Advanced Search (OLGA)

Gene: VCAM1 (vascular cell adhesion molecule 1) Sus scrofa

Analyze

Symbol:

VCAM1

Name:

vascular cell adhesion molecule 1

RGD ID:

14007778

Description:

ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN cardiac neuron differentiation (ortholog); cell adhesion (ortholog); cell chemotaxis (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); Anaphylaxis (ortholog); anemia (ortholog); FOUND IN apical plasma membrane (ortholog); cell periphery (ortholog); cell surface (ortholog); INTERACTS WITH (-)-epigallocatechin 3-gallate; 1,3-thiazolidine-2,4-dione; 3,3',4,4',5-pentachlorobiphenyl

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

vascular cell adhesion protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	117,496,920 - 117,511,222 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	117,496,914 - 117,511,211 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	129,040,268 - 129,054,581 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Albuminuria (ISO)

Anaphylaxis (ISO)

anemia (ISO)

anti-basement membrane glomerulonephritis (ISO)

aortic disease (ISO)

arteriosclerosis (ISO)

atherosclerosis (ISO)

cardiovascular system disease (ISO)

carotid artery disease (ISO)

carotid stenosis (ISO)

cholestasis (ISO)

Chronic Intermittent Hypoxia (ISO)

chronic kidney disease (ISO)

colitis (ISO)

dermatitis (ISO)

Diabetic Nephropathies (ISO)

diabetic neuropathy (ISO)

diabetic retinopathy (ISO)

Diaphragmatic Hernia (ISO)

Endotoxemia (ISO)

essential thrombocythemia (ISO)

Experimental Autoimmune Encephalomyelitis (ISO)

Experimental Diabetes Mellitus (ISO)

familial hyperlipidemia (ISO)

gastrointestinal system disease (ISO)

glomerulonephritis (ISO)

hepatocellular carcinoma (ISO)

Hypercholesterolemia (ISO)

hypertension (ISO)

Insulin Resistance (ISO)

interstitial cystitis (ISO)

intrahepatic cholestasis of pregnancy (ISO)

Kidney Reperfusion Injury (ISO)

Left Ventricular Hypertrophy (ISO)

liver cirrhosis (ISO)

lupus nephritis (ISO)

Lymphocytic Myocarditis (ISO)

maple syrup urine disease (ISO)

Metabolic Syndrome (ISO)

multiple sclerosis (ISO)

Myocardial Ischemia (ISO)

Myocardial Reperfusion Injury (ISO)

Neoplasm Metastasis (ISO)

obesity (ISO)

pancreatic cancer (ISO)

pancreatitis (ISO)

periodontitis (ISO)

Pregnancy in Diabetics (ISO)

Primary Graft Dysfunction (ISO)

pulmonary embolism (ISO)

pulmonary hypertension (ISO)

Reperfusion Injury (ISO)

rheumatic myocarditis (ISO)

sickle cell anemia (ISO)

Stroke (ISO)

systemic lupus erythematosus (ISO)

thromboangiitis obliterans (ISO)

type 1 diabetes mellitus (ISO)

type 2 diabetes mellitus (ISO)

ulcerative colitis (ISO)

uremia (ISO)

urticaria (ISO)

Venous Thrombosis (ISO)

Vitamin A Deficiency (ISO)

Vitamin D Deficiency (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (EXP)

1,3-thiazolidine-2,4-dione (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,3',4,4'-tetrachlorobiphenyl (EXP)

alpha-linolenic acid (EXP)

aluminium oxide (EXP)

anthra[1,9-cd]pyrazol-6(2H)-one (EXP)

apocynin (EXP)

bis(2-chloroethyl) sulfide (EXP)

deoxynivalenol (EXP)

linoleic acid (EXP)

LY294002 (EXP)

N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (EXP)

phorbol 13-acetate 12-myristate (EXP)

quercetin (EXP)

