HMGB1 (high mobility group box 1) - Rat Genome Database

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Gene: HMGB1 (high mobility group box 1) Sus scrofa
Analyze
Symbol: HMGB1
Name: high mobility group box 1
RGD ID: 13970387
Description: ENCODES a protein that exhibits non-sequence-specific DNA binding, bending; 5S rRNA binding (ortholog); bent DNA binding (ortholog); INVOLVED IN double-strand break repair via nonhomologous end joining; MyD88-dependent toll-like receptor signaling pathway; nucleosome assembly; PARTICIPATES IN cisplatin drug pathway; mismatch repair pathway; pro-inflammatory cytokine mediated pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); Acute Lung Injury (ortholog); Acute-On-Chronic Liver Failure (ortholog); FOUND IN chromatin; alphav-beta3 integrin-HMGB1 complex (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: high mobility group protein 1; high mobility group protein B1; HMG-1; non-histone protein HMG1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1117,195,556 - 7,321,071 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2117,006,105 - 7,131,947 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Acute Experimental Pancreatitis  (ISO)
Acute Lung Injury  (ISO)
Acute-On-Chronic Liver Failure  (ISO)
alcohol dependence  (ISO)
alcohol use disorder  (ISO)
Alzheimer's disease  (ISO)
amyotrophic lateral sclerosis  (ISO)
atherosclerosis  (ISO)
Binge Drinking  (ISO)
Brachyphalangy, Polydactyly, and Tibial Aplasia/Hypoplasia  (ISO)
brain infarction  (ISO)
Brain Injuries  (ISO)
Burns  (ISO)
Cardiomegaly  (ISO)
cerebral infarction  (ISO)
Chemical and Drug Induced Liver Injury  (ISO)
Chemotherapy-Related Cognitive Impairment  (ISO)
Chronic Allograft Dysfunction  (ISO)
colon adenocarcinoma  (ISO)
congestive heart failure  (ISO)
Drug-Related Side Effects and Adverse Reactions  (ISO)
Endotoxemia  (ISO)
esophagus squamous cell carcinoma  (ISO)
essential hypertension  (ISO)
Experimental Arthritis  (ISO)
Experimental Autoimmune Myocarditis  (ISO)
Experimental Colitis  (ISO)
Experimental Diabetes Mellitus  (ISO)
extrahepatic cholestasis  (ISO)
Fever  (ISO)
genetic disease  (ISO)
Heat Stroke  (ISO)
high grade glioma  (ISO)
hydrocephalus  (ISO)
Hyperalgesia  (ISO)
hypertension  (ISO)
Inflammation  (ISO)
Intestinal Reperfusion Injury  (ISO)
Kawasaki disease  (ISO)
Knee Osteoarthritis  (ISO)
leukostasis  (ISO)
Liver Reperfusion Injury  (ISO)
Lung Reperfusion Injury  (ISO)
Lymphatic Metastasis  (ISO)
middle cerebral artery infarction  (ISO)
Multiple Organ Failure  (ISO)
myocardial infarction  (ISO)
Myocardial Ischemia  (ISO)
Myocardial Reperfusion Injury  (ISO)
Necrosis  (ISO)
Neuralgia  (ISO)
Neurodevelopmental Disorders  (ISO)
obstructive jaundice  (ISO)
osteoarthritis  (ISO)
Oxygen-Induced Retinopathy  (ISO)
Painful Neuropathy  (ISO)
periodontitis  (ISO)
Postoperative Cognitive Dysfunction  (ISO)
Premature Aging  (ISO)
pulmonary fibrosis  (ISO)
pulmonary hypertension  (ISO)
Reperfusion Injury  (ISO)
Retina Reperfusion Injury  (ISO)
sciatic neuropathy  (ISO)
Sepsis  (ISO)
Spinal Cord Injuries  (ISO)
systemic scleroderma  (ISO)
Systemic Vasculitis  (ISO)
transient cerebral ischemia  (ISO)
Ventilator-Induced Lung Injury  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin cytoskeleton organization  (ISO)
activation of innate immune response  (ISO)
adaptive immune response  (IEA)
apoptotic cell clearance  (ISS)
autophagy  (IEA)
base-excision repair  (ISO)
cell morphogenesis  (ISO)
cellular response to interleukin-1  (ISO)
cellular response to interleukin-7  (ISO)
cellular response to lipopolysaccharide  (ISO)
chemotaxis  (IEA,ISO)
chromatin organization  (ISO)
circadian rhythm  (ISO)
DNA damage response  (IEA)
DNA geometric change  (ISO,ISS)
DNA metabolic process  (IEA)
DNA recombination  (IEA)
DNA repair  (IEA)
double-strand break repair  (ISS)
double-strand break repair via nonhomologous end joining  (IDA)
endothelial cell chemotaxis  (ISO)
endothelial cell proliferation  (ISO)
eye development  (ISO)
glycogen catabolic process  (ISO)
heterochromatin formation  (ISO)
immune system process  (IEA)
induction of positive chemotaxis  (ISO)
inflammatory response  (IEA)
inflammatory response to antigenic stimulus  (ISO)
innate immune response  (IEA)
