ATP4B (ATPase H+/K+ transporting subunit beta) - Rat Genome Database

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Gene: ATP4B (ATPase H+/K+ transporting subunit beta) Sus scrofa
Analyze
Symbol: ATP4B
Name: ATPase H+/K+ transporting subunit beta
RGD ID: 14142011
Description: ENCODES a protein that exhibits heterocyclic compound binding (ortholog); INVOLVED IN potassium ion transmembrane transport; pH reduction (ortholog); response to lipopolysaccharide (ortholog); PARTICIPATES IN cimetidine pharmacodynamics pathway; esomeprazole pharmacodynamics pathway; esomeprazole pharmacokinetics pathway; ASSOCIATED WITH atrophic gastritis (ortholog); autoimmune gastritis (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN potassium:proton exchanging ATPase complex; INTERACTS WITH ebselen
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATPase H+/K+ transporting beta subunit; gastric H(+)/K(+) ATPase subunit beta; gastric H+/K+-ATPase beta subunit; gp60-90; potassium-transporting ATPase subunit beta; proton pump beta chain
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1178,780,013 - 78,785,116 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11178,780,013 - 78,785,143 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21186,513,302 - 86,518,449 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
ebselen  (EXP)

References
Additional References at PubMed
PMID:1974721   PMID:2159787   PMID:22301074   PMID:23091039   PMID:25231997   PMID:29618813   PMID:30032202  


Genomics

Comparative Map Data
ATP4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1178,780,013 - 78,785,116 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11178,780,013 - 78,785,143 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21186,513,302 - 86,518,449 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813113,648,804 - 113,658,198 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13113,648,804 - 113,658,198 (-)EnsemblGRCh38hg38GRCh38
GRCh3713114,303,119 - 114,312,513 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613113,351,120 - 113,360,502 (-)NCBINCBI36Build 36hg18NCBI36
Build 3413113,351,122 - 113,360,502NCBI
Celera1395,130,374 - 95,139,808 (-)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1394,742,367 - 94,751,761 (-)NCBIHuRef
CHM1_113114,272,447 - 114,281,841 (-)NCBICHM1_1
T2T-CHM13v2.013112,907,872 - 112,917,266 (-)NCBIT2T-CHM13v2.0
Atp4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39813,436,209 - 13,446,778 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl813,436,205 - 13,446,825 (-)EnsemblGRCm39 Ensembl
GRCm38813,386,209 - 13,396,778 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl813,386,205 - 13,396,825 (-)EnsemblGRCm38mm10GRCm38
MGSCv37813,386,209 - 13,396,778 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36813,386,186 - 13,396,755 (-)NCBIMGSCv36mm8
Celera813,554,643 - 13,565,216 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.89NCBI
Atp4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81682,846,329 - 82,855,242 (+)NCBIGRCr8
mRatBN7.21676,144,150 - 76,153,063 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1676,144,150 - 76,153,063 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1681,424,745 - 81,433,658 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01684,877,703 - 84,886,616 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01680,126,502 - 80,135,394 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01681,136,218 - 81,145,131 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1681,136,218 - 81,145,131 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01680,624,778 - 80,633,691 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41681,000,154 - 81,009,067 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11681,000,418 - 81,009,332 (+)NCBI
Celera1673,951,353 - 73,960,266 (+)NCBICelera
RH 3.4 Map16743.6RGD
Cytogenetic Map16q12.5NCBI
Atp4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955404362,368 - 372,077 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955404362,410 - 372,077 (+)NCBIChiLan1.0ChiLan1.0
ATP4B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214115,160,113 - 115,170,521 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113113,851,442 - 113,861,871 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01394,796,689 - 94,807,210 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113113,848,121 - 113,859,054 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13113,848,126 - 113,859,054 (-)Ensemblpanpan1.1panPan2
ATP4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12260,898,801 - 60,904,223 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2260,898,833 - 60,904,223 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2260,609,212 - 60,615,183 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02261,582,729 - 61,588,695 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2261,583,223 - 61,588,608 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12261,021,472 - 61,027,443 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02261,023,514 - 61,029,484 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02261,054,593 - 61,060,564 (-)NCBIUU_Cfam_GSD_1.0
Atp4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945195,778,134 - 195,783,608 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936472168,750 - 173,968 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936472168,745 - 173,996 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1391,618,147 - 91,629,177 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl391,618,957 - 91,627,679 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604648,705,491 - 48,714,926 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624793472,241 - 479,753 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624793472,241 - 479,753 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP4B
104 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
mesenchyme
mesoderm
2 2 2 2

