EXOC4 (exocyst complex component 4) - Rat Genome Database

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Gene: EXOC4 (exocyst complex component 4) Sus scrofa
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Symbol: EXOC4
Name: exocyst complex component 4
RGD ID: 13991240
Description: ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); PDZ domain binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); establishment of cell polarity (ortholog); Golgi to transport vesicle transport (ortholog); PARTICIPATES IN E-cadherin signaling pathway; insulin signaling pathway; ASSOCIATED WITH Meckel syndrome (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cell leading edge (ortholog); centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: exocyst complex component 4 tv1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1815,105,138 - 15,906,707 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11815,105,152 - 15,906,734 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21816,661,831 - 16,935,462 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EXOC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1815,105,138 - 15,906,707 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11815,105,152 - 15,906,734 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21816,661,831 - 16,935,462 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EXOC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387133,253,078 - 134,100,951 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7133,253,072 - 134,067,137 (+)EnsemblGRCh38hg38GRCh38
GRCh377132,937,834 - 133,750,514 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367132,588,363 - 133,401,054 (+)NCBINCBI36Build 36hg18NCBI36
Build 347132,395,083 - 133,207,766NCBI
Celera7127,689,360 - 128,501,714 (+)NCBICelera
Cytogenetic Map7q33NCBI
HuRef7127,253,094 - 128,065,500 (+)NCBIHuRef
CHM1_17132,872,749 - 133,685,075 (+)NCBICHM1_1
T2T-CHM13v2.07134,574,528 - 135,422,862 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27132,277,237 - 133,089,663 (+)NCBI
Exoc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39633,226,025 - 33,950,914 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl633,226,020 - 33,950,914 (+)EnsemblGRCm39 Ensembl
GRCm38633,249,090 - 33,973,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl633,249,085 - 33,973,979 (+)EnsemblGRCm38mm10GRCm38
MGSCv37633,199,150 - 33,922,943 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36633,179,308 - 33,903,101 (+)NCBIMGSCv36mm8
Celera633,234,875 - 33,967,226 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map614.59NCBI
Exoc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8462,774,896 - 63,551,541 (+)NCBIGRCr8
mRatBN7.2461,807,706 - 62,584,316 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl461,807,761 - 62,585,723 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx466,761,366 - 67,530,050 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0462,677,087 - 63,445,752 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0461,079,497 - 61,848,170 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0460,549,128 - 61,358,305 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl460,549,197 - 61,355,994 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0460,287,465 - 60,839,820 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0460,913,238 - 61,081,401 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4460,406,942 - 61,284,294 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1460,683,071 - 61,559,840 (+)NCBI
Celera456,882,713 - 57,637,636 (+)NCBICelera
Cytogenetic Map4q22NCBI
Exoc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541033,935,320 - 34,673,764 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541033,937,825 - 34,672,790 (-)NCBIChiLan1.0ChiLan1.0
EXOC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26170,083,599 - 170,888,092 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1722,093,854 - 22,898,347 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07125,226,107 - 126,030,486 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17137,734,349 - 138,537,446 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7137,734,400 - 138,536,214 (+)Ensemblpanpan1.1panPan2