lung development  (ISO)
macrophage activation involved in immune response  (ISO)
male-specific defense response to bacterium  (ISO)
memory  (ISO)
MyD88-dependent toll-like receptor signaling pathway  (IDA)
myeloid cell differentiation  (ISO)
myeloid dendritic cell activation  (ISO)
myeloid progenitor cell differentiation  (ISO)
myoblast proliferation  (ISO)
negative regulation of apoptotic cell clearance  (ISO)
negative regulation of blood vessel endothelial cell migration  (ISO)
negative regulation of CD4-positive, alpha-beta T cell differentiation  (ISO)
negative regulation of DNA replication  (ISO)
negative regulation of RNA polymerase II transcription preinitiation complex assembly  (ISS)
negative regulation of transcription by RNA polymerase II  (ISO)
negative regulation of type II interferon production  (ISO)
nervous system development  (ISO)
neuron apoptotic process  (ISO)
neuron projection development  (ISO)
neutrophil clearance  (ISS)
nucleosome assembly  (IDA)
plasmacytoid dendritic cell activation  (ISO)
positive regulation of activated T cell proliferation  (ISO)
positive regulation of apoptotic process  (ISO)
positive regulation of autophagy  (ISO)
positive regulation of blood vessel endothelial cell migration  (ISO)
positive regulation of cell migration  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of chemokine (C-X-C motif) ligand 2 production  (ISO)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of dendritic cell differentiation  (ISO)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of glycogen catabolic process  (ISO)
positive regulation of innate immune response  (ISO)
positive regulation of interferon-alpha production  (ISO)
positive regulation of interferon-beta production  (ISO)
positive regulation of interleukin-1 beta production  (ISO)
positive regulation of interleukin-1 production  (ISO)
positive regulation of interleukin-10 production  (ISO)
positive regulation of interleukin-12 production  (ISO)
positive regulation of interleukin-6 production  (ISO)
positive regulation of interleukin-8 production  (ISO)
positive regulation of JNK cascade  (ISO)
positive regulation of macrophage inflammatory protein 1 alpha production  (ISO)
positive regulation of MAPK cascade  (ISO)
positive regulation of mesenchymal cell proliferation  (ISO)
positive regulation of mismatch repair  (ISO)
positive regulation of mitotic cell cycle  (ISO)
positive regulation of monocyte chemotactic protein-1 production  (ISO)
positive regulation of monocyte chemotaxis  (ISO)
positive regulation of myeloid cell apoptotic process  (ISO)
positive regulation of myeloid cell differentiation  (ISO)
positive regulation of myeloid progenitor cell differentiation  (ISO)
positive regulation of myoblast differentiation  (ISO)
positive regulation of neuron projection development  (ISO)
positive regulation of non-canonical NF-kappaB signal transduction  (IDA)
positive regulation of protein phosphorylation  (ISO)
positive regulation of smooth muscle cell migration  (ISO)
positive regulation of sprouting angiogenesis  (ISO)
positive regulation of toll-like receptor 2 signaling pathway  (ISO)
positive regulation of toll-like receptor 4 signaling pathway  (ISO)
positive regulation of toll-like receptor 9 signaling pathway  (ISS)
positive regulation of transcription by RNA polymerase II  (ISO)
positive regulation of tumor necrosis factor production  (ISO)
positive regulation of vascular endothelial cell proliferation  (ISO)
positive regulation of wound healing  (ISO)
protein-containing complex assembly  (ISO)
psychomotor behavior  (ISO)
regulation of nucleotide-excision repair  (ISO)
regulation of restriction endodeoxyribonuclease activity  (ISO)
regulation of T cell mediated immune response to tumor cell  (ISS)
regulation of tolerance induction  (ISO)
regulation of transcription by RNA polymerase II  (IBA)
response to antibiotic  (ISO)
response to ethanol  (ISO)
response to glucocorticoid  (ISO)
response to glucose  (ISO)
response to insulin  (ISO)
response to lipopolysaccharide  (ISO)
response to type II interferon  (ISO)
response to xenobiotic stimulus  (ISO)
T-helper 1 cell activation  (ISO)
T-helper 1 cell differentiation  (ISO)
toll-like receptor 2 signaling pathway  (IDA)
