CCT6A (chaperonin containing TCP1 subunit 6A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: CCT6A (chaperonin containing TCP1 subunit 6A) Sus scrofa
Analyze
Symbol: CCT6A
Name: chaperonin containing TCP1 subunit 6A
RGD ID: 14125201
Description: ENCODES a protein that exhibits protein folding chaperone (ortholog); WD40-repeat domain binding (ortholog); INVOLVED IN binding of sperm to zona pellucida (ortholog); chaperone-mediated protein folding (ortholog); positive regulation of establishment of protein localization to telomere (ortholog); ASSOCIATED WITH autistic disorder (ortholog); pleomorphic xanthoastrocytoma (ortholog); PSPH deficiency (ortholog); FOUND IN acrosomal vesicle (ortholog); cell body (ortholog); cytosol (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chaperonin containing TCP1, subunit 6A (zeta 1); T-complex protein 1 subunit zeta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,843,804 - 16,858,819 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,843,801 - 16,858,819 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,180,645 - 17,194,658 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:15679890   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CCT6A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,843,804 - 16,858,819 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,843,801 - 16,858,819 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,180,645 - 17,194,658 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCT6A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38756,051,765 - 56,063,989 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl756,051,685 - 56,063,989 (+)EnsemblGRCh38hg38GRCh38
GRCh37756,119,458 - 56,131,682 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36756,086,872 - 56,099,176 (+)NCBINCBI36Build 36hg18NCBI36
Build 34755,893,586 - 55,905,891NCBI
Celera767,172,779 - 67,185,081 (+)NCBICelera
Cytogenetic Map7p11.2NCBI
HuRef755,933,178 - 55,945,465 (+)NCBIHuRef
CHM1_1756,122,415 - 56,134,705 (+)NCBICHM1_1
T2T-CHM13v2.0756,211,599 - 56,223,813 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2756,123,625 - 56,135,929 (+)NCBI
Cct6a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,864,420 - 129,875,284 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5129,864,062 - 129,875,212 (+)EnsemblGRCm39 Ensembl
GRCm385129,787,356 - 129,846,443 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,786,998 - 129,846,371 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,293,261 - 130,300,376 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv375130,320,838 - 130,322,231 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,102,094 - 130,109,209 (+)NCBIMGSCv36mm8
Celera5126,831,958 - 126,842,310 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.26NCBI
Cct6a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,508,842 - 32,519,072 (-)NCBIGRCr8
mRatBN7.21226,872,736 - 26,883,125 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,872,574 - 26,883,337 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1228,009,963 - 28,019,744 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,620,502 - 28,630,283 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,681,988 - 27,691,769 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,491,584 - 30,501,813 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,491,416 - 30,501,860 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,433,505 - 32,443,734 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,992,348 - 28,002,578 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11227,855,700 - 27,866,156 (+)NCBI
Celera1228,578,429 - 28,588,659 (-)NCBICelera
Cytogenetic Map12q13NCBI
Cct6a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,223,774 - 8,237,966 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554568,223,785 - 8,236,760 (+)NCBIChiLan1.0ChiLan1.0
CCT6A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2660,903,879 - 60,915,550 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17109,228,731 - 109,240,863 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0756,664,757 - 56,677,000 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1757,087,935 - 57,099,519 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl757,087,072 - 57,098,613 (+)Ensemblpanpan1.1panPan2
