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Gene: SLC22A4 (solute carrier family 22 member 4) Sus scrofa

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Symbol:

SLC22A4

Name:

solute carrier family 22 member 4

RGD ID:

14029613

Description:

ENCODES a protein that exhibits organic cation transmembrane transporter activity (ortholog); quaternary ammonium group transmembrane transporter activity (ortholog); INVOLVED IN carnitine metabolic process (ortholog); carnitine transport (ortholog); quaternary ammonium group transport (ortholog); PARTICIPATES IN cisplatin response pathway; ASSOCIATED WITH Coxsackievirus Infections (ortholog); Enterovirus Infections (ortholog); familial adenomatous polyposis 1 (ortholog); FOUND IN apical plasma membrane (inferred); basal plasma membrane (inferred); basolateral plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ergothioneine transporter; ETT; solute carrier family 22 (organic cation/ergothioneine transporter), member 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	134,595,584 - 134,639,777 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	134,594,843 - 134,641,403 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	139,999,122 - 140,061,471 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Coxsackievirus Infections (ISO)

Enterovirus Infections (ISO)

familial adenomatous polyposis 1 (ISO)

Hearing Loss (ISO)

Hereditary Neoplastic Syndromes (ISO)

myocarditis (ISO)

Neurodevelopmental Disorders (ISO)

rheumatoid arthritis (ISO)

systemic primary carnitine deficiency disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acetate ester transport (IEA)

amino acid import across plasma membrane (IEA)

carnitine metabolic process (IEA,ISO)

carnitine transmembrane transport (IEA)

carnitine transport (IEA,ISO)

monoatomic ion transport (IEA)

neurotransmitter transport (IEA)

quaternary ammonium group transport (IBA,IEA,ISO)

sodium ion transport (IEA)

transmembrane transport (IEA)

triglyceride metabolic process (IEA,ISO)

xenobiotic transport (IEA)

Cellular Component

apical plasma membrane (IEA)

basal plasma membrane (IEA)

basolateral plasma membrane (IEA)

membrane (IEA)

mitochondrial membrane (IEA)

mitochondrion (IEA)

Molecular Function

acetylcholine transmembrane transporter activity (IEA)

amino acid transmembrane transporter activity (IEA)

amino-acid betaine transmembrane transporter activity (IEA)

ATP binding (IEA)

carnitine transmembrane transporter activity (IEA)

organic cation transmembrane transporter activity (ISO)

PDZ domain binding (IEA)

protein binding (ISO)

quaternary ammonium group transmembrane transporter activity (IBA,IEA,ISO)

symporter activity (IEA)

transmembrane transporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

cisplatin response pathway (ISO)

References

Additional References at PubMed

PMID:22100842	PMID:22301074

Genomics

Comparative Map Data

SLC22A4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	134,595,584 - 134,639,777 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	134,594,843 - 134,641,403 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	139,999,122 - 140,061,471 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC22A4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	132,294,394 - 132,344,190 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	132,294,394 - 132,344,190 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	131,630,087 - 131,679,883 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	131,658,044 - 131,707,798 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	131,658,043 - 131,707,796	NCBI
Celera	5	127,760,255 - 127,809,972 (+)	NCBI		Celera
Cytogenetic Map	5	q31.1	NCBI
HuRef	5	126,822,406 - 126,872,150 (+)	NCBI		HuRef
CHM1_1	5	131,062,911 - 131,112,639 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	132,814,292 - 132,864,084 (+)	NCBI		T2T-CHM13v2.0

Slc22a4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	53,873,941 - 53,920,866 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	53,873,949 - 53,918,916 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	53,983,115 - 54,030,040 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	53,983,123 - 54,028,090 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	53,796,628 - 53,841,592 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	53,826,549 - 53,871,513 (-)	NCBI		MGSCv36	mm8
Celera	11	58,570,827 - 58,615,496 (-)	NCBI		Celera
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	32.07	NCBI

Slc22a4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	38,634,098 - 38,687,409 (-)	NCBI		GRCr8
mRatBN7.2	10	38,133,333 - 38,179,932 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	38,133,322 - 38,179,720 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	42,818,653 - 42,864,486 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	42,308,749 - 42,354,587 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	37,812,450 - 37,858,285 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	39,334,972 - 39,373,508 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	39,121,490 - 39,154,295 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	10	37,476,326 - 37,522,094 (-)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