toll-like receptor 4 signaling pathway  (IDA)
transcription by RNA polymerase II  (ISO)
V(D)J recombination  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:2465778   PMID:3191113   PMID:3571199   PMID:9600082   PMID:11275566   PMID:14660645   PMID:14681463   PMID:17145712   PMID:18278457   PMID:22301074   PMID:22902066   PMID:26038024  
PMID:30032202   PMID:34287039   PMID:34439812  


Genomics

Comparative Map Data
HMGB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1117,195,556 - 7,321,071 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2117,006,105 - 7,131,947 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HMGB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381330,456,704 - 30,617,597 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1330,456,704 - 30,617,597 (-)EnsemblGRCh38hg38GRCh38
GRCh371331,030,841 - 31,191,734 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361329,930,877 - 29,938,081 (-)NCBINCBI36Build 36hg18NCBI36
Celera1312,102,423 - 12,109,630 (-)NCBICelera
Cytogenetic Map13q12.3NCBI
HuRef1311,850,667 - 11,857,904 (-)NCBIHuRef
CHM1_11331,000,434 - 31,007,630 (-)NCBICHM1_1
T2T-CHM13v2.01329,679,118 - 29,839,654 (-)NCBIT2T-CHM13v2.0
Hmgb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395148,983,512 - 148,989,867 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5148,983,512 - 149,121,299 (-)EnsemblGRCm39 Ensembl
GRCm385149,046,702 - 149,053,057 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5149,046,702 - 149,184,489 (-)EnsemblGRCm38mm10GRCm38
MGSCv375149,858,803 - 149,864,613 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365149,357,579 - 149,363,386 (-)NCBIMGSCv36mm8
Celera5147,061,615 - 147,067,633 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map589.18NCBI
Hmgb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,009,236 - 11,015,941 (+)NCBIGRCr8
mRatBN7.2125,972,950 - 5,979,658 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl125,901,586 - 5,978,565 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1634,028,446 - 34,030,648 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx126,644,838 - 6,651,551 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,267,954 - 7,274,667 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0126,295,972 - 6,302,685 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0127,082,529 - 7,090,246 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1637,500,017 - 37,502,237 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0129,177,615 - 9,178,878 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11637,462,230 - 37,464,451 (+)NCBI
Celera127,732,744 - 7,737,689 (+)NCBICelera
Cytogenetic Map12p11NCBI
Hmgb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543115,373,207 - 15,377,339 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543115,373,207 - 15,377,339 (+)NCBIChiLan1.0ChiLan1.0
HMGB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21430,044,445 - 30,202,275 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11321,152,234 - 21,308,975 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01311,737,942 - 11,894,923 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11330,173,875 - 30,179,527 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1330,174,899 - 30,179,527 (-)Ensemblpanpan1.1panPan2
HMGB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,431,223 - 9,558,167 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,431,218 - 9,558,165 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha259,596,948 - 9,603,279 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,542,952 - 9,670,011 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,663,749 - 9,670,011 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1259,558,389 - 9,564,743 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0259,566,227 - 9,572,605 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0259,608,257 - 9,614,621 (+)NCBIUU_Cfam_GSD_1.0