SB 203580 (EXP)

sirolimus (EXP)

titanium dioxide (EXP)

zinc atom (EXP)

zinc(0) (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

amine metabolic process (IEA)

cardiac neuron differentiation (ISO)

cell adhesion (IBA,IEA,ISO)

cell chemotaxis (ISO)

cell-cell adhesion (IEA)

cell-cell adhesion mediated by integrin (IEA)

cell-matrix adhesion (IEA)

cellular response to amyloid-beta (IEA)

cellular response to glucose stimulus (ISO)

cellular response to tumor necrosis factor (ISO)

cellular response to vascular endothelial growth factor stimulus (ISO)

chorio-allantoic fusion (ISO)

chronic inflammatory response (ISO)

embryonic placenta morphogenesis (ISO)

heart development (ISO)

heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (IEA,ISO)

heterotypic cell-cell adhesion (IEA)

inflammatory response (IEA)

innervation (ISO)

leukocyte cell-cell adhesion (IEA,ISO)

leukocyte tethering or rolling (IEA)

membrane to membrane docking (IEA)

positive regulation of T cell proliferation (IEA)

response to ethanol (ISO)

response to hypoxia (ISO)

response to ionizing radiation (ISO)

response to lipopolysaccharide (ISO)

response to nicotine (ISO)

response to nutrient (ISO)

response to zinc ion (ISO)

Cellular Component

alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex (IEA)

apical part of cell (IEA)

apical plasma membrane (ISO)

cell periphery (ISO)

cell surface (IEA,ISO)

early endosome (IEA)

endoplasmic reticulum (IEA)

external side of plasma membrane (IEA)

extracellular space (IEA,ISO)

filopodium (IEA)

Golgi apparatus (IEA)

membrane (IEA)

microvillus (IEA)

plasma membrane (IBA,IEA)

podosome (IEA)

sarcolemma (ISO)

Molecular Function

cell adhesion mediator activity (IEA)

cell adhesion molecule binding (IEA)

integrin binding (IBA,IEA,ISO)

primary methylamine oxidase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

eicosanoid signaling pathway (ISO)

References

Additional References at PubMed

PMID:7516159	PMID:8525525	PMID:14681463	PMID:18312487	PMID:19023092	PMID:21471537	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

VCAM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	117,496,920 - 117,511,222 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	117,496,914 - 117,511,211 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	129,040,268 - 129,054,581 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VCAM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	100,719,742 - 100,739,045 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	100,719,742 - 100,739,045 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	101,185,298 - 101,204,601 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	100,957,885 - 100,977,189 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	100,897,317 - 100,916,620	NCBI
Celera	1	99,446,448 - 99,465,752 (+)	NCBI		Celera
Cytogenetic Map	1	p21.2	NCBI
HuRef	1	99,309,886 - 99,329,291 (+)	NCBI		HuRef
CHM1_1	1	101,301,307 - 101,320,707 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	100,568,139 - 100,587,438 (+)	NCBI		T2T-CHM13v2.0

Vcam1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	115,903,669 - 115,923,337 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	115,903,598 - 115,923,337 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	116,110,020 - 116,129,688 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	116,109,949 - 116,129,688 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	115,812,938 - 115,832,606 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	116,102,024 - 116,121,692 (-)	NCBI		MGSCv36	mm8
Celera	3	122,538,966 - 122,558,635 (-)	NCBI		Celera
Cytogenetic Map	3	G1	NCBI
cM Map	3	50.17	NCBI

Vcam1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	206,723,050 - 206,742,783 (-)	NCBI		GRCr8
mRatBN7.2	2	204,038,120 - 204,057,852 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	204,038,114 - 204,057,958 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	211,702,572 - 211,722,182 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	209,587,221 - 209,606,807 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	204,404,257 - 204,423,843 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	219,071,193 - 219,090,931 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	219,071,193 - 219,097,619 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	237,158,192 - 237,177,779 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	212,277,654 - 212,297,376 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	212,240,407 - 212,260,130 (-)	NCBI
Celera	2	196,537,457 - 196,557,044 (-)	NCBI		Celera
RH 3.4 Map	2	1480.6	RGD
Cytogenetic Map	2	q42	NCBI

Vcam1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	5,390,751 - 5,411,691 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	5,390,745 - 5,410,025 (+)	NCBI	ChiLan1.0	ChiLan1.0

