MBD5 (methyl-CpG binding domain protein 5) - Rat Genome Database

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Gene: MBD5 (methyl-CpG binding domain protein 5) Sus scrofa
Analyze
Symbol: MBD5
Name: methyl-CpG binding domain protein 5
RGD ID: 14099718
Description: ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN glucose homeostasis (ortholog); nervous system development (ortholog); positive regulation of growth hormone receptor signaling pathway (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN chromocenter (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: methyl-CpG-binding domain protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl153,659,012 - 3,725,208 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1153,649,859 - 4,096,459 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2153,337,836 - 3,346,811 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MBD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl153,659,012 - 3,725,208 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1153,649,859 - 4,096,459 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2153,337,836 - 3,346,811 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MBD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382148,020,927 - 148,516,971 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2148,021,011 - 148,516,971 (+)EnsemblGRCh38hg38GRCh38
GRCh372148,778,580 - 149,274,540 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362148,932,508 - 148,987,516 (+)NCBINCBI36Build 36hg18NCBI36
Build 342149,049,769 - 149,104,774NCBI
Celera2142,492,728 - 142,985,183 (+)NCBICelera
Cytogenetic Map2q23.1NCBI
HuRef2140,776,638 - 141,269,422 (+)NCBIHuRef
CHM1_12148,784,226 - 149,276,488 (+)NCBICHM1_1
T2T-CHM13v2.02148,471,381 - 148,967,332 (+)NCBIT2T-CHM13v2.0
Mbd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39248,839,511 - 49,209,702 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl248,839,520 - 49,215,417 (+)EnsemblGRCm39 Ensembl
GRCm38248,949,499 - 49,319,688 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl248,949,508 - 49,325,405 (+)EnsemblGRCm38mm10GRCm38
MGSCv37248,805,028 - 49,172,589 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36249,064,365 - 49,139,005 (+)NCBIMGSCv36mm8
Celera250,621,661 - 50,990,507 (+)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map228.43NCBI
Mbd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8353,742,458 - 54,147,970 (+)NCBIGRCr8
mRatBN7.2333,588,854 - 33,738,730 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl333,333,554 - 33,730,156 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0333,364,812 - 33,504,144 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl333,440,191 - 33,504,238 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0338,600,038 - 38,663,451 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera331,856,644 - 31,921,520 (+)NCBICelera
Cytogenetic Map3q12NCBI
Mbd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544014,270,407 - 14,413,597 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544014,267,802 - 14,412,949 (+)NCBIChiLan1.0ChiLan1.0
MBD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21326,413,395 - 26,910,550 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B26,428,361 - 26,924,995 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B11,347,218 - 11,842,644 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B152,380,363 - 152,874,042 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B152,754,368 - 152,874,042 (+)Ensemblpanpan1.1panPan2
MBD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11949,815,388 - 50,250,071 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1950,186,364 - 50,247,398 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1950,145,330 - 50,371,739 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01951,494,265 - 51,720,677 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1951,494,282 - 51,728,134 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11950,139,740 - 50,365,810 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01950,274,378 - 50,500,930 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01951,671,900 - 51,898,368 (+)NCBIUU_Cfam_GSD_1.0
Mbd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303112,486,058 - 112,872,593 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646928,744,814 - 28,802,776 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646928,748,499 - 28,889,679 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MBD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11033,401,903 - 33,907,307 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1033,743,166 - 33,904,508 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040165,632,515 - 166,137,209 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mbd5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248661,105,616 - 1,162,288 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248661,003,279 - 1,162,545 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MBD5
14731 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021076098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021076115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002339404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002339405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002339406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK393332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU469180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01119323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000017065   ⟹   ENSSSCP00000016610
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl153,659,012 - 3,725,208 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000053338   ⟹   ENSSSCP00000050061
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl153,692,153 - 4,096,248 (-)Ensembl
RefSeq Acc Id: XM_021076098   ⟹   XP_020931757
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,096,313 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076099   ⟹   XP_020931758
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,096,303 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076101   ⟹   XP_020931760
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,096,459 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076102   ⟹   XP_020931761
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,049,696 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076103   ⟹   XP_020931762
