HRG (histidine rich glycoprotein) - Rat Genome Database

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Gene: HRG (histidine rich glycoprotein) Sus scrofa
Analyze
Symbol: HRG
Name: histidine rich glycoprotein
RGD ID: 14109743
Description: ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (inferred); heme binding (inferred); heparan sulfate proteoglycan binding (inferred); INVOLVED IN fibrinolysis (ortholog); negative regulation of blood vessel endothelial cell migration (ortholog); negative regulation of fibrinolysis (ortholog); ASSOCIATED WITH 3MC syndrome 1 (ortholog); Breast Neoplasms (ortholog); Carotid Atherosclerosis (ortholog); FOUND IN cell surface (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: histidine-rich glycoprotein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13124,505,312 - 124,516,705 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113124,505,305 - 124,516,387 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213133,895,233 - 133,906,338 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HRG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13124,505,312 - 124,516,705 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113124,505,305 - 124,516,387 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213133,895,233 - 133,906,338 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HRG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383186,666,014 - 186,678,234 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3186,660,216 - 186,678,234 (+)EnsemblGRCh38hg38GRCh38
GRCh373186,383,803 - 186,396,023 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363187,866,492 - 187,878,717 (+)NCBINCBI36Build 36hg18NCBI36
Build 343187,866,499 - 187,878,724NCBI
Celera3184,820,230 - 184,832,456 (+)NCBICelera
Cytogenetic Map3q27.3NCBI
HuRef3183,793,470 - 183,805,692 (+)NCBIHuRef
CHM1_13186,347,752 - 186,359,974 (+)NCBICHM1_1
T2T-CHM13v2.03189,487,766 - 189,499,996 (+)NCBIT2T-CHM13v2.0
Hrg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391622,769,822 - 22,780,409 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1622,769,822 - 22,780,406 (+)EnsemblGRCm39 Ensembl
GRCm381622,951,072 - 22,961,659 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1622,951,072 - 22,961,656 (+)EnsemblGRCm38mm10GRCm38
MGSCv371622,951,145 - 22,961,732 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361622,866,448 - 22,876,980 (+)NCBIMGSCv36mm8
Celera1623,511,005 - 23,521,593 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1613.79NCBI
Hrg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,559,087 - 91,573,982 (-)NCBIGRCr8
mRatBN7.21178,054,488 - 78,069,402 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1178,054,498 - 78,069,389 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1186,804,961 - 86,819,853 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01179,463,216 - 79,478,058 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01178,519,273 - 78,534,165 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01181,621,274 - 81,639,938 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1181,621,283 - 81,639,952 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01184,718,226 - 84,736,651 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41180,248,578 - 80,264,179 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11180,306,169 - 80,321,768 (-)NCBI
Celera1176,927,058 - 76,941,902 (-)NCBICelera
Cytogenetic Map11q23NCBI
Hrg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542021,019,212 - 21,032,976 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542021,020,938 - 21,033,022 (-)NCBIChiLan1.0ChiLan1.0
HRG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22184,541,834 - 184,554,072 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13184,546,549 - 184,558,787 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03183,701,069 - 183,712,365 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13192,168,299 - 192,180,539 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3192,168,299 - 192,180,539 (+)Ensemblpanpan1.1panPan2
HRG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13419,276,487 - 19,286,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3419,276,549 - 19,286,537 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3423,361,891 - 23,371,917 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03419,187,471 - 19,197,522 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3419,187,509 - 19,197,783 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13419,219,778 - 19,229,696 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03419,219,621 - 19,229,772 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03419,448,102 - 19,458,128 (+)NCBIUU_Cfam_GSD_1.0
Hrg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602117,193,744 - 117,204,015 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365783,285,986 - 3,295,876 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365783,285,986 - 3,295,876 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HRG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1152,753,819 - 2,766,946 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl152,753,810 - 2,766,478 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606311,490,597 - 11,503,244 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hrg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473070,070,302 - 70,086,256 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HRG
251 total Variants

Expression

RNA-SEQ Expression

ectoderm
mesenchyme
nervous system
renal system
2 2 2 2

Sequence


Ensembl Acc Id: ENSSSCT00000012913   ⟹   ENSSSCP00000012572
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13124,505,366 - 124,516,383 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000078006   ⟹   ENSSSCP00000069153
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13124,505,366 - 124,516,389 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000094311   ⟹   ENSSSCP00000080847
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13124,505,312 - 124,516,705 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000099706   ⟹   ENSSSCP00000081019
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13124,505,326 - 124,516,387 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000103053   ⟹   ENSSSCP00000077385
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13124,505,314 - 124,516,377 (+)Ensembl
RefSeq Acc Id: NM_001244639   ⟹   NP_001231568
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113124,505,305 - 124,516,387 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001231568 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000012572.4
  ENSSSCP00000069153.2
  ENSSSCP00000077385.1
  ENSSSCP00000080847
  ENSSSCP00000080847.1
  ENSSSCP00000081019.1
  ENSSSCP00040040350.1
RefSeq Acc Id: NP_001231568   ⟸   NM_001244639
- Peptide Label: precursor
- UniProtKB: A0A481B9A6 (UniProtKB/TrEMBL),   A0A8D1FNV7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000069153   ⟸   ENSSSCT00000078006
Ensembl Acc Id: ENSSSCP00000012572   ⟸   ENSSSCT00000012913
Ensembl Acc Id: ENSSSCP00000081019   ⟸   ENSSSCT00000099706
Ensembl Acc Id: ENSSSCP00000080847   ⟸   ENSSSCT00000094311
Ensembl Acc Id: ENSSSCP00000077385   ⟸   ENSSSCT00000103053
Protein Domains
Cystatin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011801 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00040066945 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012913.5 UniProtKB/TrEMBL
  ENSSSCT00000078006.2 UniProtKB/TrEMBL
  ENSSSCT00000094311 ENTREZGENE
  ENSSSCT00000094311.1 UniProtKB/TrEMBL
  ENSSSCT00000099706.1 UniProtKB/TrEMBL
  ENSSSCT00000103053.1 UniProtKB/TrEMBL
  ENSSSCT00040091502.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.10 UniProtKB/TrEMBL
InterPro Cystatin_dom UniProtKB/TrEMBL
  Cystatin_sf UniProtKB/TrEMBL
  Kininogen_Fetuin_HRG UniProtKB/TrEMBL
NCBI Gene HRG ENTREZGENE
PANTHER FETUIN UniProtKB/TrEMBL
  HISTIDINE-RICH GLYCOPROTEIN UniProtKB/TrEMBL
Pfam Cystatin UniProtKB/TrEMBL
SMART SM00043 UniProtKB/TrEMBL
Superfamily-SCOP SSF54403 UniProtKB/TrEMBL
UniProt A0A481B9A6 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QYD6_PIG UniProtKB/TrEMBL
  A0A8D1FNV7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FDA7_PIG UniProtKB/TrEMBL
  A0A8W4FPY4_PIG UniProtKB/TrEMBL
  F1SFI5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:88972 ENTREZGENE