VCAM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	126,290,653 - 126,308,353 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	125,448,807 - 125,466,124 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	103,377,815 - 103,395,118 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	102,091,121 - 102,108,494 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	102,091,336 - 102,107,732 (+)	Ensembl	panpan1.1		panPan2

VCAM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	49,341,669 - 49,359,841 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	49,342,151 - 49,359,933 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	52,013,558 - 52,031,171 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	49,686,812 - 49,704,968 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	49,686,818 - 49,705,286 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	49,380,130 - 49,397,749 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	49,359,940 - 49,377,559 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	49,789,615 - 49,807,229 (-)	NCBI		UU_Cfam_GSD_1.0

Vcam1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	110,980,297 - 110,997,141 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936748	785,455 - 803,048 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936748	785,491 - 802,791 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VCAM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	32,616,425 - 32,635,903 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	32,615,333 - 32,635,862 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	25,428,596 - 25,448,051 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vcam1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624857	3,606,431 - 3,627,063 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624857	3,606,573 - 3,625,991 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in VCAM1
598 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_213891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK235268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK391233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU467566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01064553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L43124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U08351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000007515 ⟹ ENSSSCP00000007316

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	117,496,920 - 117,511,222 (-)	Ensembl

RefSeq Acc Id:

NM_213891 ⟹ NP_999056

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	117,496,914 - 117,511,211 (-)	NCBI

Sequence:

