CACNA1H (calcium voltage-gated channel subunit alpha1 H) - Rat Genome Database

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Gene: CACNA1H (calcium voltage-gated channel subunit alpha1 H) Sus scrofa
Analyze
Symbol: CACNA1H
Name: calcium voltage-gated channel subunit alpha1 H
RGD ID: 14033642
Description: ENCODES a protein that exhibits low voltage-gated calcium channel activity (ortholog); INVOLVED IN calcium ion import (ortholog); calcium ion transport (ortholog); positive regulation of cardiac muscle cell contraction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); autistic disorder (ortholog); beta thalassemia (ortholog); FOUND IN caveola (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog); INTERACTS WITH zearalenone
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent T-type calcium channel subunit alpha-1H
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,637,427 - 40,695,177 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1340,637,420 - 40,694,616 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
zearalenone  (EXP)

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway   (ISO)
calcium transport pathway   (ISO)
calcium/calcium-mediated signaling pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CACNA1H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,637,427 - 40,695,177 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1340,637,420 - 40,694,616 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CACNA1H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,153,106 - 1,221,768 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,153,103 - 1,224,169 (+)EnsemblGRCh38hg38GRCh38
GRCh37161,203,106 - 1,271,768 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,143,242 - 1,211,773 (+)NCBINCBI36Build 36hg18NCBI36
Build 34161,143,241 - 1,211,772NCBI
Celera161,418,957 - 1,487,666 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,111,743 - 1,204,831 (+)NCBIHuRef
CHM1_1161,179,129 - 1,271,446 (+)NCBICHM1_1
T2T-CHM13v2.0161,165,753 - 1,237,078 (+)NCBIT2T-CHM13v2.0
Cacna1h
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,593,259 - 25,655,308 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,593,259 - 25,652,759 (-)EnsemblGRCm39 Ensembl
GRCm381725,374,285 - 25,436,334 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,374,285 - 25,433,783 (-)EnsemblGRCm38mm10GRCm38
MGSCv371725,511,232 - 25,570,728 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,101,887 - 25,161,368 (-)NCBIMGSCv36mm8
Celera1725,902,087 - 25,961,468 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
Cacna1h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,894,630 - 14,952,317 (-)NCBIGRCr8
mRatBN7.21014,390,104 - 14,448,204 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,390,113 - 14,448,376 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1019,130,825 - 19,188,496 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01018,619,694 - 18,677,363 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,118,873 - 14,176,544 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,730,932 - 14,789,201 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,730,941 - 14,788,617 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,547,456 - 14,605,627 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,621,372 - 14,679,051 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11014,621,371 - 14,679,051 (-)NCBI
Celera1014,061,778 - 14,119,454 (-)NCBICelera
Cytogenetic Map10q12NCBI
Cacna1h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,045,895 - 16,108,862 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,047,965 - 16,108,862 (-)NCBIChiLan1.0ChiLan1.0
CACNA1H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2181,406,005 - 1,477,547 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1165,187,949 - 5,257,891 (+)NCBINHGRI_mPanPan1
PanPan1.1161,195,991 - 1,222,917 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl161,195,364 - 1,222,917 (+)Ensemblpanpan1.1panPan2
CACNA1H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,510,129 - 39,533,129 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,510,121 - 39,533,753 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,776,915 - 40,826,321 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,855,337 - 39,904,743 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,855,796 - 39,878,507 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,531,855 - 39,581,243 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,504,487 - 39,553,874 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,983,132 - 40,032,548 (-)NCBIUU_Cfam_GSD_1.0
Cacna1h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344103,984,951 - 104,007,239 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366942,702,224 - 2,724,574 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA1H
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,039,709 - 1,106,212 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,078,973 - 1,106,507 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,985,587 - 30,052,739 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacna1h
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249131,891,156 - 1,949,633 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249131,926,405 - 1,952,426 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CACNA1H
160 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
10 4 23 3 4 14 12 23 3 6