Slc22a4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	3,671,772 - 3,737,612 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	3,671,772 - 3,737,946 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC22A4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	127,609,074 - 127,662,069 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	125,750,856 - 125,801,453 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	127,717,077 - 127,766,793 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	133,879,374 - 133,929,439 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	133,879,387 - 133,929,439 (+)	Ensembl	panpan1.1		panPan2

SLC22A4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	20,599,281 - 20,643,893 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	19,401,045 - 19,445,624 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	21,384,967 - 21,429,553 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	11	20,103,729 - 20,148,455 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	19,951,861 - 19,996,466 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	20,593,741 - 20,638,332 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101975630
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	115,822,961 - 115,872,218 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936647	2,825,814 - 2,874,774 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936647	2,825,814 - 2,874,786 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC22A4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	35,123,442 - 35,173,254 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	35,124,433 - 35,173,264 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	42,770,859 - 42,820,375 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc22a4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	39,698,456 - 39,808,718 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	39,740,026 - 39,809,265 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SLC22A4
1275 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system
9	4	20	1	4	13	12	20	3	4

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001145752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005661640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021077199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001307198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU372899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FN178491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01037339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000056409 ⟹ ENSSSCP00000041250

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	134,595,584 - 134,639,777 (+)	Ensembl

RefSeq Acc Id:

NM_001145752 ⟹ NP_001139224

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	134,595,786 - 134,639,366 (+)	NCBI

Sequence:

show sequence

ATGCGGGACTACGACGAGGTGACCGCCTTCCTGGGCAAGTGGGGGCCCTTCCAGCGCCTCATCT
TCTTCTTGCTCAGCGCCAGCATCATCCCCAACGGCTTCAACGGGATGTCAGTCGTGTTCCTGGC
GGGGACCCCGGAGCACCACTGCCGAGTGCCAGACACCGCGAACCTGAGCAGCGCTTGGCGCAAC
CACAGTCTCCCGCTGCGGCTGCAGGACGGCCGCGAGGTGCCTCACAGCTGCCGTCGCTACCGGC
TCGAGACGATTGTCAACTTGTCGGCGCTCGGGCTGGAGCCGGGGCGCGACGTGGACCTGGAGCA
GCTGGAGCAGGAGGACTGCCTGGATGGCTGGGAGTTCAGCCAGGACGTCTATTTGTCCACCATC
GTGACCGAGTGGAGCCTGGTGTGTGAGGATGATTGGAAGACGCCCCTCACCACCTCCCTGTTCT
TCATAGGTGTGCTCGTTGGCTCCTTTGTGTCCGGGCAGCTGTCAGACAGGTTTGGCAGGAAGAG
TATCCTCTTTGCAACCATGGCTATACAGACTGGCTTCAGCTTCCTGCAGATCTTTTCTATCAAC
TGGGAGATGTTCACCGTGTTATTTGTCATCGTTGGCATGGGCCAGATCTCCAACTATGTGGTGG
CCTTCATACTAGGAACAGAGATTCTTGGCAAGTCAGTTCGTATTATATTCTCTACGTTAGGAGT
GTGCACATTTTTTGCAGTTGGCTACATGCTGCTGCCACTGTTTGCTTACTTCATCAGAGACTGG
CGGATGCTGCTGCTGGCGCTGACGGTGCCGGGGGTGCTGTGCGTCCCGCTGTGGTGGTTTATTC
CTGAATCTCCCCGGTGGCTGATATCTCAGAGAAGATTTAGAGAGGCTGAAGAGATCATCCAAAG
AGCTGCAAAAATGAACAATGTAGCTGCCCCAGTGGTGATTTTTGATCCTGTGGAGGAGCTAAAC
CCCTTGAAACAGCAGAAAGTTTTCATTCTGGACCTGTTCAAGACTCGGAATATTGCCATAATAA
CCATTATGTTTTTGCTGCTATGGATGCTAACCTCAGTGGGTTACTTTGCTCTGTCTCTCAACAC
TCCTAATTTACATGGTGATGCCTACCTGAACTGTTTCTTCTCTGCCTTGGTTGAAGTTCCGGCT
TATGTTACAGCCTGGCTGCTACTTCGAACCCTGCCCAGGCGTTATGTCATAGCTGGAGTACTAC
TCTTGGGAGGAGGTGTGCTTCTCTTAATTCAATTGGTACCTGCAGATTACAACTTCTTGTCCAT
TGGTCTGGCCATGATAGGAAAATTCGGGATCACCTCTGCCTTCTCCATGCTGTATGTCTTCACT
GCAGAGCTCTACCCCACCCTGGTCAGGAACATGGCTGTGGGGCTCACATCTATGGCCTCCAGAA
TAGGCAGCATTGTTGCTCCCTACTTTGTTTACCTTGGTGCTTACAACAGAGTTCTGCCCTACAT
CCTCATGGGCAGCCTGACTGTCCTGATTGGAATCATCACCCTTTTTTTACCTGAAAGTTTTGGA
ATGACTCTACCAGAGACCTTAGGCCAGATGCAGAAAGTGAAAGGGTTCAGATCTGGGAAAAGAA
CAAAAGATTCAATGGAAAAAGAAGAAAGTCCCAAAGTGCTAATAACTTCATTCTGA

