REST (RE1 silencing transcription factor) - Rat Genome Database

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Gene: REST (RE1 silencing transcription factor) Sus scrofa
Analyze
No known orthologs.
Symbol: REST
Name: RE1 silencing transcription factor
RGD ID: 14117188
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN auditory receptor cell stereocilium organization (ortholog); cardiac muscle cell myoblast differentiation (ortholog); cellular response to electrical stimulus (ortholog); ASSOCIATED WITH Binge Drinking (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RE1-silencing transcription factor
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl856,035,150 - 56,215,013 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1856,035,182 - 56,061,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2857,440,573 - 57,466,453 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
auditory receptor cell stereocilium organization  (ISO)
cardiac muscle cell myoblast differentiation  (ISS)
cellular response to electrical stimulus  (ISS)
cellular response to glucocorticoid stimulus  (ISS)
cellular response to stress  (ISO)
cellular response to xenobiotic stimulus  (ISS)
chromatin remodeling  (ISO)
detection of mechanical stimulus involved in sensory perception of sound  (ISO)
hematopoietic progenitor cell differentiation  (ISO)
modification of synaptic structure  (ISO)
negative regulation by host of viral transcription  (ISS)
negative regulation of aldosterone biosynthetic process  (ISS)
negative regulation of amniotic stem cell differentiation  (ISS)
negative regulation of calcium ion-dependent exocytosis  (ISS)
negative regulation of cell population proliferation  (ISS)
negative regulation of cortisol biosynthetic process  (ISS)
negative regulation of dense core granule biogenesis  (ISS)
negative regulation of DNA-templated transcription  (IBA,ISO,ISS)
negative regulation of gene expression  (ISS)
negative regulation of insulin secretion  (ISS)
negative regulation of neurogenesis  (ISO,ISS)
negative regulation of neuron differentiation  (IBA,ISO,ISS)
negative regulation of transcription by RNA polymerase II  (IEA)
neuromuscular process controlling balance  (ISO)
neuron differentiation  (ISO)
neuronal stem cell population maintenance  (ISO)
positive regulation of apoptotic process  (ISS)
positive regulation of gene expression  (ISO)
positive regulation of neuron differentiation  (ISO)
positive regulation of programmed cell death  (ISO)
positive regulation of transcription by RNA polymerase II  (IBA)
regulation of alternative mRNA splicing, via spliceosome  (ISO)
regulation of gene expression  (ISO)
regulation of osteoblast differentiation  (ISO)
response to ethanol  (ISO)
response to ischemia  (ISO)
somatic stem cell population maintenance  (ISO)