CCT6A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.16546,278 - 556,996 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl6546,307 - 557,001 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha62,245,558 - 2,256,308 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.06349,896 - 360,647 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl6349,907 - 361,209 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.16293,657 - 304,407 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06287,738 - 298,489 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.06458,965 - 469,718 (+)NCBIUU_Cfam_GSD_1.0
Cct6a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,136,398 - 126,149,056 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365437,887,414 - 7,900,200 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365437,887,511 - 7,900,174 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCT6A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1212,715,990 - 2,728,397 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl212,718,975 - 2,728,239 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041179,918,592 - 179,930,935 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cct6a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,247,469 - 8,258,978 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247408,247,477 - 8,258,335 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCT6A
475 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000031361   ⟹   ENSSSCP00000020707
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl316,843,804 - 16,858,819 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000078540   ⟹   ENSSSCP00000064329
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl316,843,625 - 16,858,817 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000087147   ⟹   ENSSSCP00000072651
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl316,843,804 - 16,858,819 (-)Ensembl
RefSeq Acc Id: XM_005662018   ⟹   XP_005662075
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1316,843,801 - 16,858,819 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005662075   ⟸   XM_005662018
- UniProtKB: I3L9J4 (UniProtKB/TrEMBL),   A0A8D1DI00 (UniProtKB/TrEMBL),   A0A8D0UQ08 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000020707   ⟸   ENSSSCT00000031361
Ensembl Acc Id: ENSSSCP00000064329   ⟸   ENSSSCT00000078540
Ensembl Acc Id: ENSSSCP00000072651   ⟸   ENSSSCT00000087147


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000020808 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015051026 UniProtKB/TrEMBL
  ENSSSCG00025036235 UniProtKB/TrEMBL
  ENSSSCG00030062494 UniProtKB/TrEMBL
  ENSSSCG00035043290 UniProtKB/TrEMBL
  ENSSSCG00040012866 UniProtKB/TrEMBL
  ENSSSCG00045031660 UniProtKB/TrEMBL
  ENSSSCG00055028562 UniProtKB/TrEMBL
  ENSSSCG00060030760 UniProtKB/TrEMBL
  ENSSSCG00065068582 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000031361 ENTREZGENE
  ENSSSCT00000031361.3 UniProtKB/TrEMBL
  ENSSSCT00000087147.1 UniProtKB/TrEMBL
  ENSSSCT00015067944.1 UniProtKB/TrEMBL
  ENSSSCT00025049391.1 UniProtKB/TrEMBL
  ENSSSCT00030087425.1 UniProtKB/TrEMBL
  ENSSSCT00035057514.1 UniProtKB/TrEMBL
  ENSSSCT00040017054.1 UniProtKB/TrEMBL
  ENSSSCT00045054176.1 UniProtKB/TrEMBL
  ENSSSCT00055056652.1 UniProtKB/TrEMBL
  ENSSSCT00060041566.1 UniProtKB/TrEMBL
  ENSSSCT00065094150.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.560.10 UniProtKB/TrEMBL
  3.30.260.10 UniProtKB/TrEMBL
  3.50.7.10 UniProtKB/TrEMBL
InterPro Chap_CCT_zeta UniProtKB/TrEMBL
  Chaperone_TCP-1 UniProtKB/TrEMBL
  Chaperonin_TCP-1_CS UniProtKB/TrEMBL
  Cpn60/TCP-1 UniProtKB/TrEMBL
  GroEL-like_apical_dom_sf UniProtKB/TrEMBL
  GROEL-like_equatorial_sf UniProtKB/TrEMBL
  TCP-1-like_intermed_sf UniProtKB/TrEMBL
  TCP-1_chaperonin UniProtKB/TrEMBL
KEGG Report ssc:102163415 UniProtKB/TrEMBL
NCBI Gene CCT6A ENTREZGENE
PANTHER PTHR11353 UniProtKB/TrEMBL
Pfam Cpn60_TCP1 UniProtKB/TrEMBL
PRINTS TCOMPLEXTCP1 UniProtKB/TrEMBL
PROSITE TCP1_1 UniProtKB/TrEMBL
  TCP1_2 UniProtKB/TrEMBL
  TCP1_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48592 UniProtKB/TrEMBL
  SSF52029 UniProtKB/TrEMBL
  SSF54849 UniProtKB/TrEMBL
UniProt A0A5G2R5Y6_PIG UniProtKB/TrEMBL
  A0A8D0UQ08 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XWE4_PIG UniProtKB/TrEMBL
  A0A8D1DI00 ENTREZGENE, UniProtKB/TrEMBL
  I3L9J4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:106569 ENTREZGENE