hide sequence

RefSeq Acc Id:

XM_005661640 ⟹ XP_005661697

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	134,595,526 - 134,639,855 (+)	NCBI

Sequence:

show sequence

CGCCCCGGCCGGGGTGGGGGTGTGGTCCTGAGTTTCTGCAAGGCTTCAGCTTTGCGTCCAGCTC
CAGGGAGTCTTCTAACGCCGGCTCCCCGTTTCCCGGGATCTGTCCCGGCCCCGCGCCCCACTTT
CCCTCAGCGTGCCTGGCCCGCGAGAACATTCTGACGCCCTCGGGGAACGCCCTCGACCGACCGC
GCAACACTGTCCGAGCAACGCTCTTTATTACCCCTTATTGCCACCTGCAGAGCAGCGGCAGAAA
GAGCATGCGGGACTACGACGAGGTGACCGCCTTCCTGGGCAAGTGGGGGCCCTTCCAGCGCCTC
ATCTTCTTCTTGCTCAGCGCCAGCATCATCCCCAACGGCTTCAACGGGATGTCAGTCGTGTTCC
TGGCGGGGACCCCGGAGCACCACTGCCGAGTGCCAGACACCGCGAACCTGAGCAGCGCTTGGCG
CAACCACAGTCTCCCGCTGCGGCTGCAGGACGGCCGCGAGGTGCCTCACAGCTGCCGTCGCTAC
CGGCTCGAGACGATTGTCAACTTGTCGGCGCTCGGGCTGGAGCCGGGGCGCGACGTGGACCTGG
AGCAGCTGGAGCAGGAGGACTGCCTGGATGGCTGGGAGTTCAGCCAGGACGTCTATTTGTCCAC
CATCGTGACCGAGTGGAGCCTGGTGTGTGAGGATGATTGGAAGACGCCCCTCACCACCTCCCTG
TTCTTCATAGGTGTGCTCGTTGGCTCCTTTGTGTCCGGGCAGCTGTCAGACAGGTTTGGCAGGA
AGAGTATCCTCTTTGCAACCATGGCTATACAGACTGGCTTCAGCTTCCTGCAGATCTTTTCTAT
CAACTGGGAGATGTTCACCGTGTTATTTGTCATCGTTGGCATGGGCCAGATCTCCAACTATGTG
GTGGCCTTCATACTAGGAACAGAGATTCTTGGCAAGTCAGTTCGTATTATATTCTCTACGTTAG
GAGTGTGCACATTTTTTGCAGTTGGCTACATGCTGCTGCCACTGTTTGCTTACTTCATCAGAGA
CTGGCGGATGCTGCTGCTGGCGCTGACGGTGCCGGGGGTGCTGTGCGTCCCGCTGTGGTGGTTT
ATTCCTGAATCTCCCCGGTGGCTGATATCTCAGAGAAGATTTAGAGAGGCTGAAGAGATCATCC
AAAGAGCTGCAAAAATGAACAATGTAGCTGCCCCAGTGGTGATTTTTGATCCTGTGGAGCAACA
GGAGCTAAACCCCTTGAAACAGCAGAAAGTTTTCATTCTGGACCTGTTCAAGACTCGGAATATT
GCCATAATAACCATTATGTTTTTGCTGCTATGGATGCTAACCTCAGTGGGTTACTTTGCTCTGT
CTCTCAACACTCCTAATTTACATGGTGATGCCTACCTGAACTGTTTCTTCTCTGCCTTGGTTGA
AGTTCCGGCTTATGTTACAGCCTGGCTGCTACTTCGAACCCTGCCCAGGCGTTATGTCATAGCT
GGAGTACTACTCTTGGGAGGAGGTGTGCTTCTCTTAATTCAATTGGTACCTGCAGATTACAACT
TCTTGTCCATTGGTCTGGCCATGATAGGAAAATTCGGGATCACCTCTGCCTTCTCCATGCTGTA
TGTCTTCACTGCAGAGCTCTACCCCACCCTGGTCAGGAACATGGCTGTGGGGCTCACATCTATG
GCCTCCAGAATAGGCAGCATTGTTGCTCCCTACTTTGTTTACCTTGGTGCTTACAACAGAGTTC
TGCCCTACATCCTCATGGGCAGCCTGACTGTCCTGATTGGAATCATCACCCTTTTTTTACCTGA
AAGTTTTGGAATGACTCTACCAGAGACCTTAGGCCAGATGCAGAAAGTGAAAGGGTTCAGATCT
GGGAAAAGAACAAAAGATTCAATGGAAAAAGAAGAAAGTCCCAAAGTGCTAATAACTTCATTCT
GATAAAATTTCCACCTTATCTGGTGAACTGAAAAACAGACCCATTAGACTACGAAGAAACTAAA
GCCTTTCCCGCTGAAAGGGACTCACTGTAAGGATTAACGCTAAAATGGACCTTGCTATGAAGTG
CTTATCATACAGCAAACTTGGGGTGACTCTTCCAGATAAGCTCCTTAGTTGACAAAACAAACCA
TTTATAGAGAGTCTTTCATATGAATTAATTTGTAAGAATTTTTGAAAATGTGTTGGTCAAGGAT
TGGTAAATCCATACAAAGATTAACACTCATCTCAAAATATAAATACTATCCACATTTTAAAAAT
ATCATTGTATTAACACAACTATCAGGTGGCAACATGTGCCATATGTGTGTGTGTGTGTGTGTGT
GTGTATAAGTGAACCAGCACATTCAAAATTTACAATAGTTTTTGTTTTTTTGTTTTTTGTTTTG
TTTTTTATGTCTTTTCTATGGCCTCACCTGCAGCATATGGAGA

