RHO (rhodopsin) - Rat Genome Database

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Pathways
Gene: RHO (rhodopsin) Sus scrofa
Analyze
Symbol: RHO
Name: rhodopsin
RGD ID: 13956945
Description: ENCODES a protein that exhibits 11-cis retinal binding (ortholog); G protein-coupled photoreceptor activity (ortholog); retinal binding (ortholog); INVOLVED IN absorption of visible light (ortholog); G protein-coupled opsin signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH Coats disease (ortholog); cone-rod dystrophy (ortholog); cone-rod dystrophy 14 (ortholog); FOUND IN membrane (ortholog); photoreceptor disc membrane (ortholog); photoreceptor inner segment membrane (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: PIGRHO1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1368,908,578 - 68,913,651 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11368,908,578 - 68,913,651 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21376,135,867 - 76,140,946 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:9335046   PMID:16402026   PMID:22301074   PMID:22842041   PMID:30032202  


Genomics

Comparative Map Data
RHO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1368,908,578 - 68,913,651 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11368,908,578 - 68,913,651 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21376,135,867 - 76,140,946 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RHO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383129,528,639 - 129,535,344 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3129,528,639 - 129,535,344 (+)Ensemblhg38GRCh38
GRCh373129,247,482 - 129,254,187 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,730,172 - 130,736,877 (+)NCBIBuild 36Build 36hg18NCBI36
Build 343130,730,179 - 130,736,885NCBI
Celera3127,674,318 - 127,681,023 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3126,630,783 - 126,637,404 (+)NCBIHuRef
CHM1_13129,210,611 - 129,217,316 (+)NCBICHM1_1
T2T-CHM13v2.03132,273,081 - 132,279,773 (+)NCBIT2T-CHM13v2.0
Rho
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396115,903,741 - 115,916,999 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6115,908,709 - 115,916,997 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386115,926,754 - 115,940,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6115,931,748 - 115,940,036 (+)Ensemblmm10GRCm38
MGSCv376115,881,945 - 115,888,848 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366115,897,546 - 115,904,449 (+)NCBIMGSCv36mm8
Celera6117,767,245 - 117,774,151 (+)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.72NCBI
Rho
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84150,653,205 - 150,658,367 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4150,653,205 - 150,658,367 (+)EnsemblGRCr8
mRatBN7.24148,975,597 - 148,988,693 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4148,980,611 - 148,985,773 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4155,209,107 - 155,214,199 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04150,993,130 - 150,998,222 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04149,616,029 - 149,621,121 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04147,832,136 - 147,837,298 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4147,832,136 - 147,837,298 (+)Ensemblrn6Rnor6.0
Rnor_5.04211,115,847 - 211,121,009 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44152,057,788 - 152,062,950 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4137,870,273 - 137,875,435 (+)NCBICelera
RGSC_v3.14152,302,628 - 152,307,791 (+)NCBI
Cytogenetic Map4q42NCBI
Rho
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542917,787,337 - 17,791,982 (-)Ensembl
ChiLan1.0NW_00495542917,787,337 - 17,791,982 (-)NCBIChiLan1.0ChiLan1.0
RHO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22127,461,364 - 127,471,171 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13127,466,088 - 127,473,896 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03126,586,510 - 126,593,028 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13133,938,419 - 133,944,928 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,938,419 - 133,944,928 (+)EnsemblpanPan2panpan1.1
RHO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1205,630,735 - 5,638,906 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha205,669,643 - 5,674,903 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0205,661,948 - 5,667,219 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl205,661,632 - 5,667,315 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1205,377,793 - 5,383,047 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0205,730,818 - 5,736,090 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0205,706,443 - 5,711,705 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rho
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494218,008,183 - 18,014,175 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936602894,617 - 901,664 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936602896,730 - 901,480 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RHO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12251,513,611 - 51,520,589 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2251,515,081 - 51,519,974 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041114,957,244 - 114,963,876 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rho
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624872523,912 - 527,615 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624872523,892 - 528,278 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rho
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1630,793,145 - 30,798,434 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in RHO
80 total Variants

