OIP5 (Opa interacting protein 5) - Rat Genome Database

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Gene: OIP5 (Opa interacting protein 5) Sus scrofa
Analyze
Symbol: OIP5
Name: Opa interacting protein 5
RGD ID: 14076830
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN cell division (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); mosaic variegated aneuploidy syndrome 1 (ortholog); FOUND IN Cajal body (inferred); chromatin (inferred); chromocenter (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein Mis18-beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,036,480 - 130,047,041 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,036,478 - 130,054,058 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,057,619 - 145,065,691 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
OIP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,036,480 - 130,047,041 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,036,478 - 130,054,058 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,057,619 - 145,065,691 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OIP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381541,309,273 - 41,332,591 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1541,309,273 - 41,332,591 (-)EnsemblGRCh38hg38GRCh38
GRCh371541,601,471 - 41,624,789 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361539,388,758 - 39,412,111 (-)NCBINCBI36Build 36hg18NCBI36
Build 341539,388,759 - 39,412,111NCBI
Celera1518,369,443 - 18,392,796 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1518,450,035 - 18,473,264 (-)NCBIHuRef
CHM1_11541,719,576 - 41,742,481 (-)NCBICHM1_1
T2T-CHM13v2.01539,115,437 - 39,138,755 (-)NCBIT2T-CHM13v2.0
Oip5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,440,013 - 119,448,986 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2119,439,993 - 119,448,950 (-)EnsemblGRCm39 Ensembl
GRCm382119,609,532 - 119,618,505 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,609,512 - 119,618,469 (-)EnsemblGRCm38mm10GRCm38
MGSCv372119,435,268 - 119,444,241 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362119,435,268 - 119,444,241 (-)NCBIMGSCv36mm8
Celera2120,763,329 - 120,772,134 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.97NCBI
Oip5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,047,559 - 127,057,043 (-)NCBIGRCr8
mRatBN7.23106,593,746 - 106,603,281 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,593,760 - 106,603,250 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3110,271,202 - 110,280,663 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,866,747 - 118,876,208 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,527,136 - 116,536,597 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03111,413,662 - 111,422,320 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,416,536 - 111,422,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03117,962,273 - 117,970,788 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,124,769 - 106,134,136 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3105,506,665 - 105,515,085 (-)NCBICelera
Cytogenetic Map3q35NCBI
Oip5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,168,319 - 8,179,408 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,168,143 - 8,178,459 (-)NCBIChiLan1.0ChiLan1.0
OIP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21630,550,470 - 30,573,940 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11534,701,061 - 34,725,232 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01520,250,339 - 20,273,856 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11538,494,534 - 38,517,304 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1538,494,534 - 38,517,300 (-)Ensemblpanpan1.1panPan2
OIP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1308,377,407 - 8,396,222 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl308,381,395 - 8,396,096 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,437,465 - 8,455,625 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0308,512,598 - 8,530,805 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl308,515,075 - 8,530,717 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1308,433,103 - 8,452,262 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0308,541,602 - 8,559,792 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0308,672,914 - 8,691,126 (-)NCBIUU_Cfam_GSD_1.0