hide sequence

RefSeq Acc Id:

XM_021077199 ⟹ XP_020932858

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	134,594,843 - 134,639,855 (+)	NCBI

Sequence:

show sequence

CCAGCTCCTCTTGGTCACAGCTTATCACTGACGCAGTGTGGCCTTGTTCATCCCTTCTGGGCTC
TGAGCCTGTTCCCCCTTTCCAAGAGCAGCGGCAGAAAGAGCATGCGGGACTACGACGAGGTGAC
CGCCTTCCTGGGCAAGTGGGGGCCCTTCCAGCGCCTCATCTTCTTCTTGCTCAGCGCCAGCATC
ATCCCCAACGGCTTCAACGGGATGTCAGTCGTGTTCCTGGCGGGGACCCCGGAGCACCACTGCC
GAGTGCCAGACACCGCGAACCTGAGCAGCGCTTGGCGCAACCACAGTCTCCCGCTGCGGCTGCA
GGACGGCCGCGAGGTGCCTCACAGCTGCCGTCGCTACCGGCTCGAGACGATTGTCAACTTGTCG
GCGCTCGGGCTGGAGCCGGGGCGCGACGTGGACCTGGAGCAGCTGGAGCAGGAGGACTGCCTGG
ATGGCTGGGAGTTCAGCCAGGACGTCTATTTGTCCACCATCGTGACCGAGTGGAGCCTGGTGTG
TGAGGATGATTGGAAGACGCCCCTCACCACCTCCCTGTTCTTCATAGGTGTGCTCGTTGGCTCC
TTTGTGTCCGGGCAGCTGTCAGACAGGTTTGGCAGGAAGAGTATCCTCTTTGCAACCATGGCTA
TACAGACTGGCTTCAGCTTCCTGCAGATCTTTTCTATCAACTGGGAGATGTTCACCGTGTTATT
TGTCATCGTTGGCATGGGCCAGATCTCCAACTATGTGGTGGCCTTCATACTAGGAACAGAGATT
CTTGGCAAGTCAGTTCGTATTATATTCTCTACGTTAGGAGTGTGCACATTTTTTGCAGTTGGCT
ACATGCTGCTGCCACTGTTTGCTTACTTCATCAGAGACTGGCGGATGCTGCTGCTGGCGCTGAC
GGTGCCGGGGGTGCTGTGCGTCCCGCTGTGGTGGTTTATTCCTGAATCTCCCCGGTGGCTGATA
TCTCAGAGAAGATTTAGAGAGGCTGAAGAGATCATCCAAAGAGCTGCAAAAATGAACAATGTAG
CTGCCCCAGTGGTGATTTTTGATCCTGTGGAGCAACAGGAGCTAAACCCCTTGAAACAGCAGAA
AGTTTTCATTCTGGACCTGTTCAAGACTCGGAATATTGCCATAATAACCATTATGTTTTTGCTG
CTATGGATGCTAACCTCAGTGGGTTACTTTGCTCTGTCTCTCAACACTCCTAATTTACATGGTG
ATGCCTACCTGAACTGTTTCTTCTCTGCCTTGGTTGAAGTTCCGGCTTATGTTACAGCCTGGCT
GCTACTTCGAACCCTGCCCAGGCGTTATGTCATAGCTGGAGTACTACTCTTGGGAGGAGGTGTG
CTTCTCTTAATTCAATTGGTACCTGCAGATTACAACTTCTTGTCCATTGGTCTGGCCATGATAG
GAAAATTCGGGATCACCTCTGCCTTCTCCATGCTGTATGTCTTCACTGCAGAGCTCTACCCCAC
CCTGGTCAGGAACATGGCTGTGGGGCTCACATCTATGGCCTCCAGAATAGGCAGCATTGTTGCT
CCCTACTTTGTTTACCTTGGTGCTTACAACAGAGTTCTGCCCTACATCCTCATGGGCAGCCTGA
CTGTCCTGATTGGAATCATCACCCTTTTTTTACCTGAAAGTTTTGGAATGACTCTACCAGAGAC
CTTAGGCCAGATGCAGAAAGTGAAAGGGTTCAGATCTGGGAAAAGAACAAAAGATTCAATGGAA
AAAGAAGAAAGTCCCAAAGTGCTAATAACTTCATTCTGATAAAATTTCCACCTTATCTGGTGAA
CTGAAAAACAGACCCATTAGACTACGAAGAAACTAAAGCCTTTCCCGCTGAAAGGGACTCACTG
TAAGGATTAACGCTAAAATGGACCTTGCTATGAAGTGCTTATCATACAGCAAACTTGGGGTGAC
TCTTCCAGATAAGCTCCTTAGTTGACAAAACAAACCATTTATAGAGAGTCTTTCATATGAATTA
ATTTGTAAGAATTTTTGAAAATGTGTTGGTCAAGGATTGGTAAATCCATACAAAGATTAACACT
CATCTCAAAATATAAATACTATCCACATTTTAAAAATATCATTGTATTAACACAACTATCAGGT
GGCAACATGTGCCATATGTGTGTGTGTGTGTGTGTGTGTGTATAAGTGAACCAGCACATTCAAA
ATTTACAATAGTTTTTGTTTTTTTGTTTTTTGTTTTGTTTTTTATGTCTTTTCTATGGCCTCAC
CTGCAGCATATGGAGA

hide sequence

RefSeq Acc Id:

XR_001307198

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	134,595,526 - 134,641,403 (+)	NCBI

