AKR1B1 (aldo-keto reductase family 1 member B) - Rat Genome Database

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Gene: AKR1B1 (aldo-keto reductase family 1 member B) Sus scrofa
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Symbol: AKR1B1
Name: aldo-keto reductase family 1 member B
RGD ID: 14086136
Description: ENCODES a protein that exhibits cis-1,2-dihydro-1,2-dihydroxynaphthalene dehydrogenase activity (ortholog); retinal dehydrogenase activity (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); cellular response to methylglyoxal (ortholog); cellular response to peptide (ortholog); PARTICIPATES IN D-glycericacidemia pathway; dopa responsive dystonia pathway; familial lipoprotein lipase deficiency pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Albuminuria (ortholog); allergic disease (ortholog); FOUND IN extracellular space (ortholog); mast cell granule (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: aldehyde reductase; aldo-keto reductase family 1 member B1; aldo-keto reductase family 1, member B1 (aldose reductase); aldose reductase; ALR2; AR
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1814,684,036 - 14,752,310 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11814,593,516 - 14,752,316 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21815,596,806 - 15,614,673 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:1621098   PMID:1734286   PMID:8281941   PMID:8493902   PMID:9195881   PMID:14681463   PMID:15162486   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
AKR1B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1814,684,036 - 14,752,310 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11814,593,516 - 14,752,316 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21815,596,806 - 15,614,673 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AKR1B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387134,442,350 - 134,459,239 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7134,442,356 - 134,459,284 (-)EnsemblGRCh38hg38GRCh38
GRCh377134,127,102 - 134,143,991 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367133,777,647 - 133,794,428 (-)NCBINCBI36Build 36hg18NCBI36
Build 347133,584,361 - 133,601,143NCBI
Celera7128,864,507 - 128,881,287 (-)NCBICelera
Cytogenetic Map7q33NCBI
HuRef7128,428,754 - 128,445,534 (-)NCBIHuRef
CHM1_17134,061,391 - 134,078,169 (-)NCBICHM1_1
T2T-CHM13v2.07135,750,388 - 135,767,276 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27133,471,421 - 133,488,201 (-)NCBI
Akr1b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39634,280,865 - 34,294,424 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl634,279,369 - 34,294,413 (-)EnsemblGRCm39 Ensembl
GRCm38634,303,930 - 34,317,489 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl634,302,434 - 34,317,478 (-)EnsemblGRCm38mm10GRCm38
MGSCv37634,253,930 - 34,267,489 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36634,234,092 - 34,247,629 (-)NCBIMGSCv36mm8
Celera634,300,847 - 34,314,402 (-)NCBICelera
Cytogenetic Map6B1NCBI
cM Map614.87NCBI
Akr1b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8463,899,222 - 63,913,315 (-)NCBIGRCr8
mRatBN7.2462,932,033 - 62,946,126 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl462,932,031 - 62,946,157 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx467,882,584 - 67,896,684 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0463,798,307 - 63,812,409 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0462,200,710 - 62,214,808 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0461,706,866 - 61,720,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl461,706,864 - 61,720,956 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0461,426,190 - 61,440,279 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4461,645,438 - 61,659,530 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1461,921,567 - 61,935,660 (-)NCBI
Celera457,984,561 - 57,998,653 (-)NCBICelera
RH 3.4 Map4393.32RGD
Cytogenetic Map4q22NCBI
AKR1B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26171,258,419 - 171,275,280 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1723,268,674 - 23,285,469 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07126,400,861 - 126,417,756 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17138,907,448 - 138,924,317 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7138,912,953 - 138,924,095 (-)Ensemblpanpan1.1panPan2
AKR1B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1142,991,888 - 3,006,941 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl142,991,888 - 3,006,940 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha142,649,050 - 2,664,066 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0142,721,426 - 2,736,482 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl142,721,426 - 2,736,481 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1142,926,088 - 2,941,099 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0142,670,903 - 2,685,919 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0142,816,445 - 2,831,531 (+)NCBIUU_Cfam_GSD_1.0
Akr1b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511821,179,563 - 21,195,800 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365791,312,175 - 1,328,397 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103226928
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121103,060,018 - 103,076,844 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21103,059,991 - 103,077,341 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666042271,394 - 288,078 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in AKR1B1
6058 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000065341   ⟹   ENSSSCP00000039171
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1814,684,036 - 14,752,310 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000077521   ⟹   ENSSSCP00000064633
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1814,684,036 - 14,749,894 (+)Ensembl
RefSeq Acc Id: NM_001001539   ⟹   NP_001001539
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11814,734,092 - 14,751,956 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078497   ⟹   XP_020934156
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11814,593,516 - 14,752,316 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078498   ⟹   XP_020934157
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11814,593,534 - 14,752,316 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020934156   ⟸   XM_021078497
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020934157   ⟸   XM_021078498
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001001539   ⟸   NM_001001539
- UniProtKB: P80276 (UniProtKB/Swiss-Prot),   A0A4X1VTL4 (UniProtKB/TrEMBL),   A0A0B8S0C2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000039171   ⟸   ENSSSCT00000065341
Ensembl Acc Id: ENSSSCP00000064633   ⟸   ENSSSCT00000077521

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040608 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015045428 UniProtKB/TrEMBL
  ENSSSCG00070026237 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000065341 ENTREZGENE
  ENSSSCT00000065341.3 UniProtKB/TrEMBL
  ENSSSCT00000077521.2 UniProtKB/TrEMBL
  ENSSSCT00015060766.1 UniProtKB/TrEMBL
  ENSSSCT00070052556.1 UniProtKB/TrEMBL
  ENSSSCT00070052578.1 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Aldo/ket_reductase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aldo/keto_reductase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NADP_OxRdtase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NADP_OxRdtase_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:396816 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene AKR1B1 ENTREZGENE
PANTHER ALDO-KETO REDUCTASE FAMILY 1 MEMBER B1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ALDO/KETO REDUCTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Aldo_ket_red UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PIRSF AKR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS ALDKETRDTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ALDOKETO_REDUCTASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ALDOKETO_REDUCTASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ALDOKETO_REDUCTASE_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51430 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0B8S0C2 ENTREZGENE
  A0A287A5M7_PIG UniProtKB/TrEMBL
  A0A4X1VTJ3_PIG UniProtKB/TrEMBL
  A0A4X1VTL4 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R274_PIG UniProtKB/TrEMBL
  ALDR_PIG UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:109454 ENTREZGENE