Sequence


Ensembl Acc Id: ENSSSCT00000040516   ⟹   ENSSSCP00000031360
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl340,637,427 - 40,694,190 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000066166   ⟹   ENSSSCP00000050025
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl340,637,427 - 40,694,190 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000092479   ⟹   ENSSSCP00000076356
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl340,639,628 - 40,694,872 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000096975   ⟹   ENSSSCP00000079678
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl340,638,182 - 40,694,928 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000098881   ⟹   ENSSSCP00000078942
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl340,639,628 - 40,694,190 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000102420   ⟹   ENSSSCP00000075038
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl340,637,741 - 40,695,177 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000102457   ⟹   ENSSSCP00000080108
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl340,639,181 - 40,694,872 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000102553   ⟹   ENSSSCP00000077007
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl340,638,182 - 40,694,679 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000104450   ⟹   ENSSSCP00000076037
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl340,638,724 - 40,694,883 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000106847   ⟹   ENSSSCP00000076275
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl340,638,182 - 40,694,679 (-)Ensembl
RefSeq Acc Id: XM_021086865   ⟹   XP_020942524
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1340,637,420 - 40,694,615 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086866   ⟹   XP_020942525
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1340,637,420 - 40,694,615 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086867   ⟹   XP_020942526
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1340,637,420 - 40,694,615 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086868   ⟹   XP_020942527
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1340,637,420 - 40,694,615 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086869   ⟹   XP_020942528
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1340,637,420 - 40,694,616 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086870   ⟹   XP_020942529
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1340,637,420 - 40,694,615 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086871   ⟹   XP_020942530
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1340,637,420 - 40,657,204 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020942528   ⟸   XM_021086869
- Peptide Label: isoform X5
- UniProtKB: A0A8D1UTS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942527   ⟸   XM_021086868
- Peptide Label: isoform X4
- UniProtKB: A0A480XM52 (UniProtKB/TrEMBL),   A0A8D1GD07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942526   ⟸   XM_021086867
- Peptide Label: isoform X3
- UniProtKB: A0A480VZD3 (UniProtKB/TrEMBL),   A0A8D1UTS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942525   ⟸   XM_021086866
- Peptide Label: isoform X2
- UniProtKB: A0A480XTJ5 (UniProtKB/TrEMBL),   A0A8D1UTS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942529   ⟸   XM_021086870
- Peptide Label: isoform X6
- UniProtKB: A0A8W4FMI0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942524   ⟸   XM_021086865
- Peptide Label: isoform X1
- UniProtKB: A0A8D1UTS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942530   ⟸   XM_021086871
- Peptide Label: isoform X7
- UniProtKB: A0A4X1T0X7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000031360   ⟸   ENSSSCT00000040516
Ensembl Acc Id: ENSSSCP00000050025   ⟸   ENSSSCT00000066166
Ensembl Acc Id: ENSSSCP00000080108   ⟸   ENSSSCT00000102457
Ensembl Acc Id: ENSSSCP00000076275   ⟸   ENSSSCT00000106847
Ensembl Acc Id: ENSSSCP00000078942   ⟸   ENSSSCT00000098881
Ensembl Acc Id: ENSSSCP00000075038   ⟸   ENSSSCT00000102420
Ensembl Acc Id: ENSSSCP00000076037   ⟸   ENSSSCT00000104450
Ensembl Acc Id: ENSSSCP00000077007   ⟸   ENSSSCT00000102553
Ensembl Acc Id: ENSSSCP00000076356   ⟸   ENSSSCT00000092479
Ensembl Acc Id: ENSSSCP00000079678   ⟸   ENSSSCT00000096975
Protein Domains
Ion transport


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000034266 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030063667 UniProtKB/TrEMBL
  ENSSSCG00040075136 UniProtKB/TrEMBL
  ENSSSCG00060024490 UniProtKB/TrEMBL
  ENSSSCG00070005322 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000040516.3 UniProtKB/TrEMBL
  ENSSSCT00000066166 ENTREZGENE
  ENSSSCT00000066166.3 UniProtKB/TrEMBL
  ENSSSCT00000092479.1 UniProtKB/TrEMBL
  ENSSSCT00000096975.1 UniProtKB/TrEMBL
  ENSSSCT00000098881.1 UniProtKB/TrEMBL
  ENSSSCT00000102420.1 UniProtKB/TrEMBL
  ENSSSCT00000102457 ENTREZGENE
  ENSSSCT00000102457.1 UniProtKB/TrEMBL
  ENSSSCT00000102553.1 UniProtKB/TrEMBL
  ENSSSCT00000104450.1 UniProtKB/TrEMBL
  ENSSSCT00000106847.1 UniProtKB/TrEMBL
  ENSSSCT00030089094.1 UniProtKB/TrEMBL
  ENSSSCT00030089205.1 UniProtKB/TrEMBL
  ENSSSCT00040104101.1 UniProtKB/TrEMBL
  ENSSSCT00040104144.1 UniProtKB/TrEMBL
  ENSSSCT00060033200.1 UniProtKB/TrEMBL
  ENSSSCT00060033216.1 UniProtKB/TrEMBL
  ENSSSCT00070010123.1 UniProtKB/TrEMBL
  ENSSSCT00070010225.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
InterPro Ion_trans_dom UniProtKB/TrEMBL
  VDCC_alpha-1_subunit UniProtKB/TrEMBL
  VDCC_T_a1 UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene CACNA1H ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT T-TYPE CALCIUM CHANNEL SUBUNIT ALPHA-1H UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/TrEMBL
PRINTS TVDCCALPHA1 UniProtKB/TrEMBL
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A286ZIL7_PIG UniProtKB/TrEMBL
  A0A287B1I7_PIG UniProtKB/TrEMBL
  A0A480VZD3 ENTREZGENE, UniProtKB/TrEMBL
  A0A480XM52 ENTREZGENE, UniProtKB/TrEMBL
  A0A480XTJ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T0X7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T0Y3_PIG UniProtKB/TrEMBL
  A0A8D0XQJ7_PIG UniProtKB/TrEMBL
  A0A8D0XS07_PIG UniProtKB/TrEMBL
  A0A8D1GD07 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1UTS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F6Z7_PIG UniProtKB/TrEMBL
  A0A8W4F9N5_PIG UniProtKB/TrEMBL
  A0A8W4FAE0_PIG UniProtKB/TrEMBL
  A0A8W4FC74_PIG UniProtKB/TrEMBL
  A0A8W4FD88_PIG UniProtKB/TrEMBL
  A0A8W4FHM3_PIG UniProtKB/TrEMBL
  A0A8W4FL94_PIG UniProtKB/TrEMBL
  A0A8W4FMI0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:97041 ENTREZGENE