PTGR1 (prostaglandin reductase 1) - Rat Genome Database

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Gene: PTGR1 (prostaglandin reductase 1) Sus scrofa
Analyze
Symbol: PTGR1
Name: prostaglandin reductase 1
RGD ID: 13990213
Description: ENCODES a protein that exhibits 13-lipoxin reductase activity; 15-oxoprostaglandin 13-oxidase [NAD(P)+] activity; leukotriene B4 12-hydroxy dehydrogenase activity; INVOLVED IN leukotriene B4 metabolic process; lipoxin A4 metabolic process; prostaglandin metabolic process; ASSOCIATED WITH autism spectrum disorder (ortholog); Experimental Liver Neoplasms (ortholog); hypertension (ortholog); FOUND IN cytoplasm; cytosol (ortholog); nucleus (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 15-oxoprostaglandin 13-reductase; DIG-1; leukotriene B4 12-hydroxydehydrogenase; LTB4DH; NAD(P)H-dependent alkenal/one oxidoreductase; NADP dependent leukotriene b4 12-hydroxydehydrogenase; NADP-dependent leukotriene B4 12-hydroxydehydrogenase; PRG-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,373,282 - 252,395,948 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,373,272 - 252,395,948 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21283,170,868 - 283,177,809 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA,IEA,ISO)
cytosol  (ISO,TAS)
membrane  (IEA)
nucleus  (ISO)

References
Additional References at PubMed
PMID:8394361   PMID:8576264   PMID:9461497   PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PTGR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,373,282 - 252,395,948 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,373,272 - 252,395,948 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21283,170,868 - 283,177,809 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTGR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389111,549,722 - 111,599,647 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9111,549,722 - 111,599,893 (-)EnsemblGRCh38hg38GRCh38
GRCh379114,312,002 - 114,361,927 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369113,365,073 - 113,401,532 (-)NCBINCBI36Build 36hg18NCBI36
Build 349111,404,807 - 111,441,266NCBI
Celera984,811,079 - 84,861,206 (-)NCBICelera
Cytogenetic Map9q31.3NCBI
HuRef983,911,040 - 83,960,627 (-)NCBIHuRef
CHM1_19114,458,441 - 114,508,602 (-)NCBICHM1_1
T2T-CHM13v2.09123,721,096 - 123,771,025 (-)NCBIT2T-CHM13v2.0
Ptgr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39458,965,590 - 58,987,131 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl458,965,439 - 58,987,119 (-)EnsemblGRCm39 Ensembl
GRCm38458,965,590 - 58,987,131 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl458,965,439 - 58,987,119 (-)EnsemblGRCm38mm10GRCm38
MGSCv37458,978,462 - 58,999,950 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36459,059,644 - 59,081,132 (-)NCBIMGSCv36mm8
Celera458,878,602 - 58,900,216 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map432.36NCBI
Ptgr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8578,579,060 - 78,597,671 (-)NCBIGRCr8
mRatBN7.2573,784,000 - 73,802,624 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl573,784,009 - 73,802,666 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx575,685,300 - 75,703,919 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0577,506,913 - 77,525,540 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0577,479,071 - 77,497,693 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0576,110,746 - 76,129,361 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl576,110,738 - 76,129,441 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0580,255,192 - 80,273,709 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4577,010,809 - 77,029,326 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1577,015,922 - 77,034,439 (-)NCBI
Celera572,607,043 - 72,625,264 (-)NCBICelera
Cytogenetic Map5q24NCBI
Ptgr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541915,708,456 - 15,739,147 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541915,708,456 - 15,738,774 (+)NCBIChiLan1.0ChiLan1.0
PTGR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21127,816,183 - 27,860,132 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1927,824,016 - 27,862,494 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0982,700,541 - 82,739,024 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19110,862,122 - 110,900,829 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9110,848,804 - 110,900,829 (-)Ensemblpanpan1.1panPan2
PTGR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11166,191,155 - 66,212,075 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1166,191,165 - 66,209,219 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1164,601,934 - 64,622,894 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01167,324,103 - 67,345,145 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1167,324,105 - 67,345,298 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11165,841,533 - 65,862,116 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01165,864,869 - 65,885,860 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01166,554,733 - 66,575,785 (-)NCBIUU_Cfam_GSD_1.0
Ptgr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947181,503,868 - 181,535,213 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365591,731,533 - 1,762,671 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365591,731,346 - 1,762,676 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTGR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11227,918,990 - 27,999,736 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603514,779,257 - 14,799,467 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptgr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476023,406,085 - 23,433,283 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PTGR1
