LOC100621006 (RE1-silencing transcription factor-like) - Rat Genome Database

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Gene: LOC100621006 (RE1-silencing transcription factor-like) Sus scrofa
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Symbol: LOC100621006 (Ensembl: REST)
Name: RE1-silencing transcription factor-like (Ensembl:RE1 silencing transcription factor)
RGD ID: 14063528
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN cardiac muscle cell myoblast differentiation (ortholog); cellular response to electrical stimulus (ortholog); cellular response to glucocorticoid stimulus (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 27 (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl856,035,150 - 56,215,013 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1856,048,280 - 56,215,011 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2858,971,014 - 58,992,811 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,IEA,ISS)
transcription repressor complex  (IBA,ISS)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100621006
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl856,035,150 - 56,215,013 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1856,048,280 - 56,215,011 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2858,971,014 - 58,992,811 (+)NCBISscrofa10.2Sscrofa10.2susScr3
REST
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38456,907,900 - 56,935,844 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl456,907,876 - 56,966,808 (+)EnsemblGRCh38hg38GRCh38
GRCh37457,774,066 - 57,802,010 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36457,468,799 - 57,493,097 (+)NCBINCBI36Build 36hg18NCBI36
Build 34457,614,969 - 57,639,268NCBI
Celera455,279,985 - 55,307,950 (+)NCBICelera
Cytogenetic Map4q12NCBI
HuRef453,727,986 - 53,755,535 (+)NCBIHuRef
CHM1_1457,809,465 - 57,837,418 (+)NCBICHM1_1
T2T-CHM13v2.0460,399,324 - 60,427,254 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in LOC100621006
2834 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSSCT00000064442   ⟹   ENSSSCP00000053691
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl856,035,179 - 56,061,138 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000069859   ⟹   ENSSSCP00000061897
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl856,036,033 - 56,061,132 (+)Ensembl
RefSeq Acc Id: XM_003356947   ⟹   XP_003356995
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1856,194,440 - 56,215,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005666715   ⟹   XP_005666772
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1856,193,517 - 56,215,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101377   ⟹   XP_020957036
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1856,048,280 - 56,215,011 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020957036   ⟸   XM_021101377
- UniProtKB: A0A8D0ZLR5 (UniProtKB/TrEMBL),   A0A287BB02 (UniProtKB/TrEMBL),   F1RTW1 (UniProtKB/TrEMBL),   A0A8D1K1H2 (UniProtKB/TrEMBL),   A0A8D1YF15 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005666772   ⟸   XM_005666715
- UniProtKB: A0A8D0ZLR5 (UniProtKB/TrEMBL),   A0A287BB02 (UniProtKB/TrEMBL),   A0A8D1K1H2 (UniProtKB/TrEMBL),   A0A8D1YF15 (UniProtKB/TrEMBL),   F1RTW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003356995   ⟸   XM_003356947
- UniProtKB: A0A8D0ZLR5 (UniProtKB/TrEMBL),   A0A287BB02 (UniProtKB/TrEMBL),   A0A8D1K1H2 (UniProtKB/TrEMBL),   A0A8D1YF15 (UniProtKB/TrEMBL),   F1RTW1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000061897   ⟸   ENSSSCT00000069859
Ensembl Acc Id: ENSSSCP00000053691   ⟸   ENSSSCT00000064442
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023357 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00000058108 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025010004 UniProtKB/TrEMBL
  ENSSSCG00025026689 UniProtKB/TrEMBL
  ENSSSCG00035034995 UniProtKB/TrEMBL
  ENSSSCG00045000832 UniProtKB/TrEMBL
  ENSSSCG00050008181 UniProtKB/TrEMBL
  ENSSSCG00050011301 UniProtKB/TrEMBL
  ENSSSCG00055019723 UniProtKB/TrEMBL
  ENSSSCG00055019822 UniProtKB/TrEMBL
  ENSSSCG00065033684 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000058507 ENTREZGENE
  ENSSSCT00000058507.3 UniProtKB/TrEMBL
  ENSSSCT00000064442.3 UniProtKB/TrEMBL
  ENSSSCT00000069859.1 UniProtKB/TrEMBL
  ENSSSCT00025013178.1 UniProtKB/TrEMBL
  ENSSSCT00025036170.1 UniProtKB/TrEMBL
  ENSSSCT00035046366.1 UniProtKB/TrEMBL
  ENSSSCT00035046377.1 UniProtKB/TrEMBL
  ENSSSCT00045001207.1 UniProtKB/TrEMBL
  ENSSSCT00050011158.1 UniProtKB/TrEMBL
  ENSSSCT00050015209.1 UniProtKB/TrEMBL
  ENSSSCT00055038634.1 UniProtKB/TrEMBL
  ENSSSCT00055038920.1 UniProtKB/TrEMBL
  ENSSSCT00065045791.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Zinc_finger/UBP_domain UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report ssc:100520754 UniProtKB/TrEMBL
  ssc:100621006 UniProtKB/TrEMBL
NCBI Gene LOC100621006 ENTREZGENE
PANTHER RE1-SILENCING TRANSCRIPTION FACTOR UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_5 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A287BB02 ENTREZGENE
  A0A5G2QE18_PIG UniProtKB/TrEMBL
  A0A8D0ZLK2_PIG UniProtKB/TrEMBL
  A0A8D0ZLR5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1K1H2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YF15 ENTREZGENE, UniProtKB/TrEMBL
  F1RTW1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287BB02 UniProtKB/TrEMBL