ATM (ATM serine/threonine kinase) - Rat Genome Database

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Gene: ATM (ATM serine/threonine kinase) Sus scrofa
Analyze
Symbol: ATM
Name: ATM serine/threonine kinase
RGD ID: 13955321
Description: ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); histone H2AXS139 kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN brain development (ortholog); cellular response to ionizing radiation (ortholog); chromosome organization involved in meiotic cell cycle (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; nuclear factor kappa B signaling pathway; p38 MAPK signaling pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); adenocarcinoma (ortholog); adenoid cystic carcinoma (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); extrinsic component of synaptic vesicle membrane (ortholog); INTERACTS WITH caffeine; deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: A-T mutated homolog; ataxia telangiectasia mutated homolog; ataxia-telangiectasia mutated; serine-protein kinase ATM
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl936,620,657 - 36,759,552 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1936,620,656 - 36,759,555 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2940,746,630 - 40,837,766 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2940,926,043 - 40,945,434 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Acute Liver Failure  (ISO)
adenocarcinoma  (ISO)
adenoid cystic carcinoma  (ISO)
Alzheimer's disease  (ISO)
Arenaviridae infectious disease  (ISO)
arteriosclerosis  (ISO)
astroblastoma, MN1-altered  (ISO)
ataxia telangiectasia  (ISO)
Ataxia-Telangiectasia Variant  (ISO)
B-Cell Chronic Lymphocytic Leukemia  (ISO)
beta-ketothiolase deficiency  (ISO)
bilateral breast cancer  (ISO)
bile duct cancer  (ISO)
brain cancer  (ISO)
Brain Neoplasms  (ISO)
breast cancer  (ISO)
Breast Cancer, Familial  (ISO)
breast carcinoma  (ISO)
Breast Neoplasms  (ISO)
cataract  (ISO)
cerebellar ataxia  (ISO)
chromosome 11 partial duplication syndrome  (ISO)
clear cell renal cell carcinoma  (ISO)
colon cancer  (ISO)
colon carcinoma  (ISO)
Colonic Neoplasms  (ISO)
colorectal cancer  (ISO)
dilated cardiomyopathy  (ISO)
disease of cellular proliferation  (ISO)
endometrial cancer  (ISO)
endometrial carcinoma  (ISO)
endometrial serous adenocarcinoma  (ISO)
esophagus squamous cell carcinoma  (ISO)
Experimental Colitis  (ISO)
Familial Pancreatic Carcinoma  (ISO)
Familial Prostate Cancer  (ISO)
female breast cancer  (ISO)
Fibrosis  (ISO)
Gastro-Enteropancreatic Neuroendocrine Tumor  (ISO)
glioblastoma  (ISO)
Helicobacter Infections  (ISO)
hepatoblastoma  (ISO)
hepatocellular carcinoma  (ISO)
hereditary breast ovarian cancer syndrome  (ISO)
Hereditary Neoplastic Syndromes  (ISO)
herpes simplex virus keratitis  (ISO)
Herpesviridae Infections  (ISO)
high grade glioma  (ISO)
human immunodeficiency virus infectious disease  (ISO)
Hypercholesterolemia  (ISO)
IDH-mutant anaplastic astrocytoma  (ISO)
infertility  (ISO)
influenza A  (ISO)
Insulin Resistance  (ISO)
intellectual disability  (ISO)
Kidney Reperfusion Injury  (ISO)
Koolen de Vries syndrome  (ISO)
leukemia  (ISO)
liver cancer  (ISO)
liver cirrhosis  (ISO)
lung cancer  (ISO)
lung non-small cell carcinoma  (ISO)
lung small cell carcinoma  (ISO)
lung squamous cell carcinoma  (ISO)
lymphoma  (ISO)
Lynch syndrome 1  (ISO)
mantle cell lymphoma  (ISO)
melanoma  (ISO)
Metabolic Syndrome  (ISO)
microcephaly  (ISO)
multiple endocrine neoplasia type 1  (ISO)
multiple myeloma  (ISO)
myocardial infarction  (ISO)
nasopharynx carcinoma  (ISO)
oral mucosa leukoplakia  (ISO)
oral squamous cell carcinoma  (ISO)
osteoporosis  (ISO)
Otorhinolaryngologic Neoplasms  (ISO)
ovarian cancer  (ISO)
ovarian carcinoma  (ISO)
Ovarian Neoplasms  (ISO)
pancreatic cancer  (ISO)
pancreatic carcinoma  (ISO)
papillary thyroid carcinoma  (ISO)
Parkinson's disease  (ISO)
peripheral T-cell lymphoma  (ISO)
Pneumococcal Meningitis  (ISO)
polycythemia vera  (ISO)
pre-malignant neoplasm  (ISO)
Prenatal Exposure Delayed Effects  (ISO)
primary cutaneous T-cell non-Hodgkin lymphoma  (ISO)
prostate cancer  (ISO)
prostate carcinoma in situ  (ISO)