Hmgb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945170,705,559 - 170,715,427 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647225,236,728 - 25,246,580 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647225,236,728 - 25,246,585 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HMGB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.139,353,333 - 9,357,765 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605735,008,842 - 35,015,311 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hmgb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247767,793,259 - 7,863,184 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247767,858,400 - 7,862,716 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HMGB1
4145 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001004034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005668316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005668317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005668318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021065159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021065160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021065161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK230788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK239644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK351580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK351923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK391558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY682220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY682824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY682825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU062617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01002600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M21683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: NM_001004034   ⟹   NP_001004034
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1117,195,559 - 7,199,523 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005668316   ⟹   XP_005668373
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1117,195,556 - 7,201,808 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005668317   ⟹   XP_005668374
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1117,195,556 - 7,321,071 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005668318   ⟹   XP_005668375
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1117,195,556 - 7,320,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021065159   ⟹   XP_020920818
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1117,195,556 - 7,320,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021065160   ⟹   XP_020920819
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1117,195,556 - 7,200,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021065161   ⟹   XP_020920820
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1117,202,197 - 7,220,136 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001004034 (Get FASTA)   NCBI Sequence Viewer  
  XP_005668373 (Get FASTA)   NCBI Sequence Viewer  
  XP_005668374 (Get FASTA)   NCBI Sequence Viewer  
  XP_005668375 (Get FASTA)   NCBI Sequence Viewer  
  XP_020920818 (Get FASTA)   NCBI Sequence Viewer  
  XP_020920819 (Get FASTA)   NCBI Sequence Viewer  
  XP_020920820 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA31050 (Get FASTA)   NCBI Sequence Viewer  
  AAW29969 (Get FASTA)   NCBI Sequence Viewer  
  AAW30632 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000009955.4
  ENSSSCP00000054523
  ENSSSCP00000054523.3
  ENSSSCP00000054930.2
  ENSSSCP00000074860
  ENSSSCP00000074860.1
  ENSSSCP00000079865.1
  ENSSSCP00000079872
  ENSSSCP00000079872.1
  ENSSSCP00015021189.1
  ENSSSCP00025022156.1
  ENSSSCP00025022229.1
  ENSSSCP00030007318.1
  ENSSSCP00030007327.1
  ENSSSCP00030007332.1
  ENSSSCP00035022116.1
  ENSSSCP00035022119.1
  ENSSSCP00040029458.1
  ENSSSCP00040029529.1
  ENSSSCP00045044584.1
  ENSSSCP00045044611.1
  ENSSSCP00050007068.1
  ENSSSCP00055041528.1
  ENSSSCP00055041685.1
  ENSSSCP00060034951.1
  ENSSSCP00065028172.1
  ENSSSCP00065028174.1
  ENSSSCP00065028179.1
  ENSSSCP00065028181.1
  ENSSSCP00065028185.1
  ENSSSCP00065028186.1
  ENSSSCP00065028190.1
  ENSSSCP00070015308.1
  ENSSSCP00070015316.1
  ENSSSCP00070015325.1
  ENSSSCP00070015336.1
  ENSSSCP00070015351.1
GenBank Protein P12682 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005668374   ⟸   XM_005668317
- Peptide Label: isoform X1
