProtKB/TrEMBL
  Actin, Chain A, domain 4 UniProtKB/TrEMBL
InterPro Actin UniProtKB/TrEMBL
  Actin/actin-like_CS UniProtKB/TrEMBL
  Actin_CS UniProtKB/TrEMBL
  ATPase_NBD UniProtKB/TrEMBL
KEGG Report ssc:397653 UniProtKB/TrEMBL
NCBI Gene ACTG1 ENTREZGENE
PANTHER PTHR11937 UniProtKB/TrEMBL
Pfam Actin UniProtKB/TrEMBL
PRINTS ACTIN UniProtKB/TrEMBL
PROSITE ACTINS_1 UniProtKB/TrEMBL
  ACTINS_2 UniProtKB/TrEMBL
  ACTINS_ACT_LIKE UniProtKB/TrEMBL
SMART ACTIN UniProtKB/TrEMBL
Superfamily-SCOP SSF53067 UniProtKB/TrEMBL
UniProt A0A0B8RTA2 ENTREZGENE
  A0A287A5G1_PIG UniProtKB/TrEMBL
  A0A287AA77_PIG UniProtKB/TrEMBL
  A0A4X1U972_PIG UniProtKB/TrEMBL
  A0A4X1UBG9_PIG UniProtKB/TrEMBL
  A0A4X1UBI4 ENTREZGENE
  A0A4X1UD76_PIG UniProtKB/TrEMBL
  A0A4X1UDA5_PIG UniProtKB/TrEMBL
  A0A4X1UDU9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UEC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NYW7_PIG UniProtKB/TrEMBL
  A0A8D0U5E3_PIG UniProtKB/TrEMBL
  A0A8D0UWY1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VF82_PIG UniProtKB/TrEMBL
  A0A8D1S1H5_PIG UniProtKB/TrEMBL
  A0A8D1UB95_PIG UniProtKB/TrEMBL
  A0A8D1WFW5_PIG UniProtKB/TrEMBL
  I3LVD5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1UBI4 UniProtKB/TrEMBL
  A0A5G2QZX1 UniProtKB/TrEMBL
VGNC ID VGNC:109659 ENTREZGENE