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Variants

.
Variants in REST
338 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000009736   ⟹   ENSSSCP00000009485
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl856,035,996 - 56,061,136 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000030837   ⟹   ENSSSCP00000021593
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl856,042,401 - 56,215,013 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000057786   ⟹   ENSSSCP00000058271
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl856,035,996 - 56,211,275 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000058507   ⟹   ENSSSCP00000037108
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl856,194,440 - 56,215,011 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000064442   ⟹   ENSSSCP00000053691
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl856,035,179 - 56,061,138 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000069859   ⟹   ENSSSCP00000061897
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl856,036,033 - 56,061,132 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000082541   ⟹   ENSSSCP00000073132
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl856,035,996 - 56,061,139 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000088666   ⟹   ENSSSCP00000060811
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl856,035,150 - 56,061,137 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000088744   ⟹   ENSSSCP00000073121
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl856,035,176 - 56,059,928 (+)Ensembl
RefSeq Acc Id: XM_003129021   ⟹   XP_003129069
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1856,035,182 - 56,061,140 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005666690   ⟹   XP_005666747
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1856,035,993 - 56,061,140 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003129069   ⟸   XM_003129021
- UniProtKB: A0A8D0ZLR5 (UniProtKB/TrEMBL),   A0A287BB02 (UniProtKB/TrEMBL),   A0A8D1K1H2 (UniProtKB/TrEMBL),   A0A8D1YF15 (UniProtKB/TrEMBL),   F1RTW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005666747   ⟸   XM_005666690
- UniProtKB: A0A8D0ZLR5 (UniProtKB/TrEMBL),   A0A287BB02 (UniProtKB/TrEMBL),   F1RTW1 (UniProtKB/TrEMBL),   A0A8D1K1H2 (UniProtKB/TrEMBL),   A0A8D1YF15 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000021593   ⟸   ENSSSCT00000030837
Ensembl Acc Id: ENSSSCP00000053691   ⟸   ENSSSCT00000064442
Ensembl Acc Id: ENSSSCP00000060811   ⟸   ENSSSCT00000088666
Ensembl Acc Id: ENSSSCP00000073121   ⟸   ENSSSCT00000088744
Ensembl Acc Id: ENSSSCP00000037108   ⟸   ENSSSCT00000058507
Ensembl Acc Id: ENSSSCP00000009485   ⟸   ENSSSCT00000009736
Ensembl Acc Id: ENSSSCP00000061897   ⟸   ENSSSCT00000069859
Ensembl Acc Id: ENSSSCP00000073132   ⟸   ENSSSCT00000082541
Ensembl Acc Id: ENSSSCP00000058271   ⟸   ENSSSCT00000057786
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023357 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00000058108 UniProtKB/TrEMBL
  ENSSSCG00025010004 UniProtKB/TrEMBL
  ENSSSCG00025026689 UniProtKB/TrEMBL
  ENSSSCG00035034995 UniProtKB/TrEMBL
  ENSSSCG00045000832 UniProtKB/TrEMBL
  ENSSSCG00050008181 UniProtKB/TrEMBL
  ENSSSCG00050011301 UniProtKB/TrEMBL
  ENSSSCG00055019723 UniProtKB/TrEMBL
  ENSSSCG00055019822 UniProtKB/TrEMBL
  ENSSSCG00065033684 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000058507.3 UniProtKB/TrEMBL
  ENSSSCT00000064442 ENTREZGENE
  ENSSSCT00000064442.3 UniProtKB/TrEMBL
  ENSSSCT00000069859 ENTREZGENE
  ENSSSCT00000069859.1 UniProtKB/TrEMBL
  ENSSSCT00025013178.1 UniProtKB/TrEMBL
  ENSSSCT00025036170.1 UniProtKB/TrEMBL
  ENSSSCT00025036231.1 UniProtKB/TrEMBL
  ENSSSCT00035046377.1 UniProtKB/TrEMBL
  ENSSSCT00045001207.1 UniProtKB/TrEMBL
  ENSSSCT00050011158.1 UniProtKB/TrEMBL
  ENSSSCT00050015209.1 UniProtKB/TrEMBL
  ENSSSCT00055038634.1 UniProtKB/TrEMBL
  ENSSSCT00055038837.1 UniProtKB/TrEMBL
  ENSSSCT00055038887.1 UniProtKB/TrEMBL
  ENSSSCT00055038920.1 UniProtKB/TrEMBL
  ENSSSCT00055038969.1 UniProtKB/TrEMBL
  ENSSSCT00055039015.1 UniProtKB/TrEMBL
  ENSSSCT00065045791.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Zinc_finger/UBP_domain UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report ssc:100520754 UniProtKB/TrEMBL
  ssc:100621006 UniProtKB/TrEMBL
NCBI Gene REST ENTREZGENE
PANTHER RE1-SILENCING TRANSCRIPTION FACTOR UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_5 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A287BB02 ENTREZGENE
  A0A5G2QE18_PIG UniProtKB/TrEMBL
  A0A8D0ZLR5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1K1H2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1R5Z7_PIG UniProtKB/TrEMBL
  A0A8D1R871_PIG UniProtKB/TrEMBL
  A0A8D1R8G3_PIG UniProtKB/TrEMBL
  A0A8D1R9F0_PIG UniProtKB/TrEMBL
  A0A8D1YF15 ENTREZGENE, UniProtKB/TrEMBL
  F1RTW1 ENTREZGENE, UniProtKB/TrEMBL
  F4YEI7_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287BB02 UniProtKB/TrEMBL