Sequence


Ensembl Acc Id: ENSSSCT00000010481   ⟹   ENSSSCP00000010209
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1178,780,013 - 78,785,116 (-)Ensembl
RefSeq Acc Id: NM_001001258   ⟹   NP_001001258
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11178,780,013 - 78,785,116 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005653839   ⟹   XP_005653896
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11178,780,242 - 78,785,137 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021065156   ⟹   XP_020920815
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11178,780,410 - 78,785,143 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001001258   ⟸   NM_001001258
- UniProtKB: P18434 (UniProtKB/Swiss-Prot),   A0A4X1U1Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005653896   ⟸   XM_005653839
- Peptide Label: isoform X1
- UniProtKB: P18434 (UniProtKB/Swiss-Prot),   A0A4X1U1Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920815   ⟸   XM_021065156
- Peptide Label: isoform X2
- UniProtKB: A0A4X1U1Z8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000010209   ⟸   ENSSSCT00000010481


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009561 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00015004859 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025027365 UniProtKB/Swiss-Prot
  ENSSSCG00030008180 UniProtKB/Swiss-Prot
  ENSSSCG00035032852 UniProtKB/Swiss-Prot
  ENSSSCG00040019363 UniProtKB/Swiss-Prot
  ENSSSCG00045034353 UniProtKB/Swiss-Prot
  ENSSSCG00050037103 UniProtKB/Swiss-Prot
  ENSSSCG00055029233 UniProtKB/Swiss-Prot
  ENSSSCG00060039283 UniProtKB/Swiss-Prot
  ENSSSCG00065078438 UniProtKB/Swiss-Prot
  ENSSSCG00070013475 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010481 ENTREZGENE
  ENSSSCT00000010481.4 UniProtKB/Swiss-Prot
  ENSSSCT00015006532.1 UniProtKB/Swiss-Prot
  ENSSSCT00015006546.1 UniProtKB/TrEMBL
  ENSSSCT00025037061.1 UniProtKB/Swiss-Prot
  ENSSSCT00030011096.1 UniProtKB/Swiss-Prot
  ENSSSCT00035043522.1 UniProtKB/Swiss-Prot
  ENSSSCT00040026224.1 UniProtKB/Swiss-Prot
  ENSSSCT00045058795.1 UniProtKB/Swiss-Prot
  ENSSSCT00045058834.1 UniProtKB/Swiss-Prot
  ENSSSCT00050049928.1 UniProtKB/Swiss-Prot
  ENSSSCT00050049935.1 UniProtKB/Swiss-Prot
  ENSSSCT00055058033.1 UniProtKB/Swiss-Prot
  ENSSSCT00055058052.1 UniProtKB/Swiss-Prot
  ENSSSCT00060053134.1 UniProtKB/Swiss-Prot
  ENSSSCT00060053141.1 UniProtKB/Swiss-Prot
  ENSSSCT00065108712.1 UniProtKB/Swiss-Prot
  ENSSSCT00065108726.1 UniProtKB/Swiss-Prot
  ENSSSCT00070026294.1 UniProtKB/Swiss-Prot
  ENSSSCT00070026304.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.1660 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Na/K_ATPase_sub_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na/K_ATPase_sub_beta_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397131 UniProtKB/Swiss-Prot
NCBI Gene ATP4B ENTREZGENE
PANTHER POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11523 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Na_K-ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ATPASE_NA_K_BETA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPASE_NA_K_BETA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1U1Z8 ENTREZGENE, UniProtKB/TrEMBL
  ATP4B_PIG UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:85655 ENTREZGENE