show sequence

CTGGCTTTTGGAGCTCAAGACTCTTCCTGAGCACTTTCAGGGAGGACACAAAGAAGGGTTTTGG
AACCATTGTTTCCTCGTCACACAGCAACTTAAAATGCCGAGGAATATCGTCGTGATCTTTGGAG
CCTCAAATATACTTTGGATGGTGTTTGCCGTTTCTCAAAATGTTAAAGTCGAGATCTTCCCTGA
AGACAAAATGATTGCGCAGATTGGTGACTCCGCTTCCCTGACTTGCAGCGCACCGGACTGCGAG
TCCTCCCTGTCTTTCTCTTGGAGAACTCAGATAGACAGTCCTCTGAATGGAAAAGTGAAAACTA
ACGGGACCAGATCCACGCTGGTCATGAATCCCGTTAGTTTTGAGAATGAACACTCCTATCTGTG
CACAGTCTCCTGCGGGAATTTGAAAGGGGAAAGAGGAATCCAAGTGGAGATCTACTCTTTCCCC
AAGGACCCAGAGATTCACTGGAGTAGCCTTCCAGAAGTTGGGAAGCCAGTTACAGTCAGGTGTC
TGGTGCCTGACGTTTACCCGGTTGAAAAGTTGGAGATAGAATTACTGAAGGACAACCATTCCAT
GGTGTCCCAGAACTTTCTGGAGCTTATAGACATAAAGTCCAAGGAAACGAAGAGTTTGGAATTT
ACCTTTACTCCTACCGAAGAGGATATTGGGAAAGCTATTGTTTGTCAAGCTACATTAATCATTG
ATGGTCAGCCCTCAGTAAAGACAACACCAGAAAAAATGCAAGTCTACATCTCACCCAAGGACCC
AGTTATATCTGTGAATCCCTCCACAAGCCTACAAGAAGGTGACTCCATGATGATGACATGTACC
AGTGAAGGTCTACCAGCTCCACAGATTTCCTGGAGCAAGAAATTAGATAATGGAGATCAACAGC
TCCTTTCTGGGAATGCAACTCTCACTTTAATTGCTATGAGGATGGAAGATTCTGGAATTTACGT
GTGCGAGGGAGTTAATCCGGTTGGGACAAACAGAAAAGAGGTGGAATTAACTGTTCAAGTTGCT
CCCAGGGATACGACCATCTCCGTCAACCCCTCCTCCACCCTGGAGGAGGGCAGTTCTGTGAACA
TGACCTGCTCTAGTGATGGCTTTCCAGCTCCGAAAATCCTCTGGAGCAAGAAGCTGAGGGATGG
GAATCTAGAGCCTCTTTCTGAGAATACAACTCTCACCTTGACATCTACAAAAATGGAAGATTCC
GGTATTTATGTGTGTGAAGGGATTAACCAGGCTGGAATAAACAGAAAAGAAGTTGAATTAATTA
TCCAAGCTGCTCCAAAAGATCTACAACTTACAGCTTTTCCTTCTGAGAGCGTCAAGGAAGGGGA
CACTGTCATTATCTCCTGTACATGTGGAAATGTCCCCCCGACTTTGATAATCCTGAAGAAAAAA
GCAGAGACAGGCGACACGGTGCTAAAGTCTACCGATGGTGCATATACCATCCACAGGGCCCGGC
TAGCGGATGCAGGTGTATACGAATGTGAATCCAAGAATGAAATTGGCTTGCAATTAAGAAGTAT
AACGCTTGACGTGAAAGGAAGAGAAAGTAACAAGGACTATTTTTCTTCTGAACTTCTCGTGCTC
TATTGTGCATCCTCCTTAATAATACCTGCCATCGGGGTGATTATTTACTTTGCTAGAAAAGCCA
ACATGAGAGGGTCATATAGTCTTGTAGACGCTCAAAAATCAAAAGTGTAGCTGATGTTTGAAGT
GTTCAACCAGAGACATTATTTATCAGTTCAAATCCTCAATACTGCTCATCATTCCACAAGGAAA
ACAACAAGCTGGGAGTCCAGACTTTGAATGCAGTGAACTCTTGGAAAGACATGGCTGCCTATGC
CCTTGCGGTGTGCACGAAGCCAAAGGAAAACGGCTTTCTCAAAAATAGGCACTACCCCTGAGAT
ATGGTGACTGGGGTGGTGTCATGAAGTGTATGTACAATAACGTGATTTGTATATATGTAAAATA
AAATTATGCCATAGGAAGATCGCCTGCAATATCAGCCCTCCATAGTCACATTTCTAAAATTATC
AGTGTTGCTTGGACTGATCGTTATAACTTAATGCATCTTAATATGACTGGCACTTTTTAATATT
TTATGTCATCTTTTTAATATTTTGTTACGACTTTTCAATATTTTATTTCCTTTAACAATATTTG
ATTCCTATAAAGGTCATGGACAACAATTTCATGTTTTGTAAAGATGCCAGGGTTTTAGATTGTT
ACAGGCAAATGATAAACCAAGAAAGAACTGGGTTGACTTTCAGGTACTAAGCACTTCAACCTAT
GGTGTAATGGTTGACTGGATTTCTCCGGATGGTACTGCCATGGTACGGAGTTTTTTTATGATGT
TGTTTGTTCATCAGACTCTTGTGTAACTTTCTCTATGTGGTCTAAAAGTACAACCTCTTTCGAT
TTTCTTTTGTAAATGTTTAGGGTTTTTTTTGTATAGTAAAGTGATAATTTCTGAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_999056	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA21542	(Get FASTA)	NCBI Sequence Viewer
	AAB59281	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000007316
	ENSSSCP00000007316.3
	ENSSSCP00015034400.1
	ENSSSCP00015034524.1
	ENSSSCP00025005903.1
	ENSSSCP00025005952.1
	ENSSSCP00030004084.1
	ENSSSCP00035003829.1
	ENSSSCP00035003830.1
	ENSSSCP00035003831.1
	ENSSSCP00040047155.1
	ENSSSCP00045007529.1
	ENSSSCP00050010230.1
	ENSSSCP00055009795.1
	ENSSSCP00060020447.1
	ENSSSCP00065009397.1
	ENSSSCP00070018196.1
	ENSSSCP00070018201.1
	ENSSSCP00070018208.1

RefSeq Acc Id:	NP_999056 ⟸ NM_213891
- Peptide Label:	precursor
- UniProtKB:	Q28939 (UniProtKB/TrEMBL), A0A8D0VDD4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSWRTQI DSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDPEIHWSSLP EVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLEFTFTPTEEDIGK AIVCQATLIIDGQPSVKTTPEKMQVYISPKDPVISVNPSTSLQEGDSMMMTCTSEGLPAPQISW SKKLDNGDQQLLSGNATLTLIAMRMEDSGIYVCEGVNPVGTNRKEVELTVQVAPRDTTISVNPS STLEEGSSVNMTCSSDGFPAPKILWSKKLRDGNLEPLSENTTLTLTSTKMEDSGIYVCEGINQA GINRKEVELIIQAAPKDLQLTAFPSESVKEGDTVIISCTCGNVPPTLIILKKKAETGDTVLKST DGAYTIHRARLADAGVYECESKNEIGLQLRSITLDVKGRESNKDYFSSELLVLYCASSLIIPAI GVIIYFARKANMRGSYSLVDAQKSKV hide sequence

