LOC100525409 (disintegrin and metalloproteinase domain-containing protein 20-like) - Rat Genome Database

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Gene: LOC100525409 (disintegrin and metalloproteinase domain-containing protein 20-like) Sus scrofa
Analyze
Symbol: LOC100525409
Name: disintegrin and metalloproteinase domain-containing protein 20-like
RGD ID: 14035781
Description: ENCODES a protein that exhibits metal ion binding (inferred); metalloendopeptidase activity (inferred); INVOLVED IN proteolysis (inferred); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1794,025,685 - 94,028,015 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27100,319,562 - 100,322,316 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:23550158   PMID:30032202  


Genomics

Variants

.
Variants in LOC100525409
22 total Variants

Expression

RNA-SEQ Expression

ectoderm
nervous system
1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021100076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021100076   ⟹   XP_020955735
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1794,025,685 - 94,028,015 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020955735 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000002519.3
  ENSSSCP00055042995.1
  ENSSSCP00070022382.1
RefSeq Acc Id: XP_020955735   ⟸   XM_021100076
- UniProtKB: A0A4X1U3Q7 (UniProtKB/TrEMBL),   F1S4A3 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Disintegrin   EGF-like   Peptidase M12B


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000058417 UniProtKB/TrEMBL
  ENSSSCG00055027260 UniProtKB/TrEMBL
  ENSSSCG00070013795 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002583.3 UniProtKB/TrEMBL
  ENSSSCT00055053884.1 UniProtKB/TrEMBL
  ENSSSCT00070026922.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.390.10 UniProtKB/TrEMBL
  4.10.70.10 UniProtKB/TrEMBL
InterPro ADAM_Cys-rich UniProtKB/TrEMBL
  Disintegrin_dom UniProtKB/TrEMBL
  Disintegrin_dom_sf UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  MetalloPept_cat_dom_sf UniProtKB/TrEMBL
  Peptidase_M12B UniProtKB/TrEMBL
  Peptidase_M12B_N UniProtKB/TrEMBL
  Reprolysin_adamalysin UniProtKB/TrEMBL
NCBI Gene LOC100525409 ENTREZGENE
PANTHER ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN UniProtKB/TrEMBL
  PTHR11905:SF167 UniProtKB/TrEMBL
Pfam ADAM_CR UniProtKB/TrEMBL
  Disintegrin UniProtKB/TrEMBL
  Pep_M12B_propep UniProtKB/TrEMBL
  Reprolysin UniProtKB/TrEMBL
PROSITE ADAM_MEPRO UniProtKB/TrEMBL
  DISINTEGRIN_2 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
SMART ACR UniProtKB/TrEMBL
  DISIN UniProtKB/TrEMBL
Superfamily-SCOP Metalloproteases ('zincins'), catalytic domain UniProtKB/TrEMBL
  SSF57552 UniProtKB/TrEMBL
UniProt A0A4X1U3Q7 ENTREZGENE, UniProtKB/TrEMBL
  F1S4A3 ENTREZGENE, UniProtKB/TrEMBL