Prostatic Neoplasms  (ISO)
Radiation Pneumonitis  (ISO)
renal cell carcinoma  (ISO)
Renal Cell Carcinoma 1  (ISO)
Retroviridae Infections  (ISO)
Rhabdoviridae Infections  (ISO)
senile cataract  (ISO)
Sepsis  (ISO)
Spinal Cord Injuries  (ISO)
squamous cell carcinoma  (ISO)
status epilepticus  (ISO)
stomach cancer  (ISO)
Stomach Neoplasms  (ISO)
Streptococcus pneumonia  (ISO)
T-cell prolymphocytic leukemia  (ISO)
thyroid cancer  (ISO)
urinary bladder cancer  (ISO)
Urinary Bladder Neoplasm  (ISO)
uterine corpus cancer  (ISO)
Ventricular Dysfunction, Left  (ISO)
X-linked cardiac valvular dysplasia  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
caffeine  (EXP)
deoxynivalenol  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
brain development  (IEA,ISO)
cellular response to gamma radiation  (IEA)
cellular response to ionizing radiation  (ISO)
cellular response to nitrosative stress  (IEA)
cellular response to reactive oxygen species  (IEA)
cellular response to retinoic acid  (IEA)
cellular response to stress  (IEA)
cellular response to X-ray  (IEA)
chromatin remodeling  (IEA)
chromosome organization involved in meiotic cell cycle  (IEA,ISO)
determination of adult lifespan  (IEA,ISO)
DNA damage checkpoint signaling  (IBA,IEA,ISO,ISS)
DNA damage response  (IEA,ISO)
DNA double-strand break processing  (IEA)
DNA repair  (IEA,ISO)
double-strand break repair  (IBA,IEA,ISS)
double-strand break repair via homologous recombination  (IEA,ISO)
establishment of protein-containing complex localization to telomere  (IEA)
establishment of RNA localization to telomere  (IEA)
female gamete generation  (IEA,ISO)
female gonad development  (IEA,ISO)
female meiotic nuclear division  (IEA,ISO)
heart development  (IEA,ISO)
histone mRNA catabolic process  (IEA,ISS)
immune system process  (IEA,ISO)
intrinsic apoptotic signaling pathway in response to DNA damage  (IBA,IEA,ISO)
lipoprotein catabolic process  (IEA,ISO)
male meiotic nuclear division  (IEA,ISO)
meiotic telomere clustering  (IEA,ISO)
mitotic G2 DNA damage checkpoint signaling  (IEA)
mitotic spindle assembly checkpoint signaling  (IEA,ISS)
multicellular organism growth  (IEA,ISO)
negative regulation of B cell proliferation  (IEA)
negative regulation of telomere capping  (IEA)
negative regulation of TORC1 signaling  (IBA,IEA)
neuron apoptotic process  (IEA,ISO)
oocyte development  (IEA,ISO)
ovarian follicle development  (IEA,ISO)
peptidyl-serine autophosphorylation  (ISO)
peptidyl-serine phosphorylation  (ISO)
pexophagy  (IEA,ISS)
phosphatidylinositol-3-phosphate biosynthetic process  (IEA)
positive regulation of apoptotic process  (IEA)
positive regulation of cell adhesion  (IEA)
positive regulation of cell migration  (IEA)
positive regulation of DNA catabolic process  (ISO)
positive regulation of DNA damage response, signal transduction by p53 class mediator  (IEA)
positive regulation of double-strand break repair  (IEA)
positive regulation of gene expression  (IEA)
positive regulation of neuron apoptotic process  (IEA,ISO)
positive regulation of telomerase catalytic core complex assembly  (IEA)
positive regulation of telomere maintenance via telomerase  (IEA)
positive regulation of telomere maintenance via telomere lengthening  (IEA)
positive regulation of transcription by RNA polymerase II  (IEA)
post-embryonic development  (IEA,ISO)
pre-B cell allelic exclusion  (IEA,ISS)
protein autophosphorylation  (ISS)
protein phosphorylation  (ISO,ISS)
regulation of autophagy  (IEA)
regulation of cell cycle  (IEA)
regulation of microglial cell activation  (ISO)
regulation of telomere maintenance via telomerase  (IEA)
replicative senescence  (IEA)
response to hypoxia  (ISO)
response to ionizing radiation  (IEA,ISO,ISS)
signal transduction in response to DNA damage  (IEA,ISS)
somitogenesis  (IEA,ISO)
telomere maintenance  (IBA)
thymus development  (IEA,ISO)
translation  (IEA)
V(D)J recombination  (IEA,ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:16645841   PMID:17145712   PMID:17933474   PMID:22301074   PMID:25598069   PMID:26374845   PMID:30032202  


Genomics

Comparative Map Data