EXOC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1143,334,286 - 4,077,478 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl143,334,220 - 4,077,411 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha142,990,436 - 3,736,256 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0143,063,572 - 3,812,726 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl143,063,572 - 3,812,695 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1143,267,885 - 4,015,200 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0143,012,296 - 3,761,501 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0143,158,194 - 3,902,305 (-)NCBIUU_Cfam_GSD_1.0
EXOC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121101,885,192 - 102,694,892 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666042666,279 - 1,487,617 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Exoc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247832,316,300 - 3,165,255 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247832,315,128 - 3,165,343 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EXOC4
32798 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000018013   ⟹   ENSSSCP00000017529
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1815,105,138 - 15,906,678 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000073550   ⟹   ENSSSCP00000066058
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1815,674,679 - 15,906,707 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000103125   ⟹   ENSSSCP00000078642
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1815,676,130 - 15,906,681 (-)Ensembl
RefSeq Acc Id: XM_021078821   ⟹   XP_020934480
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11815,105,152 - 15,906,734 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021078822   ⟹   XP_020934481
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11815,477,881 - 15,906,734 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020934480   ⟸   XM_021078821
- Peptide Label: isoform X1
- UniProtKB: A0A4X1VT96 (UniProtKB/TrEMBL),   M3UYX8 (UniProtKB/TrEMBL),   F1SNG6 (UniProtKB/TrEMBL),   A0A8D1S230 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020934481   ⟸   XM_021078822
- Peptide Label: isoform X2
- UniProtKB: A0A8W4FHC7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000066058   ⟸   ENSSSCT00000073550
Ensembl Acc Id: ENSSSCP00000017529   ⟸   ENSSSCT00000018013
Ensembl Acc Id: ENSSSCP00000078642   ⟸   ENSSSCT00000103125

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016543 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015007853 UniProtKB/TrEMBL
  ENSSSCG00025045901 UniProtKB/TrEMBL
  ENSSSCG00030057634 UniProtKB/TrEMBL
  ENSSSCG00035043351 UniProtKB/TrEMBL
  ENSSSCG00040045372 UniProtKB/TrEMBL
  ENSSSCG00050061452 UniProtKB/TrEMBL
  ENSSSCG00055028373 UniProtKB/TrEMBL
  ENSSSCG00060028949 UniProtKB/TrEMBL
  ENSSSCG00065012502 UniProtKB/TrEMBL
  ENSSSCG00070026394 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000073550 ENTREZGENE
  ENSSSCT00000073550.1 UniProtKB/TrEMBL
  ENSSSCT00000103125.1 UniProtKB/TrEMBL
  ENSSSCT00015010358.1 UniProtKB/TrEMBL
  ENSSSCT00025062367.1 UniProtKB/TrEMBL
  ENSSSCT00025062601.1 UniProtKB/TrEMBL
  ENSSSCT00030080394.1 UniProtKB/TrEMBL
  ENSSSCT00030080411.1 UniProtKB/TrEMBL
  ENSSSCT00030080433.1 UniProtKB/TrEMBL
  ENSSSCT00035057590.1 UniProtKB/TrEMBL
  ENSSSCT00035057602.1 UniProtKB/TrEMBL
  ENSSSCT00040060930.1 UniProtKB/TrEMBL
  ENSSSCT00040061137.1 UniProtKB/TrEMBL
  ENSSSCT00050083740.1 UniProtKB/TrEMBL
  ENSSSCT00050083749.1 UniProtKB/TrEMBL
  ENSSSCT00055056495.1 UniProtKB/TrEMBL
  ENSSSCT00055056578.1 UniProtKB/TrEMBL
  ENSSSCT00055056665.1 UniProtKB/TrEMBL
  ENSSSCT00060039119.1 UniProtKB/TrEMBL
  ENSSSCT00060039128.1 UniProtKB/TrEMBL
  ENSSSCT00065016665.1 UniProtKB/TrEMBL
  ENSSSCT00065016670.1 UniProtKB/TrEMBL
  ENSSSCT00070052952.1 UniProtKB/TrEMBL
  ENSSSCT00070052957.1 UniProtKB/TrEMBL
InterPro Sec8/EXOC4 UniProtKB/TrEMBL
  Sec8_exocyst UniProtKB/TrEMBL
  Sec8_M UniProtKB/TrEMBL
NCBI Gene EXOC4 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 4 UniProtKB/TrEMBL
  PTHR14146 UniProtKB/TrEMBL
Pfam Sec8_C UniProtKB/TrEMBL
  Sec8_exocyst UniProtKB/TrEMBL
UniProt A0A4X1VT96 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VTA2_PIG UniProtKB/TrEMBL
  A0A5G2QVV2_PIG UniProtKB/TrEMBL
  A0A8D0XK84_PIG UniProtKB/TrEMBL
  A0A8D1S230 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FHC7 ENTREZGENE, UniProtKB/TrEMBL
  F1SNG6 ENTREZGENE, UniProtKB/TrEMBL
  M3UYX8 ENTREZGENE
UniProt Secondary M3UYX8 UniProtKB/TrEMBL
VGNC ID VGNC:87830 ENTREZGENE