HMGN3 (high mobility group nucleosomal binding domain 3) - Rat Genome Database

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Gene: HMGN3 (high mobility group nucleosomal binding domain 3) Sus scrofa
Analyze
Symbol: HMGN3
Name: high mobility group nucleosomal binding domain 3
RGD ID: 13943610
Description: ENCODES a protein that exhibits chromatin binding (inferred); nucleosomal DNA binding (inferred); INVOLVED IN positive regulation of DNA-binding transcription factor activity (ortholog); ASSOCIATED WITH maple syrup urine disease (ortholog); FOUND IN cytosol (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: high mobility group nucleosome-binding domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl186,954,465 - 86,987,460 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1186,954,468 - 86,987,465 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2197,725,921 - 97,758,953 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA)
cytosol  (ISO)
nucleoplasm  (IEA)
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17407547   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HMGN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl186,954,465 - 86,987,460 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1186,954,468 - 86,987,465 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2197,725,921 - 97,758,953 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HMGN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38679,201,245 - 79,234,682 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl679,201,245 - 79,234,689 (-)EnsemblGRCh38hg38GRCh38
GRCh37679,910,962 - 79,944,399 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36679,967,681 - 80,001,174 (-)NCBINCBI36Build 36hg18NCBI36
Build 34679,967,682 - 80,001,174NCBI
Celera680,298,225 - 80,331,717 (-)NCBICelera
Cytogenetic Map6q14.1NCBI
HuRef677,104,244 - 77,137,758 (-)NCBIHuRef
CHM1_1680,008,452 - 80,041,944 (-)NCBICHM1_1
T2T-CHM13v2.0680,378,935 - 80,412,370 (-)NCBIT2T-CHM13v2.0
Hmgn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39982,991,995 - 83,029,411 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl982,992,001 - 83,028,738 (-)EnsemblGRCm39 Ensembl
GRCm38983,109,942 - 83,147,358 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl983,109,948 - 83,146,685 (-)EnsemblGRCm38mm10GRCm38
MGSCv37983,003,549 - 83,040,214 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36982,906,666 - 82,943,322 (-)NCBIMGSCv36mm8
Celera980,206,588 - 80,244,118 (-)NCBICelera
Cytogenetic Map9E2NCBI
cM Map945.29NCBI
Hmgn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8892,902,555 - 92,939,980 (-)NCBIGRCr8
mRatBN7.2884,022,493 - 84,059,329 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl884,022,495 - 84,062,976 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx889,627,080 - 89,663,753 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0887,856,064 - 87,892,724 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0885,719,317 - 85,755,998 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0890,628,203 - 90,665,055 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl890,628,209 - 90,664,554 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0890,151,447 - 90,188,104 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4888,168,415 - 88,205,046 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1888,187,870 - 88,224,501 (-)NCBI
Celera883,680,164 - 83,716,759 (-)NCBICelera
Cytogenetic Map8q31NCBI
Hmgn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555027,037,126 - 7,064,053 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555027,037,126 - 7,064,333 (-)NCBIChiLan1.0ChiLan1.0
HMGN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2599,256,603 - 99,297,719 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1697,137,417 - 97,176,917 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0677,052,498 - 77,085,956 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1680,323,904 - 80,357,995 (-)NCBIpanpan1.1PanPan1.1panPan2
HMGN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11240,135,984 - 40,168,281 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1240,135,988 - 40,168,266 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1240,009,265 - 40,041,560 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01240,908,094 - 40,940,158 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1240,908,092 - 40,940,143 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11240,230,419 - 40,262,429 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01240,207,603 - 40,240,384 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01240,338,436 - 40,370,503 (-)NCBIUU_Cfam_GSD_1.0
Hmgn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494675,516,541 - 75,547,845 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651010,923,009 - 10,954,354 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651010,923,014 - 10,954,354 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HMGN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1133,909,460 - 3,943,339 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl133,909,430 - 3,942,394 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040180,133,659 - 180,165,973 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hmgn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248195,830,311 - 5,860,141 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248195,831,031 - 5,860,249 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HMGN3