ATM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl936,620,657 - 36,759,552 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1936,620,656 - 36,759,555 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2940,746,630 - 40,837,766 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2940,926,043 - 40,945,434 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811108,223,067 - 108,369,102 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11108,222,804 - 108,369,102 (+)EnsemblGRCh38hg38GRCh38
GRCh3711108,093,794 - 108,239,829 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611107,598,769 - 107,745,036 (+)NCBINCBI36Build 36hg18NCBI36
Celera11105,248,510 - 105,394,764 (+)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11104,019,183 - 104,165,444 (+)NCBIHuRef
CHM1_111107,976,660 - 108,122,959 (+)NCBICHM1_1
T2T-CHM13v2.011108,230,362 - 108,376,596 (+)NCBIT2T-CHM13v2.0
Atm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39953,348,422 - 53,448,125 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl953,350,449 - 53,448,040 (-)EnsemblGRCm39 Ensembl
GRCm38953,437,122 - 53,536,828 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl953,439,149 - 53,536,740 (-)EnsemblGRCm38mm10GRCm38
MGSCv37953,245,227 - 53,344,776 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36953,201,763 - 53,298,968 (-)NCBIMGSCv36mm8
Celera950,696,862 - 50,796,451 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.12NCBI
Atm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8862,724,939 - 62,829,040 (-)NCBIGRCr8
mRatBN7.2853,828,741 - 53,932,773 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl853,831,093 - 53,932,437 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx859,356,470 - 59,457,803 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0857,635,498 - 57,736,825 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0855,499,734 - 55,601,064 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0858,015,938 - 58,119,973 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl858,015,940 - 58,120,045 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0856,598,503 - 56,703,115 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4856,894,746 - 56,996,565 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera853,321,802 - 53,423,212 (-)NCBICelera
Cytogenetic Map8q24NCBI
Atm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541210,426,135 - 10,530,545 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541210,422,753 - 10,531,406 (+)NCBIChiLan1.0ChiLan1.0
ATM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29108,968,082 - 109,114,865 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111110,061,127 - 110,207,606 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011103,109,979 - 103,256,405 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111106,584,228 - 106,728,457 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11106,584,228 - 106,727,041 (+)Ensemblpanpan1.1panPan2
ATM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1524,180,129 - 24,297,207 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl524,182,135 - 24,297,207 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha524,107,778 - 24,222,696 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0524,211,375 - 24,326,057 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl524,211,375 - 24,326,057 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1524,258,890 - 24,373,424 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0524,160,300 - 24,274,920 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0524,218,488 - 24,333,125 (-)NCBIUU_Cfam_GSD_1.0
Atm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494791,001,856 - 91,178,286 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936551359,362 - 532,211 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936551359,134 - 534,672 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1199,653,208 - 99,786,889 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl199,653,139 - 99,791,520 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604326,170,879 - 26,305,849 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247842,937,499 - 3,078,216 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247842,933,172 - 3,080,131 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATM
