VPS13A (vacuolar protein sorting 13 homolog A) - Rat Genome Database

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Gene: VPS13A (vacuolar protein sorting 13 homolog A) Sus scrofa
Analyze
Symbol: VPS13A
Name: vacuolar protein sorting 13 homolog A
RGD ID: 14179146
Description: INVOLVED IN adult locomotory behavior (ortholog); autophagy (ortholog); brain-derived neurotrophic factor receptor signaling pathway (ortholog); ASSOCIATED WITH choreaacanthocytosis (ortholog); choreatic disease (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); mitochondrion (ortholog); neuron projection (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vacuolar protein sorting-associated protein 13A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1230,069,368 - 230,331,200 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11230,069,339 - 230,331,343 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21256,783,098 - 256,879,557 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
VPS13A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1230,069,368 - 230,331,200 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11230,069,339 - 230,331,343 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21256,783,098 - 256,879,557 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VPS13A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38977,177,534 - 77,421,537 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl977,177,445 - 77,421,537 (+)EnsemblGRCh38hg38GRCh38
GRCh37979,792,450 - 80,036,453 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36978,982,181 - 79,222,219 (+)NCBINCBI36Build 36hg18NCBI36
Celera950,369,484 - 50,609,533 (+)NCBICelera
Cytogenetic Map9q21.2NCBI
HuRef949,623,817 - 49,863,840 (+)NCBIHuRef
CHM1_1979,938,844 - 80,179,199 (+)NCBICHM1_1
T2T-CHM13v2.0989,334,100 - 89,578,104 (+)NCBIT2T-CHM13v2.0
Vps13a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391916,592,730 - 16,758,433 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1916,592,730 - 16,758,297 (-)EnsemblGRCm39 Ensembl
GRCm381916,615,366 - 16,781,071 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1916,615,366 - 16,780,933 (-)EnsemblGRCm38mm10GRCm38
MGSCv371916,691,164 - 16,855,417 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361916,683,693 - 16,847,946 (-)NCBIMGSCv36mm8
Celera1917,275,535 - 17,440,000 (-)NCBICelera
Cytogenetic Map19A- BNCBI
cM Map1911.71NCBI
Vps13a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81223,328,784 - 223,555,500 (-)NCBIGRCr8
mRatBN7.21213,901,999 - 214,128,638 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1213,901,999 - 214,128,555 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1222,230,525 - 222,462,915 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01229,165,841 - 229,392,426 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01221,985,083 - 222,217,463 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01235,352,513 - 235,813,597 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1235,653,121 - 235,813,030 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01242,670,357 - 243,128,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41219,987,826 - 220,221,494 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11220,153,337 - 220,385,366 (-)NCBI
Celera1211,235,485 - 211,455,239 (-)NCBICelera
Cytogenetic Map1q43NCBI
Vps13a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555122,039,115 - 2,267,099 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555122,037,803 - 2,267,197 (-)NCBIChiLan1.0ChiLan1.0
VPS13A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21176,337,834 - 76,581,678 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1976,343,550 - 76,587,617 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0947,424,921 - 47,668,150 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1976,032,292 - 76,275,155 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl976,032,286 - 76,269,636 (+)Ensemblpanpan1.1panPan2
VPS13A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1181,191,125 - 81,426,337 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl181,192,349 - 81,426,322 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha181,654,790 - 81,889,759 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0181,603,680 - 81,839,234 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl181,604,885 - 81,839,239 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1181,389,076 - 81,624,112 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0181,110,788 - 81,346,344 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0181,839,940 - 82,075,231 (-)NCBIUU_Cfam_GSD_1.0
Vps13a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947128,315,230 - 128,566,983 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650312,606,014 - 12,858,005 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650312,606,019 - 12,857,807 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS13A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11288,140,842 - 88,380,966 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1288,167,258 - 88,379,614 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603876,526,493 - 76,716,430 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vps13a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248114,640,090 - 4,901,510 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248114,639,926 - 4,902,749 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in VPS13A