Sequence:

show sequence

CGCCCCGGCCGGGGTGGGGGTGTGGTCCTGAGTTTCTGCAAGGCTTCAGCTTTGCGTCCAGCTC
CAGGGAGTCTTCTAACGCCGGCTCCCCGTTTCCCGGGATCTGTCCCGGCCCCGCGCCCCACTTT
CCCTCAGCGTGCCTGGCCCGCGAGAACATTCTGACGCCCTCGGGGAACGCCCTCGACCGACCGC
GCAACACTGTCCGAGCAACGCTCTTTATTACCCCTTATTGCCACCTGCAGAGCAGCGGCAGAAA
GAGCATGCGGGACTACGACGAGGTGACCGCCTTCCTGGGCAAGTGGGGGCCCTTCCAGCGCCTC
ATCTTCTTCTTGCTCAGCGCCAGCATCATCCCCAACGGCTTCAACGGGATGTCAGTCGTGTTCC
TGGCGGGGACCCCGGAGCACCACTGCCGAGTGCCAGACACCGCGAACCTGAGCAGCGCTTGGCG
CAACCACAGTCTCCCGCTGCGGCTGCAGGACGGCCGCGAGGTGCCTCACAGCTGCCGTCGCTAC
CGGCTCGAGACGATTGTCAACTTGTCGGCGCTCGGGCTGGAGCCGGGGCGCGACGTGGACCTGG
AGCAGCTGGAGCAGGAGGACTGCCTGGATGGCTGGGAGTTCAGCCAGGACGTCTATTTGTCCAC
CATCGTGACCGAGTGGAGCCTGGTGTGTGAGGATGATTGGAAGACGCCCCTCACCACCTCCCTG
TTCTTCATAGGTGTGCTCGTTGGCTCCTTTGTGTCCGGGCAGCTGTCAGACAGGTTTGGCAGGA
AGAGTATCCTCTTTGCAACCATGGCTATACAGACTGGCTTCAGCTTCCTGCAGATCTTTTCTAT
CAACTGGGAGATGTTCACCGTGTTATTTGTCATCGTTGGCATGGGCCAGATCTCCAACTATGTG
GTGGCCTTCATACTAGGAACAGAGATTCTTGGCAAGTCAGTTCGTATTATATTCTCTACGTTAG
GAGTGTGCACATTTTTTGCAGTTGGCTACATGCTGCTGCCACTGTTTGCTTACTTCATCAGAGA
CTGGCGGATGCTGCTGCTGGCGCTGACGGTGCCGGGGGTGCTGTGCGTCCCGCTGTGGTGGTTT
ATTCCTGAATCTCCCCGGTGGCTGATATCTCAGAGAAGATTTAGAGAGGCTGAAGAGATCATCC
AAAGAGCTGCAAAAATGAACAATGTAGCTGCCCCAGTGGTGATTTTTGATCCTGTGGAGCAACA
GGAGCTAAACCCCTTGAAACAGCAGAAAGTTTTCATTCTGGACCTGTTCAAGACTCGGAATATT
GCCATAATAACCATTATGTTTTTGCTGCTATGGATGCTAACCTCAGTGGGTTACTTTGCTCTGT