2244 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001123080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK390741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK394723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK396458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY587061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU464170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ642602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ642603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ646385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ646386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ646387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ646388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ646389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ646390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01100168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000016371   ⟹   ENSSSCP00000015931
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl936,620,658 - 36,759,552 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000055430   ⟹   ENSSSCP00000042060
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl936,620,658 - 36,759,554 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000065931   ⟹   ENSSSCP00000045453
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl936,620,658 - 36,759,552 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000078838   ⟹   ENSSSCP00000064219
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl936,625,400 - 36,630,783 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000106940   ⟹   ENSSSCP00000081357
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl936,620,657 - 36,637,678 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000106941   ⟹   ENSSSCP00000081358
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl936,620,671 - 36,637,678 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000106942   ⟹   ENSSSCP00000081359
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl936,620,798 - 36,637,678 (+)Ensembl
RefSeq Acc Id: NM_001123080   ⟹   NP_001116552
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,658 - 36,759,552 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101922   ⟹   XP_020957581
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,764 - 36,759,555 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101923   ⟹   XP_020957582
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,764 - 36,758,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101924   ⟹   XP_020957583
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,764 - 36,758,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101925   ⟹   XP_020957584
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,764 - 36,758,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101926   ⟹   XP_020957585
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,769 - 36,758,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101927   ⟹   XP_020957586
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,764 - 36,758,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101928   ⟹   XP_020957587
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,769 - 36,758,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101929   ⟹   XP_020957588
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,769 - 36,758,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101931   ⟹   XP_020957590
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,657 - 36,758,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101932   ⟹   XP_020957591
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,764 - 36,758,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101933   ⟹   XP_020957592
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,764 - 36,758,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101934   ⟹   XP_020957593
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,764 - 36,758,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101935   ⟹   XP_020957594
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,769 - 36,758,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101936   ⟹   XP_020957595