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,096,290 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076104   ⟹   XP_020931763
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,096,309 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076105   ⟹   XP_020931764
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,096,303 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076106   ⟹   XP_020931765
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,096,459 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076107   ⟹   XP_020931766
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 3,972,220 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076108   ⟹   XP_020931767
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 3,969,734 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076109   ⟹   XP_020931768
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 3,969,734 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076110   ⟹   XP_020931769
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,096,290 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076111   ⟹   XP_020931770
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 3,738,918 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076112   ⟹   XP_020931771
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,096,313 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076113   ⟹   XP_020931772
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,096,313 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076114   ⟹   XP_020931773
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,096,313 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076115   ⟹   XP_020931774
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,096,313 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002339404
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,649,859 - 4,096,313 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002339405
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,096,313 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002339406
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1153,651,441 - 4,096,313 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020931765   ⟸   XM_021076106
- Peptide Label: isoform X1
- UniProtKB: A0A8D1GFN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931760   ⟸   XM_021076101
- Peptide Label: isoform X1
- UniProtKB: A0A8D1GFN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931773   ⟸   XM_021076114
- Peptide Label: isoform X4
- UniProtKB: A0A480NMQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931772   ⟸   XM_021076113
- Peptide Label: isoform X3
- UniProtKB: A0A8D0VHD9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931774   ⟸   XM_021076115
- Peptide Label: isoform X5
- UniProtKB: A0A480IVZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931771   ⟸   XM_021076112
- Peptide Label: isoform X2
- UniProtKB: A0A8D0SRT0 (UniProtKB/TrEMBL),   F1S0H8 (UniProtKB/TrEMBL),   A0A8D1GFN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931757   ⟸   XM_021076098
- Peptide Label: isoform X1
- UniProtKB: A0A8D1GFN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931763   ⟸   XM_021076104
- Peptide Label: isoform X1
- UniProtKB: A0A8D1GFN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931758   ⟸   XM_021076099
- Peptide Label: isoform X1
- UniProtKB: A0A8D1GFN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931764   ⟸   XM_021076105
- Peptide Label: isoform X1
- UniProtKB: A0A8D1GFN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931769   ⟸   XM_021076110
- Peptide Label: isoform X1
- UniProtKB: A0A8D1GFN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931762   ⟸   XM_021076103
- Peptide Label: isoform X1
- UniProtKB: A0A8D1GFN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931761   ⟸   XM_021076102
- Peptide Label: isoform X1
- UniProtKB: A0A8D1GFN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931766   ⟸   XM_021076107
- Peptide Label: isoform X1
- UniProtKB: A0A8D1GFN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931767   ⟸   XM_021076108
- Peptide Label: isoform X1
- UniProtKB: A0A8D1GFN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931768   ⟸   XM_021076109
- Peptide Label: isoform X1
- UniProtKB: A0A8D1GFN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931770   ⟸   XM_021076111
- Peptide Label: isoform X1
- UniProtKB: A0A8D1GFN6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000016610   ⟸   ENSSSCT00000017065
Ensembl Acc Id: ENSSSCP00000050061   ⟸   ENSSSCT00000053338
Protein Domains
MBD   PWWP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015667 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015061073 UniProtKB/TrEMBL
  ENSSSCG00025058538 UniProtKB/TrEMBL
  ENSSSCG00030009656 UniProtKB/TrEMBL
  ENSSSCG00035069566 UniProtKB/TrEMBL
  ENSSSCG00040076052 UniProtKB/TrEMBL
  ENSSSCG00045039349 UniProtKB/TrEMBL
  ENSSSCG00060007855 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017065 ENTREZGENE
  ENSSSCT00000017065.5 UniProtKB/TrEMBL
  ENSSSCT00015081678.1 UniProtKB/TrEMBL
  ENSSSCT00025080405.1 UniProtKB/TrEMBL
  ENSSSCT00030013221.1 UniProtKB/TrEMBL
  ENSSSCT00030013239.1 UniProtKB/TrEMBL
  ENSSSCT00035094008.1 UniProtKB/TrEMBL
  ENSSSCT00040105808.1 UniProtKB/TrEMBL
  ENSSSCT00040105814.1 UniProtKB/TrEMBL
  ENSSSCT00045068498.1 UniProtKB/TrEMBL
  ENSSSCT00045068507.1 UniProtKB/TrEMBL
  ENSSSCT00060010019.1 UniProtKB/TrEMBL
  ENSSSCT00060010027.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
InterPro DNA-bd_dom_sf UniProtKB/TrEMBL
  Methyl_CpG_DNA-bd UniProtKB/TrEMBL
  PWWP_dom UniProtKB/TrEMBL
NCBI Gene MBD5 ENTREZGENE
PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 5 UniProtKB/TrEMBL
  PTHR16112 UniProtKB/TrEMBL
Pfam PWWP UniProtKB/TrEMBL
PROSITE MBD UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
SMART MBD UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
Superfamily-SCOP SSF54171 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A480IVZ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A480NMQ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SRT0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VHD9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1GFN6 ENTREZGENE, UniProtKB/TrEMBL
  F1S0H8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:95940 ENTREZGENE