672 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000004938   ⟹   ENSSSCP00000004821
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl186,954,482 - 86,987,458 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000045120   ⟹   ENSSSCP00000040880
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl186,954,465 - 86,987,460 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000055660   ⟹   ENSSSCP00000051903
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl186,953,923 - 86,987,461 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000062552   ⟹   ENSSSCP00000047094
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl186,954,529 - 86,987,460 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000066456   ⟹   ENSSSCP00000069651
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl186,953,923 - 86,987,465 (+)Ensembl
RefSeq Acc Id: NM_001244502   ⟹   NP_001231431
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1186,954,468 - 86,987,465 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005659420   ⟹   XP_005659477
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1186,954,469 - 86,986,975 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005659421   ⟹   XP_005659478
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1186,954,470 - 86,987,465 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005659422   ⟹   XP_005659479
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1186,954,472 - 86,987,465 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005659423   ⟹   XP_005659480
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1186,954,477 - 86,987,465 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001306102
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1186,954,471 - 86,987,465 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001231431   ⟸   NM_001244502
- Sequence:
RefSeq Acc Id: XP_005659477   ⟸   XM_005659420
- Peptide Label: isoform X1
- UniProtKB: A0A287AT06 (UniProtKB/TrEMBL),   A0A8D0PPW1 (UniProtKB/TrEMBL),   A0A8D1MQE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005659478   ⟸   XM_005659421
- Peptide Label: isoform X2
- UniProtKB: A0A287AAB5 (UniProtKB/TrEMBL),   A0A287AT06 (UniProtKB/TrEMBL),   A0A8D0PPW1 (UniProtKB/TrEMBL),   A0A8D1MQE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005659479   ⟸   XM_005659422
- Peptide Label: isoform X3
- UniProtKB: A0A8D0TBI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005659480   ⟸   XM_005659423
- Peptide Label: isoform X4
- UniProtKB: F1RQK7 (UniProtKB/TrEMBL),   A0A8D0TBI2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000051903   ⟸   ENSSSCT00000055660
Ensembl Acc Id: ENSSSCP00000040880   ⟸   ENSSSCT00000045120
Ensembl Acc Id: ENSSSCP00000069651   ⟸   ENSSSCT00000066456
Ensembl Acc Id: ENSSSCP00000047094   ⟸   ENSSSCT00000062552
Ensembl Acc Id: ENSSSCP00000004821   ⟸   ENSSSCT00000004938


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004470 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015066925 UniProtKB/TrEMBL
  ENSSSCG00025068859 UniProtKB/TrEMBL
  ENSSSCG00035041857 UniProtKB/TrEMBL
  ENSSSCG00040059899 UniProtKB/TrEMBL
  ENSSSCG00045019916 UniProtKB/TrEMBL
  ENSSSCG00050048021 UniProtKB/TrEMBL
  ENSSSCG00055007463 UniProtKB/TrEMBL
  ENSSSCG00060040720 UniProtKB/TrEMBL
  ENSSSCG00065069113 UniProtKB/TrEMBL
  ENSSSCG00070021129 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004938 ENTREZGENE
  ENSSSCT00000004938.5 UniProtKB/TrEMBL
  ENSSSCT00000045120 ENTREZGENE
  ENSSSCT00000045120.2 UniProtKB/TrEMBL
  ENSSSCT00000062552.3 UniProtKB/TrEMBL
  ENSSSCT00015089592.1 UniProtKB/TrEMBL
  ENSSSCT00015089744.1 UniProtKB/TrEMBL
  ENSSSCT00015089839.1 UniProtKB/TrEMBL
  ENSSSCT00015089916.1 UniProtKB/TrEMBL
  ENSSSCT00015090018.1 UniProtKB/TrEMBL
  ENSSSCT00025094751.1 UniProtKB/TrEMBL
  ENSSSCT00035055626.1 UniProtKB/TrEMBL
  ENSSSCT00040081436.1 UniProtKB/TrEMBL
  ENSSSCT00040081492.1 UniProtKB/TrEMBL
  ENSSSCT00040081613.1 UniProtKB/TrEMBL
  ENSSSCT00040081673.1 UniProtKB/TrEMBL
  ENSSSCT00045033918.1 UniProtKB/TrEMBL
  ENSSSCT00045033986.1 UniProtKB/TrEMBL
  ENSSSCT00045034030.1 UniProtKB/TrEMBL
  ENSSSCT00045034074.1 UniProtKB/TrEMBL
  ENSSSCT00045034146.1 UniProtKB/TrEMBL
  ENSSSCT00050065429.1 UniProtKB/TrEMBL
  ENSSSCT00050065439.1 UniProtKB/TrEMBL
  ENSSSCT00050065453.1 UniProtKB/TrEMBL
  ENSSSCT00050065458.1 UniProtKB/TrEMBL
  ENSSSCT00055014482.1 UniProtKB/TrEMBL
  ENSSSCT00055014525.1 UniProtKB/TrEMBL
  ENSSSCT00055014560.1 UniProtKB/TrEMBL
  ENSSSCT00055014598.1 UniProtKB/TrEMBL
  ENSSSCT00060055174.1 UniProtKB/TrEMBL
  ENSSSCT00065094870.1 UniProtKB/TrEMBL
  ENSSSCT00070041952.1 UniProtKB/TrEMBL
InterPro HMGN_fam UniProtKB/TrEMBL
NCBI Gene HMGN3 ENTREZGENE
PANTHER NONHISTONE CHROMOSOMAL PROTEIN HMG UniProtKB/TrEMBL
  PTHR23087:SF2 UniProtKB/TrEMBL
Pfam HMG14_17 UniProtKB/TrEMBL
PRINTS NONHISHMG17 UniProtKB/TrEMBL
PROSITE HMG14_17 UniProtKB/TrEMBL
SMART HMG17 UniProtKB/TrEMBL
UniProt A0A287AAB5 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AT06 ENTREZGENE
  A0A4X1V2B6_PIG UniProtKB/TrEMBL
  A0A8D0JU41_PIG UniProtKB/TrEMBL
  A0A8D0PPW1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0TBI2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CV03_PIG UniProtKB/TrEMBL
  A0A8D1FBE4_PIG UniProtKB/TrEMBL
  A0A8D1MQE2 ENTREZGENE, UniProtKB/TrEMBL
  F1RQK7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287AT06 UniProtKB/TrEMBL
VGNC ID VGNC:88908 ENTREZGENE