TRIM66 (tripartite motif containing 66) - Rat Genome Database

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Gene: TRIM66 (tripartite motif containing 66) Sus scrofa
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Symbol: TRIM66
Name: tripartite motif containing 66
RGD ID: 13996392
Description: ENCODES a protein that exhibits chromatin binding (inferred); identical protein binding (inferred); zinc ion binding (inferred); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); FOUND IN chromocenter (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tripartite motif-containing protein 66
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9738,551 - 764,472 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19711,571 - 769,799 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29904,459 - 936,367 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IBA)
chromocenter  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TRIM66
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9738,551 - 764,472 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19711,571 - 769,799 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29904,459 - 936,367 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM66
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38118,612,040 - 8,683,231 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl118,612,037 - 8,682,694 (-)EnsemblGRCh38hg38GRCh38
GRCh37118,633,587 - 8,704,778 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36118,593,069 - 8,650,397 (-)NCBINCBI36Build 36hg18NCBI36
Celera118,751,219 - 8,798,014 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef118,301,197 - 8,348,377 (-)NCBIHuRef
CHM1_1118,632,498 - 8,679,276 (-)NCBICHM1_1
T2T-CHM13v2.0118,693,787 - 8,764,985 (-)NCBIT2T-CHM13v2.0
Trim66
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397109,048,208 - 109,115,948 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7109,048,213 - 109,107,341 (-)EnsemblGRCm39 Ensembl
GRCm387109,449,001 - 109,516,759 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7109,449,006 - 109,508,134 (-)EnsemblGRCm38mm10GRCm38
MGSCv377116,592,515 - 116,651,648 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367109,240,180 - 109,284,915 (-)NCBIMGSCv36mm8
Celera7109,421,974 - 109,482,059 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.21NCBI
Trim66
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81172,903,771 - 172,974,475 (-)NCBIGRCr8
mRatBN7.21163,468,944 - 163,539,633 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,470,350 - 163,537,185 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1171,812,521 - 171,865,327 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01178,998,572 - 179,051,372 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01171,681,164 - 171,734,001 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01174,062,176 - 174,132,732 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1174,066,911 - 174,119,815 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01181,050,864 - 181,118,794 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41167,049,540 - 167,112,676 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1161,375,583 - 161,428,378 (-)NCBICelera
Cytogenetic Map1q33NCBI
Trim66
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541424,406,205 - 24,459,601 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541424,405,986 - 24,459,729 (-)NCBIChiLan1.0ChiLan1.0
TRIM66
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2911,042,863 - 11,113,387 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11110,996,886 - 11,048,218 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0118,739,892 - 8,807,121 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1118,482,889 - 8,549,669 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl118,485,319 - 8,519,067 (-)Ensemblpanpan1.1panPan2
TRIM66
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12132,037,874 - 32,097,362 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2132,044,841 - 32,097,357 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2131,605,638 - 31,665,919 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02132,910,669 - 32,970,942 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2132,918,427 - 32,965,302 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12132,179,916 - 32,240,153 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02132,348,328 - 32,406,280 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02132,642,146 - 32,699,825 (-)NCBIUU_Cfam_GSD_1.0
Trim66
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494753,315,008 - 53,374,719 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365289,358,950 - 9,529,842 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365289,358,976 - 9,410,425 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM66
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1156,118,792 - 56,180,748 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038153,814,800 - 153,872,013 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim66
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624766779,289 - 833,434 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624766772,565 - 833,372 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRIM66
2460 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000015917   ⟹   ENSSSCP00000015497
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9738,551 - 764,472 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000102980   ⟹   ENSSSCP00000075062
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9739,052 - 764,472 (+)Ensembl
RefSeq Acc Id: XM_021062260   ⟹   XP_020917919
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19711,571 - 769,799 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020917919 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000015497.5
  ENSSSCP00000075062.1
RefSeq Acc Id: XP_020917919   ⟸   XM_021062260
- Sequence:
Ensembl Acc Id: ENSSSCP00000015497   ⟸   ENSSSCT00000015917
Ensembl Acc Id: ENSSSCP00000075062   ⟸   ENSSSCT00000102980
Protein Domains
B box-type   Bromo   PHD-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014567 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015917.5 UniProtKB/TrEMBL
  ENSSSCT00000102980.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro Bbox_C UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Trim66 UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene TRIM66 ENTREZGENE
PANTHER PTHR45915:SF7 UniProtKB/TrEMBL
  TRANSCRIPTION INTERMEDIARY FACTOR UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
PROSITE BROMODOMAIN_2 UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART BBC UniProtKB/TrEMBL
  BBOX UniProtKB/TrEMBL
  BROMO UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  SSF47370 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
UniProt A0A8W4F9U3_PIG UniProtKB/TrEMBL
  F1RGC2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94426 ENTREZGENE