Ensembl Acc Id:

ENSSSCP00000007316 ⟸ ENSSSCT00000007515

Protein Domains

Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000006862	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015063335	UniProtKB/TrEMBL
	ENSSSCG00025011482	UniProtKB/TrEMBL
	ENSSSCG00030007112	UniProtKB/TrEMBL
	ENSSSCG00035008969	UniProtKB/TrEMBL
	ENSSSCG00040074950	UniProtKB/TrEMBL
	ENSSSCG00045006623	UniProtKB/TrEMBL
	ENSSSCG00050017995	UniProtKB/TrEMBL
	ENSSSCG00055006422	UniProtKB/TrEMBL
	ENSSSCG00060035218	UniProtKB/TrEMBL
	ENSSSCG00065017384	UniProtKB/TrEMBL
	ENSSSCG00070011282	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000007515	ENTREZGENE
	ENSSSCT00000007515.6	UniProtKB/TrEMBL
	ENSSSCT00015084758.1	UniProtKB/TrEMBL
	ENSSSCT00015084997.1	UniProtKB/TrEMBL
	ENSSSCT00025015105.1	UniProtKB/TrEMBL
	ENSSSCT00025015202.1	UniProtKB/TrEMBL
	ENSSSCT00030009553.1	UniProtKB/TrEMBL
	ENSSSCT00035011227.1	UniProtKB/TrEMBL
	ENSSSCT00035011229.1	UniProtKB/TrEMBL
	ENSSSCT00035011231.1	UniProtKB/TrEMBL
	ENSSSCT00040103798.1	UniProtKB/TrEMBL
	ENSSSCT00045011035.1	UniProtKB/TrEMBL
	ENSSSCT00050024446.1	UniProtKB/TrEMBL
	ENSSSCT00055012433.1	UniProtKB/TrEMBL
	ENSSSCT00060047748.1	UniProtKB/TrEMBL
	ENSSSCT00065023106.1	UniProtKB/TrEMBL
	ENSSSCT00070021970.1	UniProtKB/TrEMBL
	ENSSSCT00070021975.1	UniProtKB/TrEMBL
	ENSSSCT00070021982.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	ICAM_VCAM	UniProtKB/TrEMBL
	ICAM_VCAM_N	UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_C2-set	UniProtKB/TrEMBL
	Ig_I-set	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	VCAM-1	UniProtKB/TrEMBL
KEGG Report	ssc:396925	UniProtKB/TrEMBL
NCBI Gene	VCAM1	ENTREZGENE
PANTHER	INTERCELLULAR ADHESION MOLECULE	UniProtKB/TrEMBL
	PTHR13771:SF14	UniProtKB/TrEMBL
Pfam	C2-set	UniProtKB/TrEMBL
	I-set	UniProtKB/TrEMBL
	Ig_3	UniProtKB/TrEMBL
PRINTS	ICAMVCAM1	UniProtKB/TrEMBL
	VCAM1	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
SMART	IGc2	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A4X1TMM2_PIG	UniProtKB/TrEMBL
	A0A4X1TMM9_PIG	UniProtKB/TrEMBL
	A0A4X1TMN3_PIG	UniProtKB/TrEMBL
	A0A8D0R022_PIG	UniProtKB/TrEMBL
	A0A8D0VDD4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0YL23_PIG	UniProtKB/TrEMBL
	A0A8D0YQ76_PIG	UniProtKB/TrEMBL
	A0A8D1KMU7_PIG	UniProtKB/TrEMBL
	A0A8D1PQ12_PIG	UniProtKB/TrEMBL
	F1S567_PIG	UniProtKB/TrEMBL
	Q28939	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:94811	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)