RHO (rhodopsin) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: RHO (rhodopsin) Sus scrofa
Analyze
Symbol: RHO
Name: rhodopsin
RGD ID: 13956945
Description: ENCODES a protein that exhibits 11-cis retinal binding (ortholog); G protein-coupled photoreceptor activity (ortholog); retinal binding (ortholog); INVOLVED IN absorption of visible light (ortholog); cellular response to light stimulus (ortholog); detection of light stimulus (ortholog); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH alkaptonuria (ortholog); Coats disease (ortholog); cone-rod dystrophy (ortholog); FOUND IN membrane (ortholog); photoreceptor disc membrane (ortholog); photoreceptor inner segment membrane (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: PIGRHO1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1368,908,578 - 68,913,651 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11368,908,578 - 68,913,651 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21376,135,867 - 76,140,946 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:9335046   PMID:16402026   PMID:22301074   PMID:22842041   PMID:30032202  


Genomics

Comparative Map Data
RHO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1368,908,578 - 68,913,651 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11368,908,578 - 68,913,651 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21376,135,867 - 76,140,946 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RHO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383129,528,639 - 129,535,344 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3129,528,639 - 129,535,344 (+)EnsemblGRCh38hg38GRCh38
GRCh373129,247,482 - 129,254,187 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,730,172 - 130,736,877 (+)NCBINCBI36Build 36hg18NCBI36
Build 343130,730,179 - 130,736,885NCBI
Celera3127,674,318 - 127,681,023 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3126,630,783 - 126,637,404 (+)NCBIHuRef
CHM1_13129,210,611 - 129,217,316 (+)NCBICHM1_1
T2T-CHM13v2.03132,273,081 - 132,279,773 (+)NCBIT2T-CHM13v2.0
Rho
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396115,903,741 - 115,916,999 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6115,908,709 - 115,916,997 (+)EnsemblGRCm39 Ensembl
GRCm386115,926,754 - 115,940,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6115,931,748 - 115,940,036 (+)EnsemblGRCm38mm10GRCm38
MGSCv376115,881,945 - 115,888,848 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366115,897,546 - 115,904,449 (+)NCBIMGSCv36mm8
Celera6117,767,245 - 117,774,151 (+)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.72NCBI
Rho
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84150,653,205 - 150,658,367 (+)NCBIGRCr8
mRatBN7.24148,975,597 - 148,988,693 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4148,980,611 - 148,985,773 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4155,209,107 - 155,214,199 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04150,993,130 - 150,998,222 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04149,616,029 - 149,621,121 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04147,832,136 - 147,837,298 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4147,832,136 - 147,837,298 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04211,115,847 - 211,121,009 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44152,057,788 - 152,062,950 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14152,302,628 - 152,307,791 (+)NCBI
Celera4137,870,273 - 137,875,435 (+)NCBICelera
Cytogenetic Map4q42NCBI
Rho
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542917,787,337 - 17,791,982 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542917,787,337 - 17,791,982 (-)NCBIChiLan1.0ChiLan1.0
RHO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22127,461,364 - 127,471,171 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13127,466,088 - 127,473,896 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03126,586,510 - 126,593,028 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13133,938,419 - 133,944,928 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,938,419 - 133,944,928 (+)Ensemblpanpan1.1panPan2
RHO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1205,630,735 - 5,638,906 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha205,669,643 - 5,674,903 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0205,661,948 - 5,667,219 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl205,661,632 - 5,667,315 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1205,377,793 - 5,383,047 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0205,730,818 - 5,736,090 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0205,706,443 - 5,711,705 (-)NCBIUU_Cfam_GSD_1.0
Rho
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494218,008,183 - 18,014,175 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936602894,617 - 901,664 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936602896,730 - 901,480 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RHO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12251,513,611 - 51,520,589 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2251,515,081 - 51,519,974 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041114,957,244 - 114,963,876 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rho
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624872523,912 - 527,615 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624872523,892 - 528,278 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RHO
79 total Variants

Expression

RNA-SEQ Expression

circulatory system
hemolymphoid system
mesenchyme
mesoderm
3 1 2 3

Sequence


Ensembl Acc Id: ENSSSCT00000012686   ⟹   ENSSSCP00000012353
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1368,908,578 - 68,913,651 (+)Ensembl
RefSeq Acc Id: NM_214221   ⟹   NP_999386
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11368,908,578 - 68,913,651 (+)NCBI
Sequence:
RefSeq Acc Id: NP_999386   ⟸   NM_214221
- UniProtKB: O18766 (UniProtKB/Swiss-Prot),   A0A4X1U875 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000012353   ⟸   ENSSSCT00000012686

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011590 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00005030296 UniProtKB/Swiss-Prot
  ENSSSCG00015056060 UniProtKB/Swiss-Prot
  ENSSSCG00025027966 UniProtKB/Swiss-Prot
  ENSSSCG00030042653 UniProtKB/Swiss-Prot
  ENSSSCG00035075320 UniProtKB/Swiss-Prot
  ENSSSCG00040053115 UniProtKB/Swiss-Prot
  ENSSSCG00045005359 UniProtKB/Swiss-Prot
  ENSSSCG00050001576 UniProtKB/Swiss-Prot
  ENSSSCG00055011447 UniProtKB/Swiss-Prot
  ENSSSCG00060016077 UniProtKB/Swiss-Prot
  ENSSSCG00065010157 UniProtKB/Swiss-Prot
  ENSSSCG00070015848 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012686 ENTREZGENE
  ENSSSCT00000012686.2 UniProtKB/Swiss-Prot
  ENSSSCT00005048157 UniProtKB/Swiss-Prot
  ENSSSCT00015074764.1 UniProtKB/Swiss-Prot
  ENSSSCT00025037995.1 UniProtKB/Swiss-Prot
  ENSSSCT00030059461.1 UniProtKB/Swiss-Prot
  ENSSSCT00035102385.1 UniProtKB/Swiss-Prot
  ENSSSCT00040071930.1 UniProtKB/Swiss-Prot
  ENSSSCT00045008896.1 UniProtKB/Swiss-Prot
  ENSSSCT00050001985.1 UniProtKB/Swiss-Prot
  ENSSSCT00055022503.1 UniProtKB/Swiss-Prot
  ENSSSCT00060021418.1 UniProtKB/Swiss-Prot
  ENSSSCT00065013494.1 UniProtKB/Swiss-Prot
  ENSSSCT00070031141.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GPCR_opsins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Opsin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Retinal_BS UniProtKB/Swiss-Prot
  Rhodopsin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhodopsin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397437 UniProtKB/Swiss-Prot
NCBI Gene RHO ENTREZGENE
PANTHER OPSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHODOPSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhodopsin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OPSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHODOPSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OPSIN UniProtKB/Swiss-Prot
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1U875 ENTREZGENE, UniProtKB/TrEMBL
  O18766 ENTREZGENE, UniProtKB/Swiss-Prot
  Q71UZ8_PIG UniProtKB/TrEMBL
VGNC ID VGNC:92283 ENTREZGENE