INCENP (inner centromere protein) - Rat Genome Database

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Gene: INCENP (inner centromere protein) Sus scrofa
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Symbol: INCENP
Name: inner centromere protein
RGD ID: 14062859
Description: ENCODES a protein that exhibits molecular function activator activity (inferred); INVOLVED IN cell division (inferred); chromosome segregation (inferred); mitotic cytokinesis (inferred); ASSOCIATED WITH Familial Prostate Cancer (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN central element (inferred); chromocenter (inferred); chromosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl29,411,942 - 9,445,821 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.129,411,942 - 9,445,825 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,858,115 - 8,889,717 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
INCENP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl29,411,942 - 9,445,821 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.129,411,942 - 9,445,825 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,858,115 - 8,889,717 (+)NCBISscrofa10.2Sscrofa10.2susScr3
INCENP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,124,011 - 62,153,169 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,123,998 - 62,155,474 (+)EnsemblGRCh38hg38GRCh38
GRCh371161,891,483 - 61,920,641 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361161,648,021 - 61,677,211 (+)NCBINCBI36Build 36hg18NCBI36
Build 341161,652,209 - 61,676,800NCBI
Celera1159,220,885 - 59,250,081 (+)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,219,712 - 58,248,907 (+)NCBIHuRef
CHM1_11161,774,635 - 61,803,822 (+)NCBICHM1_1
T2T-CHM13v2.01162,113,566 - 62,142,731 (+)NCBIT2T-CHM13v2.0
Incenp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39199,849,659 - 9,876,853 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl199,849,660 - 9,876,915 (-)EnsemblGRCm39 Ensembl
GRCm38199,872,295 - 9,899,489 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl199,872,296 - 9,899,551 (-)EnsemblGRCm38mm10GRCm38
MGSCv37199,946,787 - 9,974,023 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36199,939,391 - 9,966,514 (-)NCBIMGSCv36mm8
Celera1910,569,299 - 10,596,535 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map196.1NCBI
Incenp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,945,558 - 216,017,247 (-)NCBIGRCr8
mRatBN7.21206,520,655 - 206,550,575 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1206,523,380 - 206,553,265 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1214,895,199 - 214,921,937 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,956,915 - 221,983,258 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,651,921 - 214,678,265 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01225,923,448 - 225,953,384 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1225,925,773 - 225,952,516 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,871,812 - 232,901,748 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,326,516 - 212,352,859 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11212,485,269 - 212,549,851 (-)NCBI
Celera1204,019,020 - 204,045,363 (-)NCBICelera
Cytogenetic Map1q43NCBI
Incenp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555115,706,201 - 5,720,772 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555115,705,948 - 5,724,167 (-)NCBIChiLan1.0ChiLan1.0
INCENP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2963,357,689 - 63,388,402 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11164,401,321 - 64,432,034 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01157,488,790 - 57,519,552 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11160,846,199 - 60,876,553 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1160,846,199 - 60,874,540 (+)Ensemblpanpan1.1panPan2
INCENP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11854,361,376 - 54,384,649 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1854,361,378 - 54,384,641 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1852,931,294 - 52,954,651 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01855,414,975 - 55,438,324 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1855,414,975 - 55,439,285 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11854,476,651 - 54,496,677 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01854,084,698 - 54,108,057 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01854,949,474 - 54,972,843 (-)NCBIUU_Cfam_GSD_1.0
Incenp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,882,741 - 10,914,357 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936581999,497 - 1,025,062 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936581999,148 - 1,028,157 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INCENP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,695,803 - 11,725,633 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,692,559 - 11,720,940 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038109,041,245 - 109,071,336 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Incenp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624926407,362 - 419,566 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624926405,354 - 422,492 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in INCENP
1442 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000014282   ⟹   ENSSSCP00000013896
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl29,411,948 - 9,445,832 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000086215   ⟹   ENSSSCP00000071195
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl29,411,942 - 9,445,821 (-)Ensembl
RefSeq Acc Id: XM_021082921   ⟹   XP_020938580
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.129,411,942 - 9,445,825 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020938580   ⟸   XM_021082921
- UniProtKB: A0A4X1VKP9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000071195   ⟸   ENSSSCT00000086215
Ensembl Acc Id: ENSSSCP00000013896   ⟸   ENSSSCT00000014282

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013066 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015037217 UniProtKB/TrEMBL
  ENSSSCG00030004609 UniProtKB/TrEMBL
  ENSSSCG00040074827 UniProtKB/TrEMBL
  ENSSSCG00045031348 UniProtKB/TrEMBL
  ENSSSCG00055005523 UniProtKB/TrEMBL
  ENSSSCG00065063382 UniProtKB/TrEMBL
  ENSSSCG00070025180 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000086215 ENTREZGENE
  ENSSSCT00000086215.2 UniProtKB/TrEMBL
  ENSSSCT00015049475.1 UniProtKB/TrEMBL
  ENSSSCT00015049598.1 UniProtKB/TrEMBL
  ENSSSCT00015049704.1 UniProtKB/TrEMBL
  ENSSSCT00030006175.1 UniProtKB/TrEMBL
  ENSSSCT00030006180.1 UniProtKB/TrEMBL
  ENSSSCT00040103554.1 UniProtKB/TrEMBL
  ENSSSCT00040103558.1 UniProtKB/TrEMBL
  ENSSSCT00045053404.1 UniProtKB/TrEMBL
  ENSSSCT00055010797.1 UniProtKB/TrEMBL
  ENSSSCT00055010859.1 UniProtKB/TrEMBL
  ENSSSCT00055010942.1 UniProtKB/TrEMBL
  ENSSSCT00065086966.1 UniProtKB/TrEMBL
  ENSSSCT00065086982.1 UniProtKB/TrEMBL
  ENSSSCT00070050338.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.3600 UniProtKB/TrEMBL
  6.10.250.2990 UniProtKB/TrEMBL
InterPro INCENP_N UniProtKB/TrEMBL
  Inner_centromere_prot_ARK-bd UniProtKB/TrEMBL
NCBI Gene INCENP ENTREZGENE
PANTHER INNER CENTROMERE PROTEIN UniProtKB/TrEMBL
  PTHR13142 UniProtKB/TrEMBL
Pfam INCENP_ARK-bind UniProtKB/TrEMBL
  INCENP_N UniProtKB/TrEMBL
UniProt A0A4X1VKP9 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RAN6_PIG UniProtKB/TrEMBL
  A0A8D0NPG3_PIG UniProtKB/TrEMBL
  A0A8D1G3P8_PIG UniProtKB/TrEMBL
  A0A8D1G6Z8_PIG UniProtKB/TrEMBL
  A0A8D1PRV6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89130 ENTREZGENE