5087 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000005817   ⟹   ENSSSCP00000005673
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1230,069,547 - 230,327,852 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000067516   ⟹   ENSSSCP00000060805
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1230,069,368 - 230,305,430 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000068729   ⟹   ENSSSCP00000071880
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1230,069,368 - 230,331,200 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000078542   ⟹   ENSSSCP00000067642
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1230,069,368 - 230,331,200 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000106155   ⟹   ENSSSCP00000079383
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1230,069,547 - 230,305,261 (+)Ensembl
RefSeq Acc Id: XM_021065108   ⟹   XP_020920767
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11230,069,339 - 230,331,343 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020920767   ⟸   XM_021065108
- UniProtKB: A0A480QT21 (UniProtKB/TrEMBL),   A0A4X1W2A3 (UniProtKB/TrEMBL),   A0A5G2QS63 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000067642   ⟸   ENSSSCT00000078542
Ensembl Acc Id: ENSSSCP00000005673   ⟸   ENSSSCT00000005817
Ensembl Acc Id: ENSSSCP00000071880   ⟸   ENSSSCT00000068729
Ensembl Acc Id: ENSSSCP00000060805   ⟸   ENSSSCT00000067516
Ensembl Acc Id: ENSSSCP00000079383   ⟸   ENSSSCT00000106155

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005282 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015034943 UniProtKB/TrEMBL
  ENSSSCG00025024336 UniProtKB/TrEMBL
  ENSSSCG00030074076 UniProtKB/TrEMBL
  ENSSSCG00035074429 UniProtKB/TrEMBL
  ENSSSCG00040030906 UniProtKB/TrEMBL
  ENSSSCG00045015383 UniProtKB/TrEMBL
  ENSSSCG00055024795 UniProtKB/TrEMBL
  ENSSSCG00060052571 UniProtKB/TrEMBL
  ENSSSCG00070028210 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005817.5 UniProtKB/TrEMBL
  ENSSSCT00000067516.2 UniProtKB/TrEMBL
  ENSSSCT00000068729.2 UniProtKB/TrEMBL
  ENSSSCT00000078542 ENTREZGENE
  ENSSSCT00000078542.2 UniProtKB/TrEMBL
  ENSSSCT00000106155.1 UniProtKB/TrEMBL
  ENSSSCT00015046755.1 UniProtKB/TrEMBL
  ENSSSCT00015046990.1 UniProtKB/TrEMBL
  ENSSSCT00015047270.1 UniProtKB/TrEMBL
  ENSSSCT00015047719.1 UniProtKB/TrEMBL
  ENSSSCT00025033084.1 UniProtKB/TrEMBL
  ENSSSCT00025035055.1 UniProtKB/TrEMBL
  ENSSSCT00025036935.1 UniProtKB/TrEMBL
  ENSSSCT00025039050.1 UniProtKB/TrEMBL
  ENSSSCT00030103870.1 UniProtKB/TrEMBL
  ENSSSCT00030103890.1 UniProtKB/TrEMBL
  ENSSSCT00030103911.1 UniProtKB/TrEMBL
  ENSSSCT00035101059.1 UniProtKB/TrEMBL
  ENSSSCT00040041665.1 UniProtKB/TrEMBL
  ENSSSCT00040042043.1 UniProtKB/TrEMBL
  ENSSSCT00040042364.1 UniProtKB/TrEMBL
  ENSSSCT00040042499.1 UniProtKB/TrEMBL
  ENSSSCT00040042741.1 UniProtKB/TrEMBL
  ENSSSCT00040042899.1 UniProtKB/TrEMBL
  ENSSSCT00045026149.1 UniProtKB/TrEMBL
  ENSSSCT00045026418.1 UniProtKB/TrEMBL
  ENSSSCT00045026842.1 UniProtKB/TrEMBL
  ENSSSCT00045027241.1 UniProtKB/TrEMBL
  ENSSSCT00055048947.1 UniProtKB/TrEMBL
  ENSSSCT00055049459.1 UniProtKB/TrEMBL
  ENSSSCT00055050164.1 UniProtKB/TrEMBL
  ENSSSCT00055050520.1 UniProtKB/TrEMBL
  ENSSSCT00055050825.1 UniProtKB/TrEMBL
  ENSSSCT00060071588.1 UniProtKB/TrEMBL
  ENSSSCT00060071615.1 UniProtKB/TrEMBL
  ENSSSCT00070056593.1 UniProtKB/TrEMBL
  ENSSSCT00070056611.1 UniProtKB/TrEMBL
  ENSSSCT00070056676.1 UniProtKB/TrEMBL
InterPro Autophagy-rel_C UniProtKB/TrEMBL
  SHR-BD UniProtKB/TrEMBL
  VPS13 UniProtKB/TrEMBL
  VPS13_C UniProtKB/TrEMBL
  VPS13_C UniProtKB/TrEMBL
  VPS13_mid_rpt UniProtKB/TrEMBL
  VPS13_N UniProtKB/TrEMBL
  VPS13_N2 UniProtKB/TrEMBL
NCBI Gene VPS13A ENTREZGENE
PANTHER PTHR16166 UniProtKB/TrEMBL
  VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13A UniProtKB/TrEMBL
Pfam ATG_C UniProtKB/TrEMBL
  Chorein_N UniProtKB/TrEMBL
  SHR-BD UniProtKB/TrEMBL
  VPS13 UniProtKB/TrEMBL
  VPS13_C UniProtKB/TrEMBL
  VPS13_C UniProtKB/TrEMBL
  VPS13_mid_rpt UniProtKB/TrEMBL
UniProt A0A480QT21 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W2A3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W2B7_PIG UniProtKB/TrEMBL
  A0A4X1W3N5_PIG UniProtKB/TrEMBL
  A0A5G2QRA3_PIG UniProtKB/TrEMBL
  A0A5G2QS63 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R6A9_PIG UniProtKB/TrEMBL
  A0A8D0K7I0_PIG UniProtKB/TrEMBL
  A0A8D0LUA3_PIG UniProtKB/TrEMBL
  A0A8D0NGM5_PIG UniProtKB/TrEMBL
  A0A8D0NGU5_PIG UniProtKB/TrEMBL
  A0A8D0NGW9_PIG UniProtKB/TrEMBL
  A0A8D0NNF6_PIG UniProtKB/TrEMBL
  A0A8D0Y9R0_PIG UniProtKB/TrEMBL
  A0A8D1E5I7_PIG UniProtKB/TrEMBL
  A0A8D1EAN3_PIG UniProtKB/TrEMBL
  A0A8D1HEJ5_PIG UniProtKB/TrEMBL
  A0A8D1HEZ1_PIG UniProtKB/TrEMBL
  A0A8D1HKB4_PIG UniProtKB/TrEMBL
  A0A8D1K8S5_PIG UniProtKB/TrEMBL
  A0A8D1K8V6_PIG UniProtKB/TrEMBL
  A0A8D1KWR6_PIG UniProtKB/TrEMBL
  A0A8D1RP32_PIG UniProtKB/TrEMBL
  A0A8D1RSQ5_PIG UniProtKB/TrEMBL
  A0A8D1S0L1_PIG UniProtKB/TrEMBL
  A0A8W4FJ81_PIG UniProtKB/TrEMBL
  F1SIL5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94838 ENTREZGENE