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1936,620,656 - 36,758,563 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001116552 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957581 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957582 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957583 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957584 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957585 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957586 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957587 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957588 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957590 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957591 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957592 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957593 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957594 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957595 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAT01608 (Get FASTA)   NCBI Sequence Viewer  
  ABG36769 (Get FASTA)   NCBI Sequence Viewer  
  ABG36770 (Get FASTA)   NCBI Sequence Viewer  
  ABG36771 (Get FASTA)   NCBI Sequence Viewer  
  ABG36772 (Get FASTA)   NCBI Sequence Viewer  
  ABG36773 (Get FASTA)   NCBI Sequence Viewer  
  ABG36774 (Get FASTA)   NCBI Sequence Viewer  
  ABG37112 (Get FASTA)   NCBI Sequence Viewer  
  ABG37113 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000015931
  ENSSSCP00000015931.3
  ENSSSCP00000064219.1
  ENSSSCP00015015959.1
  ENSSSCP00015016286.1
  ENSSSCP00025019084.1
  ENSSSCP00025019179.1
  ENSSSCP00025019374.1
  ENSSSCP00030022923.1
  ENSSSCP00030022968.1
  ENSSSCP00035017354.1
  ENSSSCP00035017368.1
  ENSSSCP00045046895.1
  ENSSSCP00045046999.1
  ENSSSCP00050043901.1
  ENSSSCP00050043911.1
  ENSSSCP00055015343.1
  ENSSSCP00055015538.1
  ENSSSCP00060018726.1
  ENSSSCP00065021175.1
  ENSSSCP00065021190.1
  ENSSSCP00070033565.1
GenBank Protein Q6PQD5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_020957595   ⟸   XM_021101936
- Peptide Label: isoform X4
- UniProtKB: A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957590   ⟸   XM_021101931
- Peptide Label: isoform X1
- UniProtKB: A0A8D0RPY3 (UniProtKB/TrEMBL),   F1SV20 (UniProtKB/TrEMBL),   A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001116552   ⟸   NM_001123080
- UniProtKB: Q6PQD5 (UniProtKB/Swiss-Prot),   A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957581   ⟸   XM_021101922
- Peptide Label: isoform X1
- UniProtKB: A0A8D0RPY3 (UniProtKB/TrEMBL),   F1SV20 (UniProtKB/TrEMBL),   A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957592   ⟸   XM_021101933
- Peptide Label: isoform X3
- UniProtKB: A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957591   ⟸   XM_021101932
- Peptide Label: isoform X2
- UniProtKB: A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957582   ⟸   XM_021101923
- Peptide Label: isoform X1
- UniProtKB: A0A8D0RPY3 (UniProtKB/TrEMBL),   F1SV20 (UniProtKB/TrEMBL),   A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957583   ⟸   XM_021101924
- Peptide Label: isoform X1
- UniProtKB: A0A8D0RPY3 (UniProtKB/TrEMBL),   F1SV20 (UniProtKB/TrEMBL),   A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957586   ⟸   XM_021101927
- Peptide Label: isoform X1
- UniProtKB: A0A8D0RPY3 (UniProtKB/TrEMBL),   F1SV20 (UniProtKB/TrEMBL),   A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957593   ⟸   XM_021101934
- Peptide Label: isoform X4
- UniProtKB: A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957584   ⟸   XM_021101925
- Peptide Label: isoform X1
- UniProtKB: A0A8D0RPY3 (UniProtKB/TrEMBL),   F1SV20 (UniProtKB/TrEMBL),   A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957585   ⟸   XM_021101926
- Peptide Label: isoform X1
- UniProtKB: A0A8D0RPY3 (UniProtKB/TrEMBL),   F1SV20 (UniProtKB/TrEMBL),   A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957587   ⟸   XM_021101928
- Peptide Label: isoform X1
- UniProtKB: A0A8D0RPY3 (UniProtKB/TrEMBL),   F1SV20 (UniProtKB/TrEMBL),   A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957588   ⟸   XM_021101929
- Peptide Label: isoform X1