CTCTCAACACTCCTAATTTACATGGTGATGCCTACCTGAACTGTTTCTTCTCTGCCTTGGTTGA
AGTTCCGGCTTATGTTACAGCCTGGCTGCTACTTCGAACCCTGCCCAGGCGTTATGTCATAGCT
GGAGTACTACTCTTGGGAGGAGGTGTGCTTCTCTTAATTCAATTGGTACCTGCAGATTACAACT
TCTTGTCCATTGGTCTGGCCATGATAGGAAAATTCGGGATCACCTCTGCCTTCTCCATGCTGTA
TGTCTTCACTGCAGAGCTCTACCCCACCCTGGTCAGGAACATGGCTGTGGGGCTCACATCTATG
GCCTCCAGAATAGGCAGCATTGTTGCTCCCTACTTTGTTTACCTTGGTGCTTACAACAGAGTTC
TGCCCTACATCCTCATGGGCAGCCTGACTGTCCTGATTGGAATCATCACCCTTTTTTTACCTGA
AAGTTTTGGAATGACTCTACCAGAGACCTTAGGCCAGATGCAGAAAGTGAAAGGGTTCAGATCT
GGGAAAAGAACAAAAGATTCAATGGAAAAAGAAGAAAGTCCCAAAGTGCTAATAACTTCATTCT
GATAAAATTTCCACCTTATCTGGTGAACTGAAAAACAGACCCATTAGACTACGAAGAAACTAAA
GCCTTTCCCGCTGAAAGGGACTCACTGCACGCTGGGATGATGACATAGCAAGAAGTTCCTCCCA
GAGACCTGAGCAGCATGCTTCCGCCAACAGCAGCTTCTGTGGGAGCAGCATGGTGACAAGCTAC
CGACCCTTTAACACATCCAGCATGACAGTGCATATGTAGAATAGGTAGCCATTGGGCTACTGGT
TTTTATTTTTTTATTTATTATTATTTATTTTATTTT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001139224	(Get FASTA)	NCBI Sequence Viewer
	XP_005661697	(Get FASTA)	NCBI Sequence Viewer
	XP_020932858	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAX48987	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000041250
	ENSSSCP00000041250.1
	ENSSSCP00015016725.1
	ENSSSCP00025037790.1
	ENSSSCP00030037142.1
	ENSSSCP00035018700.1
	ENSSSCP00040016621.1
	ENSSSCP00045014112.1
	ENSSSCP00055004325.1
	ENSSSCP00060029579.1
	ENSSSCP00065006767.1
	ENSSSCP00070032017.1
	ENSSSCP00070032030.1