901 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000043252   ⟹   ENSSSCP00000039006
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1252,373,282 - 252,395,948 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000058973   ⟹   ENSSSCP00000052358
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1252,373,282 - 252,395,447 (-)Ensembl
RefSeq Acc Id: NM_214385   ⟹   NP_999550
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,373,277 - 252,395,433 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021083385   ⟹   XP_020939044
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,373,272 - 252,395,948 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021083390   ⟹   XP_020939049
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,373,272 - 252,394,013 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020939044   ⟸   XM_021083385
- Peptide Label: isoform X1
- UniProtKB: A0A8D1PYF8 (UniProtKB/TrEMBL),   A0A287A5G5 (UniProtKB/TrEMBL),   A0A8D0VR54 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939049   ⟸   XM_021083390
- Peptide Label: isoform X2
- UniProtKB: A0A8D1J4L1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_999550   ⟸   NM_214385
- UniProtKB: Q29073 (UniProtKB/Swiss-Prot),   O62642 (UniProtKB/Swiss-Prot),   A0A8D0VR54 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000052358   ⟸   ENSSSCT00000058973
Ensembl Acc Id: ENSSSCP00000039006   ⟸   ENSSSCT00000043252
Protein Domains
Enoyl reductase (ER)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021386 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025054583 UniProtKB/TrEMBL
  ENSSSCG00030014952 UniProtKB/TrEMBL
  ENSSSCG00035017612 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00040043714 UniProtKB/TrEMBL
  ENSSSCG00045035006 UniProtKB/TrEMBL
  ENSSSCG00050060487 UniProtKB/TrEMBL
  ENSSSCG00055008302 UniProtKB/TrEMBL
  ENSSSCG00065029338 UniProtKB/TrEMBL
  ENSSSCG00070022262 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00105033034 UniProtKB/Swiss-Prot
  ENSSSCG00110005300 UniProtKB/Swiss-Prot
  ENSSSCG00115007164 UniProtKB/Swiss-Prot
  ENSSSCG00130027481 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000043252 ENTREZGENE
  ENSSSCT00000043252.3 UniProtKB/TrEMBL
  ENSSSCT00000058973 ENTREZGENE
  ENSSSCT00000058973.2 UniProtKB/TrEMBL
  ENSSSCT00025074721.1 UniProtKB/TrEMBL
  ENSSSCT00025074874.1 UniProtKB/TrEMBL
  ENSSSCT00030020630.1 UniProtKB/TrEMBL
  ENSSSCT00030020661.1 UniProtKB/TrEMBL
  ENSSSCT00030020668.1 UniProtKB/TrEMBL
  ENSSSCT00035022646.1 UniProtKB/TrEMBL
  ENSSSCT00035022658.1 UniProtKB/Swiss-Prot
  ENSSSCT00035022665.1 UniProtKB/TrEMBL
  ENSSSCT00040058559.1 UniProtKB/TrEMBL
  ENSSSCT00040058644.1 UniProtKB/TrEMBL
  ENSSSCT00040058705.1 UniProtKB/TrEMBL
  ENSSSCT00045060103.1 UniProtKB/TrEMBL
  ENSSSCT00045060237.1 UniProtKB/TrEMBL
  ENSSSCT00045060310.1 UniProtKB/TrEMBL
  ENSSSCT00050082419.1 UniProtKB/TrEMBL
  ENSSSCT00050082425.1 UniProtKB/TrEMBL
  ENSSSCT00055016213.1 UniProtKB/TrEMBL
  ENSSSCT00055016260.1 UniProtKB/TrEMBL
  ENSSSCT00065039586.1 UniProtKB/TrEMBL
  ENSSSCT00065039589.1 UniProtKB/TrEMBL
  ENSSSCT00065039593.1 UniProtKB/TrEMBL
  ENSSSCT00065039597.1 UniProtKB/TrEMBL
  ENSSSCT00065039607.1 UniProtKB/TrEMBL
  ENSSSCT00070044298.1 UniProtKB/Swiss-Prot
  ENSSSCT00070044304.1 UniProtKB/Swiss-Prot
  ENSSSCT00070044312.1 UniProtKB/Swiss-Prot
  ENSSSCT00070044325.1 UniProtKB/TrEMBL
  ENSSSCT00070044338.1 UniProtKB/Swiss-Prot
  ENSSSCT00070044343.1 UniProtKB/Swiss-Prot
  ENSSSCT00105062855 UniProtKB/Swiss-Prot
  ENSSSCT00110010443 UniProtKB/Swiss-Prot
  ENSSSCT00115012476 UniProtKB/Swiss-Prot
  ENSSSCT00130053529 UniProtKB/Swiss-Prot
Gene3D-CATH Medium-chain alcohol dehydrogenases, catalytic domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ADH_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ADH_N_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GroES-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MDR_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PKS_ER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTGR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397678 UniProtKB/Swiss-Prot
NCBI Gene PTGR1 ENTREZGENE
PANTHER PROSTAGLANDIN REDUCTASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR43205 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ADH_N_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ADH_zinc_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PKS_ER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50129 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A287A5G5 ENTREZGENE, UniProtKB/TrEMBL
  A0A287B7R3_PIG UniProtKB/TrEMBL
  A0A8D0VR54 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Z0P7_PIG UniProtKB/TrEMBL
  A0A8D1C0K1_PIG UniProtKB/TrEMBL
  A0A8D1CND3_PIG UniProtKB/TrEMBL
  A0A8D1EKW3_PIG UniProtKB/TrEMBL
  A0A8D1ELF4_PIG UniProtKB/TrEMBL
  A0A8D1EMR9_PIG UniProtKB/TrEMBL
  A0A8D1J4L1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1L8H6_PIG UniProtKB/TrEMBL
  A0A8D1NBI5_PIG UniProtKB/TrEMBL
  A0A8D1PYF8 ENTREZGENE, UniProtKB/TrEMBL
  O62642 ENTREZGENE
  PTGR1_PIG UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary O62642 UniProtKB/Swiss-Prot
VGNC ID VGNC:91957 ENTREZGENE