- UniProtKB: A0A8W4FKZ0 (UniProtKB/TrEMBL),   A7E1T5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005668375   ⟸   XM_005668318
- Peptide Label: isoform X1
- UniProtKB: A0A8W4FKZ0 (UniProtKB/TrEMBL),   A7E1T5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920818   ⟸   XM_021065159
- Peptide Label: isoform X1
- UniProtKB: A0A8W4FKZ0 (UniProtKB/TrEMBL),   A7E1T5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005668373   ⟸   XM_005668316
- Peptide Label: isoform X1
- UniProtKB: A0A8W4FKZ0 (UniProtKB/TrEMBL),   A7E1T5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920819   ⟸   XM_021065160
- Peptide Label: isoform X1
- UniProtKB: A0A8W4FKZ0 (UniProtKB/TrEMBL),   A7E1T5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001004034   ⟸   NM_001004034
- UniProtKB: P12682 (UniProtKB/Swiss-Prot),   A7E1T5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920820   ⟸   XM_021065161
- Peptide Label: isoform X2
- Sequence:
Protein Domains
HMG box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009327 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015039268 UniProtKB/TrEMBL
  ENSSSCG00025038184 UniProtKB/TrEMBL
  ENSSSCG00030011920 UniProtKB/TrEMBL
  ENSSSCG00035041342 UniProtKB/TrEMBL
  ENSSSCG00040051235 UniProtKB/TrEMBL
  ENSSSCG00045036717 UniProtKB/TrEMBL
  ENSSSCG00050012708 UniProtKB/TrEMBL
  ENSSSCG00055026288 UniProtKB/TrEMBL
  ENSSSCG00060059146 UniProtKB/TrEMBL
  ENSSSCG00065047514 UniProtKB/TrEMBL
  ENSSSCG00070009464 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010221.4 UniProtKB/TrEMBL
  ENSSSCT00000044321 ENTREZGENE
  ENSSSCT00000044321.3 UniProtKB/TrEMBL
  ENSSSCT00000046065.2 UniProtKB/TrEMBL
  ENSSSCT00000098183 ENTREZGENE
  ENSSSCT00000098183.1 UniProtKB/TrEMBL
  ENSSSCT00000098317 ENTREZGENE
  ENSSSCT00000098317.1 UniProtKB/TrEMBL
  ENSSSCT00000105240.1 UniProtKB/TrEMBL
  ENSSSCT00015052939.1 UniProtKB/TrEMBL
  ENSSSCT00025051931.1 UniProtKB/TrEMBL
  ENSSSCT00025052110.1 UniProtKB/TrEMBL
  ENSSSCT00030016348.1 UniProtKB/TrEMBL
  ENSSSCT00030016358.1 UniProtKB/TrEMBL
  ENSSSCT00030016364.1 UniProtKB/TrEMBL
  ENSSSCT00035054949.1 UniProtKB/TrEMBL
  ENSSSCT00035054957.1 UniProtKB/TrEMBL
  ENSSSCT00040069207.1 UniProtKB/TrEMBL
  ENSSSCT00040069341.1 UniProtKB/TrEMBL
  ENSSSCT00045063237.1 UniProtKB/TrEMBL
  ENSSSCT00045063272.1 UniProtKB/TrEMBL
  ENSSSCT00050017174.1 UniProtKB/TrEMBL
  ENSSSCT00055051980.1 UniProtKB/TrEMBL
  ENSSSCT00055052173.1 UniProtKB/TrEMBL
  ENSSSCT00060080755.1 UniProtKB/TrEMBL
  ENSSSCT00065064995.1 UniProtKB/TrEMBL
  ENSSSCT00065065002.1 UniProtKB/TrEMBL
  ENSSSCT00065065009.1 UniProtKB/TrEMBL
  ENSSSCT00065065011.1 UniProtKB/TrEMBL
  ENSSSCT00065065018.1 UniProtKB/TrEMBL
  ENSSSCT00065065021.1 UniProtKB/TrEMBL
  ENSSSCT00065065030.1 UniProtKB/TrEMBL
  ENSSSCT00070018425.1 UniProtKB/TrEMBL
  ENSSSCT00070018434.1 UniProtKB/TrEMBL
  ENSSSCT00070018445.1 UniProtKB/TrEMBL
  ENSSSCT00070018459.1 UniProtKB/TrEMBL
  ENSSSCT00070018476.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HMG_box_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMG_boxA_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMGB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:445521 UniProtKB/Swiss-Prot
NCBI Gene HMGB1 ENTREZGENE
PANTHER HIGH MOBILITY GROUP PROTEIN B1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HIGH MOBILITY GROUP PROTEIN B1 UniProtKB/TrEMBL
  HIGH MOBILITY GROUP PROTEIN DSP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HMG_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMG_box_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS HIGHMOBLTY12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HMG_BOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMG_BOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HMG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A287BEI7_PIG UniProtKB/TrEMBL
  A0A4X1THK6_PIG UniProtKB/TrEMBL
  A0A4X1TK11_PIG UniProtKB/TrEMBL
  A0A8D0I6V2_PIG UniProtKB/TrEMBL
  A0A8D1RRK7_PIG UniProtKB/TrEMBL
  A0A8W4F6P8_PIG UniProtKB/TrEMBL
  A0A8W4FKZ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FNJ1_PIG UniProtKB/TrEMBL
  A7E1T5 ENTREZGENE, UniProtKB/TrEMBL
  F2Z594_PIG UniProtKB/TrEMBL
  HMGB1_PIG UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A0A287BFU3 UniProtKB/TrEMBL