RefSeq Acc Id:	XP_020932858 ⟸ XM_021077199
- Peptide Label:	isoform X1
- UniProtKB:	A0A287ABQ9 (UniProtKB/TrEMBL), A0A4X1URG8 (UniProtKB/TrEMBL), A0A8D0U127 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRDYDEVTAFLGKWGPFQRLIFFLLSASIIPNGFNGMSVVFLAGTPEHHCRVPDTANLSSAWRN HSLPLRLQDGREVPHSCRRYRLETIVNLSALGLEPGRDVDLEQLEQEDCLDGWEFSQDVYLSTI VTEWSLVCEDDWKTPLTTSLFFIGVLVGSFVSGQLSDRFGRKSILFATMAIQTGFSFLQIFSIN WEMFTVLFVIVGMGQISNYVVAFILGTEILGKSVRIIFSTLGVCTFFAVGYMLLPLFAYFIRDW RMLLLALTVPGVLCVPLWWFIPESPRWLISQRRFREAEEIIQRAAKMNNVAAPVVIFDPVEQQE LNPLKQQKVFILDLFKTRNIAIITIMFLLLWMLTSVGYFALSLNTPNLHGDAYLNCFFSALVEV PAYVTAWLLLRTLPRRYVIAGVLLLGGGVLLLIQLVPADYNFLSIGLAMIGKFGITSAFSMLYV FTAELYPTLVRNMAVGLTSMASRIGSIVAPYFVYLGAYNRVLPYILMGSLTVLIGIITLFLPES FGMTLPETLGQMQKVKGFRSGKRTKDSMEKEESPKVLITSF hide sequence

RefSeq Acc Id:	XP_005661697 ⟸ XM_005661640
- Peptide Label:	isoform X1
- UniProtKB:	A0A287ABQ9 (UniProtKB/TrEMBL), A0A4X1URG8 (UniProtKB/TrEMBL), A0A8D0U127 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRDYDEVTAFLGKWGPFQRLIFFLLSASIIPNGFNGMSVVFLAGTPEHHCRVPDTANLSSAWRN HSLPLRLQDGREVPHSCRRYRLETIVNLSALGLEPGRDVDLEQLEQEDCLDGWEFSQDVYLSTI VTEWSLVCEDDWKTPLTTSLFFIGVLVGSFVSGQLSDRFGRKSILFATMAIQTGFSFLQIFSIN WEMFTVLFVIVGMGQISNYVVAFILGTEILGKSVRIIFSTLGVCTFFAVGYMLLPLFAYFIRDW RMLLLALTVPGVLCVPLWWFIPESPRWLISQRRFREAEEIIQRAAKMNNVAAPVVIFDPVEQQE LNPLKQQKVFILDLFKTRNIAIITIMFLLLWMLTSVGYFALSLNTPNLHGDAYLNCFFSALVEV PAYVTAWLLLRTLPRRYVIAGVLLLGGGVLLLIQLVPADYNFLSIGLAMIGKFGITSAFSMLYV FTAELYPTLVRNMAVGLTSMASRIGSIVAPYFVYLGAYNRVLPYILMGSLTVLIGIITLFLPES FGMTLPETLGQMQKVKGFRSGKRTKDSMEKEESPKVLITSF hide sequence

RefSeq Acc Id:

NP_001139224 ⟸ NM_001145752

- UniProtKB:

C0MP43 (UniProtKB/TrEMBL), A0A8D0U127 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRDYDEVTAFLGKWGPFQRLIFFLLSASIIPNGFNGMSVVFLAGTPEHHCRVPDTANLSSAWRN
HSLPLRLQDGREVPHSCRRYRLETIVNLSALGLEPGRDVDLEQLEQEDCLDGWEFSQDVYLSTI
VTEWSLVCEDDWKTPLTTSLFFIGVLVGSFVSGQLSDRFGRKSILFATMAIQTGFSFLQIFSIN
WEMFTVLFVIVGMGQISNYVVAFILGTEILGKSVRIIFSTLGVCTFFAVGYMLLPLFAYFIRDW
RMLLLALTVPGVLCVPLWWFIPESPRWLISQRRFREAEEIIQRAAKMNNVAAPVVIFDPVEELN
PLKQQKVFILDLFKTRNIAIITIMFLLLWMLTSVGYFALSLNTPNLHGDAYLNCFFSALVEVPA
YVTAWLLLRTLPRRYVIAGVLLLGGGVLLLIQLVPADYNFLSIGLAMIGKFGITSAFSMLYVFT
AELYPTLVRNMAVGLTSMASRIGSIVAPYFVYLGAYNRVLPYILMGSLTVLIGIITLFLPESFG
MTLPETLGQMQKVKGFRSGKRTKDSMEKEESPKVLITSF

hide sequence

Ensembl Acc Id:

ENSSSCP00000041250 ⟸ ENSSSCT00000056409

Protein Domains

Major facilitator superfamily (MFS) profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000014275	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015031872	UniProtKB/TrEMBL
	ENSSSCG00025063352	UniProtKB/TrEMBL
	ENSSSCG00030058048	UniProtKB/TrEMBL
	ENSSSCG00035035303	UniProtKB/TrEMBL
	ENSSSCG00040029513	UniProtKB/TrEMBL
	ENSSSCG00045012098	UniProtKB/TrEMBL
	ENSSSCG00055002909	UniProtKB/TrEMBL
	ENSSSCG00060050587	UniProtKB/TrEMBL
	ENSSSCG00065012402	UniProtKB/TrEMBL
	ENSSSCG00070019338	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000056409	ENTREZGENE
	ENSSSCT00000056409.3	UniProtKB/TrEMBL
	ENSSSCT00015042315.1	UniProtKB/TrEMBL
	ENSSSCT00025086775.1	UniProtKB/TrEMBL
	ENSSSCT00030080997.1	UniProtKB/TrEMBL
	ENSSSCT00035046780.1	UniProtKB/TrEMBL
	ENSSSCT00040039681.1	UniProtKB/TrEMBL
	ENSSSCT00045020536.1	UniProtKB/TrEMBL
	ENSSSCT00055005581.1	UniProtKB/TrEMBL
	ENSSSCT00060068794.1	UniProtKB/TrEMBL
	ENSSSCT00065016549.1	UniProtKB/TrEMBL
	ENSSSCT00070038255.1	UniProtKB/TrEMBL
	ENSSSCT00070038269.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1250.20	UniProtKB/TrEMBL
InterPro	MFS_dom	UniProtKB/TrEMBL
	MFS_sugar_transport-like	UniProtKB/TrEMBL
	MFS_trans_sf	UniProtKB/TrEMBL
	Orgcat_transp/SVOP	UniProtKB/TrEMBL
	S22A4/5	UniProtKB/TrEMBL
	Sugar_transporter_CS	UniProtKB/TrEMBL
KEGG Report	ssc:100271724	UniProtKB/TrEMBL
NCBI Gene	SLC22A4	ENTREZGENE
PANTHER	SOLUTE CARRIER FAMILY 22 MEMBER	UniProtKB/TrEMBL
	SOLUTE CARRIER FAMILY 22 MEMBER 4	UniProtKB/TrEMBL
Pfam	Sugar_tr	UniProtKB/TrEMBL
PROSITE	MFS	UniProtKB/TrEMBL
	SUGAR_TRANSPORT_1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF103473	UniProtKB/TrEMBL
UniProt	A0A287ABQ9	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1URG8	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1UTM9_PIG	UniProtKB/TrEMBL
	A0A8D0U127	ENTREZGENE, UniProtKB/TrEMBL
	C0MP43	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:92981	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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