Expression

RNA-SEQ Expression

circulatory system
hemolymphoid system
mesenchyme
mesoderm
3 1 2 3

Sequence


Ensembl Acc Id: ENSSSCT00000012686   ⟹   ENSSSCP00000012353
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1368,908,578 - 68,913,651 (+)Ensembl
RefSeq Acc Id: NM_214221   ⟹   NP_999386
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11368,908,578 - 68,913,651 (+)NCBI
Sequence:
RefSeq Acc Id: NP_999386   ⟸   NM_214221
- UniProtKB: O18766 (UniProtKB/Swiss-Prot),   A0A4X1U875 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000012353   ⟸   ENSSSCT00000012686

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011590 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00015056060 UniProtKB/Swiss-Prot
  ENSSSCG00025027966 UniProtKB/Swiss-Prot
  ENSSSCG00030042653 UniProtKB/Swiss-Prot
  ENSSSCG00035075320 UniProtKB/Swiss-Prot
  ENSSSCG00040053115 UniProtKB/Swiss-Prot
  ENSSSCG00045005359 UniProtKB/Swiss-Prot
  ENSSSCG00050001576 UniProtKB/Swiss-Prot
  ENSSSCG00055011447 UniProtKB/Swiss-Prot
  ENSSSCG00060016077 UniProtKB/Swiss-Prot
  ENSSSCG00065010157 UniProtKB/Swiss-Prot
  ENSSSCG00105031884 UniProtKB/Swiss-Prot
  ENSSSCG00110031565 UniProtKB/Swiss-Prot
  ENSSSCG00115022188 UniProtKB/Swiss-Prot
  ENSSSCG00130018342 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000012686 ENTREZGENE
  ENSSSCT00000012686.2 UniProtKB/Swiss-Prot
  ENSSSCT00015074764.1 UniProtKB/Swiss-Prot
  ENSSSCT00025037995.1 UniProtKB/Swiss-Prot
  ENSSSCT00030059461.1 UniProtKB/Swiss-Prot
  ENSSSCT00035102385.1 UniProtKB/Swiss-Prot
  ENSSSCT00040071930.1 UniProtKB/Swiss-Prot
  ENSSSCT00045008896.1 UniProtKB/Swiss-Prot
  ENSSSCT00050001985.1 UniProtKB/Swiss-Prot
  ENSSSCT00055022503.1 UniProtKB/Swiss-Prot
  ENSSSCT00060021418.1 UniProtKB/Swiss-Prot
  ENSSSCT00065013494.1 UniProtKB/Swiss-Prot
  ENSSSCT00105060621 UniProtKB/Swiss-Prot
  ENSSSCT00110060320 UniProtKB/Swiss-Prot
  ENSSSCT00115039290 UniProtKB/Swiss-Prot
  ENSSSCT00130035707 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
InterPro GPCR_opsins UniProtKB/Swiss-Prot
  GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  Opsin UniProtKB/Swiss-Prot
  Retinal_BS UniProtKB/Swiss-Prot
  Rhodopsin UniProtKB/Swiss-Prot
  Rhodopsin_N UniProtKB/Swiss-Prot
KEGG Report ssc:397437 UniProtKB/Swiss-Prot
NCBI Gene RHO ENTREZGENE
PANTHER OPSIN UniProtKB/Swiss-Prot
Pfam 7tm_1 UniProtKB/Swiss-Prot
  Rhodopsin_N UniProtKB/Swiss-Prot
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot
  OPSIN UniProtKB/Swiss-Prot
  RHODOPSIN UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
  OPSIN UniProtKB/Swiss-Prot
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt A0A4X1U875 ENTREZGENE, UniProtKB/TrEMBL
  O18766 ENTREZGENE, UniProtKB/Swiss-Prot
  Q71UZ8_PIG UniProtKB/TrEMBL
VGNC ID VGNC:92283 ENTREZGENE