Oip5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,844,351 - 86,857,626 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364714,692,099 - 4,705,984 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364714,692,482 - 4,705,643 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OIP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12641,667,929 - 41,682,056 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604899,290,564 - 99,305,942 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Oip5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248048,488,497 - 8,510,350 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248048,492,634 - 8,510,465 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in OIP5
107 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000005249   ⟹   ENSSSCP00000005122
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1130,036,487 - 130,047,023 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000081982   ⟹   ENSSSCP00000066816
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1130,036,480 - 130,047,041 (+)Ensembl
RefSeq Acc Id: XM_003121583   ⟹   XP_003121631
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11130,036,478 - 130,054,058 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013993152   ⟹   XP_013848606
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11130,036,482 - 130,054,058 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003121631   ⟸   XM_003121583
- Peptide Label: isoform X1
- UniProtKB: A0A4X1USP8 (UniProtKB/TrEMBL),   A0A8D1MIX2 (UniProtKB/TrEMBL),   A0A8D0KG08 (UniProtKB/TrEMBL),   F1SSV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013848606   ⟸   XM_013993152
- Peptide Label: isoform X2
- UniProtKB: A0A8D1RR02 (UniProtKB/TrEMBL),   A0A5G2R882 (UniProtKB/TrEMBL),   A0A8D1MH75 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000005122   ⟸   ENSSSCT00000005249
Ensembl Acc Id: ENSSSCP00000066816   ⟸   ENSSSCT00000081982
Protein Domains
Mis18


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004750 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015054835 UniProtKB/TrEMBL
  ENSSSCG00025015201 UniProtKB/TrEMBL
  ENSSSCG00030035329 UniProtKB/TrEMBL
  ENSSSCG00035073813 UniProtKB/TrEMBL
  ENSSSCG00045012009 UniProtKB/TrEMBL
  ENSSSCG00050041969 UniProtKB/TrEMBL
  ENSSSCG00055024308 UniProtKB/TrEMBL
  ENSSSCG00060039241 UniProtKB/TrEMBL
  ENSSSCG00065073612 UniProtKB/TrEMBL
  ENSSSCG00070019899 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005249 ENTREZGENE
  ENSSSCT00000005249.5 UniProtKB/TrEMBL
  ENSSSCT00000081982 ENTREZGENE
  ENSSSCT00000081982.2 UniProtKB/TrEMBL
  ENSSSCT00015072989.1 UniProtKB/TrEMBL
  ENSSSCT00015073064.1 UniProtKB/TrEMBL
  ENSSSCT00025020362.1 UniProtKB/TrEMBL
  ENSSSCT00025020371.1 UniProtKB/TrEMBL
  ENSSSCT00030048952.1 UniProtKB/TrEMBL
  ENSSSCT00030048976.1 UniProtKB/TrEMBL
  ENSSSCT00035100095.1 UniProtKB/TrEMBL
  ENSSSCT00035100099.1 UniProtKB/TrEMBL
  ENSSSCT00045020392.1 UniProtKB/TrEMBL
  ENSSSCT00045020418.1 UniProtKB/TrEMBL
  ENSSSCT00050057002.1 UniProtKB/TrEMBL
  ENSSSCT00050057009.1 UniProtKB/TrEMBL
  ENSSSCT00055047890.1 UniProtKB/TrEMBL
  ENSSSCT00055047951.1 UniProtKB/TrEMBL
  ENSSSCT00060053062.1 UniProtKB/TrEMBL
  ENSSSCT00060053069.1 UniProtKB/TrEMBL
  ENSSSCT00065101337.1 UniProtKB/TrEMBL
  ENSSSCT00065101352.1 UniProtKB/TrEMBL
  ENSSSCT00070039446.1 UniProtKB/TrEMBL
InterPro Mis18 UniProtKB/TrEMBL
  Yippee/Mis18/Cereblon UniProtKB/TrEMBL
KEGG Report ssc:100516409 UniProtKB/TrEMBL
NCBI Gene OIP5 ENTREZGENE
PANTHER NEUROGENIC PROTEIN MASTERMIND UniProtKB/TrEMBL
  PROTEIN MIS18-BETA UniProtKB/TrEMBL
Pfam Yippee-Mis18 UniProtKB/TrEMBL
PROSITE MIS18 UniProtKB/TrEMBL
UniProt A0A4X1USP8 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R882 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0KG08 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1MH75 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1MIX2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RR02 ENTREZGENE, UniProtKB/TrEMBL
  F1SSV3 ENTREZGENE
UniProt Secondary F1SSV3 UniProtKB/TrEMBL
VGNC ID VGNC:91029 ENTREZGENE