- UniProtKB: A0A8D0RPY3 (UniProtKB/TrEMBL),   F1SV20 (UniProtKB/TrEMBL),   A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957594   ⟸   XM_021101935
- Peptide Label: isoform X4
- UniProtKB: A0A4X1UU05 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000064219   ⟸   ENSSSCT00000078838
Ensembl Acc Id: ENSSSCP00000015931   ⟸   ENSSSCT00000016371
Ensembl Acc Id: ENSSSCP00000045453   ⟸   ENSSSCT00000065931
Ensembl Acc Id: ENSSSCP00000042060   ⟸   ENSSSCT00000055430
Ensembl Acc Id: ENSSSCP00000081359   ⟸   ENSSSCT00000106942
Ensembl Acc Id: ENSSSCP00000081358   ⟸   ENSSSCT00000106941
Ensembl Acc Id: ENSSSCP00000081357   ⟸   ENSSSCT00000106940
Protein Domains
FAT   FATC   PI3K/PI4K catalytic   Telomere-length maintenance and DNA damage repair


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000025606 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015030479 UniProtKB/TrEMBL
  ENSSSCG00025032959 UniProtKB/TrEMBL
  ENSSSCG00030036273 UniProtKB/TrEMBL
  ENSSSCG00035032765 UniProtKB/TrEMBL
  ENSSSCG00045038218 UniProtKB/TrEMBL
  ENSSSCG00050073862 UniProtKB/TrEMBL
  ENSSSCG00055009952 UniProtKB/TrEMBL
  ENSSSCG00060032393 UniProtKB/TrEMBL
  ENSSSCG00065035957 UniProtKB/TrEMBL
  ENSSSCG00070019996 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016371 ENTREZGENE
  ENSSSCT00000016371.3 UniProtKB/TrEMBL
  ENSSSCT00000078838.2 UniProtKB/TrEMBL
  ENSSSCT00015040368.1 UniProtKB/TrEMBL
  ENSSSCT00015041216.1 UniProtKB/TrEMBL
  ENSSSCT00025044814.1 UniProtKB/TrEMBL
  ENSSSCT00025045013.1 UniProtKB/TrEMBL
  ENSSSCT00025045444.1 UniProtKB/TrEMBL
  ENSSSCT00030050416.1 UniProtKB/TrEMBL
  ENSSSCT00030050525.1 UniProtKB/TrEMBL
  ENSSSCT00035043396.1 UniProtKB/TrEMBL
  ENSSSCT00035043429.1 UniProtKB/TrEMBL
  ENSSSCT00045066175.1 UniProtKB/TrEMBL
  ENSSSCT00045066292.1 UniProtKB/TrEMBL
  ENSSSCT00050101039.1 UniProtKB/TrEMBL
  ENSSSCT00050101057.1 UniProtKB/TrEMBL
  ENSSSCT00055019453.1 UniProtKB/TrEMBL
  ENSSSCT00055019690.1 UniProtKB/TrEMBL
  ENSSSCT00060043883.1 UniProtKB/TrEMBL
  ENSSSCT00065048988.1 UniProtKB/TrEMBL
  ENSSSCT00065049017.1 UniProtKB/TrEMBL
  ENSSSCT00070040061.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1070.11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATM_plant UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FATC_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI3/4_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI3/4_kinase_cat_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI3/4_kinase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIK-rel_kinase_FAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIK_FAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIKKc_ATM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S21_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100101922 UniProtKB/Swiss-Prot
NCBI Gene ATM ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN KINASE ATM UniProtKB/Swiss-Prot
  SERINE/THREONINE-PROTEIN KINASE ATM UniProtKB/Swiss-Prot
  SERINE/THREONINE-PROTEIN KINASE ATM UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE ATM UniProtKB/TrEMBL
Pfam FAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FATC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI3_PI4_kinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FATC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI3_4_KINASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI3_4_KINASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI3_4_KINASE_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIBOSOMAL_S21 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FATC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI3Kc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1UU05 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QQ76_PIG UniProtKB/TrEMBL
  A0A8D0RPY3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WLE1_PIG UniProtKB/TrEMBL
  A0A8D0WNM6_PIG UniProtKB/TrEMBL
  A7IYP3_PIG UniProtKB/TrEMBL
  A7IYP4_PIG UniProtKB/TrEMBL
  A7IYP6_PIG UniProtKB/TrEMBL
  A7IYP8_PIG UniProtKB/TrEMBL
  A7IYQ0_PIG UniProtKB/TrEMBL
  ATM_PIG UniProtKB/Swiss-Prot
  F1SV20 ENTREZGENE, UniProtKB/TrEMBL
  Q6PQD5 ENTREZGENE
VGNC ID VGNC:108572 ENTREZGENE