ATP4A (ATPase H+/K+ transporting subunit alpha) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ATP4A (ATPase H+/K+ transporting subunit alpha) Sus scrofa
Analyze
Symbol: ATP4A
Name: ATPase H+/K+ transporting subunit alpha
RGD ID: 13931769
Description: ENCODES a protein that exhibits magnesium ion binding; potassium ion binding; INVOLVED IN potassium ion transmembrane transport; pH reduction (ortholog); regulation of proton transport (ortholog); PARTICIPATES IN cimetidine pharmacodynamics pathway; esomeprazole pharmacodynamics pathway; esomeprazole pharmacokinetics pathway; ASSOCIATED WITH Brugada syndrome 5 (ortholog); dystonia (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN potassium:proton exchanging ATPase complex; INTERACTS WITH ebselen; formic acid
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: (H+ + K+)-ATPase; ATPase H+/K+ transporting alpha subunit; ATPase, H+/K+ exchanging, alpha polypeptide; gastric H(+)/K(+) ATPase subunit alpha; potassium-transporting ATPase alpha chain 1; proton pump
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl644,984,233 - 44,997,552 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1644,984,014 - 45,057,796 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,444,521 - 40,454,205 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
ebselen  (EXP)
formic acid  (EXP)

References
Additional References at PubMed
PMID:1720615   PMID:2848518   PMID:3017315   PMID:7797539   PMID:8886014   PMID:16169880   PMID:16331993   PMID:16614409   PMID:18276159   PMID:20826127   PMID:22301074   PMID:23091039  
PMID:25231997   PMID:29618813   PMID:30032202   PMID:30143663   PMID:31436534  


Genomics

Comparative Map Data
ATP4A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl644,984,233 - 44,997,552 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1644,984,014 - 45,057,796 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,444,521 - 40,454,205 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,550,031 - 35,563,658 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,550,031 - 35,563,658 (-)EnsemblGRCh38hg38GRCh38
GRCh371936,040,933 - 36,054,560 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,732,935 - 40,746,400 (-)NCBINCBI36Build 36hg18NCBI36
Build 341940,732,934 - 40,746,400NCBI
Celera1932,754,548 - 32,768,023 (-)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,546,540 - 32,560,013 (-)NCBIHuRef
CHM1_11936,042,661 - 36,056,126 (-)NCBICHM1_1
T2T-CHM13v2.01938,094,977 - 38,108,614 (-)NCBIT2T-CHM13v2.0
Atp4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,411,634 - 30,424,959 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,411,634 - 30,424,959 (+)EnsemblGRCm39 Ensembl
GRCm38730,712,209 - 30,725,534 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,712,209 - 30,725,534 (+)EnsemblGRCm38mm10GRCm38
MGSCv37731,497,251 - 31,510,553 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,421,112 - 30,433,944 (+)NCBIMGSCv36mm8
Celera725,294,279 - 25,307,645 (+)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.2NCBI
Atp4a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,089,122 - 95,102,277 (+)NCBIGRCr8
mRatBN7.2185,961,607 - 85,974,972 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,961,708 - 85,974,844 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,377,251 - 91,390,049 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,843,427 - 99,856,225 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,135,546 - 93,148,344 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,162,700 - 89,175,504 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,162,639 - 89,175,811 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,317,629 - 90,330,433 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,756,388 - 85,769,192 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.152,286,438 - 2,286,714 (+)NCBI
Celera180,333,302 - 80,346,109 (+)NCBICelera
RH 2.0 Map1561.1RGD
Cytogenetic Map1q21NCBI
Atp4a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554684,778,295 - 4,842,366 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554684,778,327 - 4,844,498 (-)NCBIChiLan1.0ChiLan1.0
ATP4A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,562,807 - 41,577,373 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,546,280 - 43,560,837 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,496,614 - 32,510,649 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,233,630 - 41,246,893 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,234,052 - 41,248,628 (-)Ensemblpanpan1.1panPan2
ATP4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,103,937 - 117,116,779 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1117,103,620 - 117,116,778 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,507,704 - 116,519,874 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,705,000 - 117,716,940 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,604,904 - 117,716,954 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,267,860 - 117,280,034 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,893,656 - 116,905,826 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,949,139 - 117,961,076 (+)NCBIUU_Cfam_GSD_1.0
Atp4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,831,472 - 10,843,738 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936570802,170 - 814,056 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936570802,170 - 815,023 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,475,352 - 30,489,500 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,475,764 - 30,489,080 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660738,269,571 - 8,283,253 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp4a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,033,020 - 8,060,292 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247948,046,638 - 8,059,359 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP4A
1424 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 3 18 3 5 12 11 18 2 6 1

Sequence


Ensembl Acc Id: ENSSSCT00000003207   ⟹   ENSSSCP00000003126
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl644,984,233 - 44,997,552 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000068050   ⟹   ENSSSCP00000069966
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl644,983,934 - 44,997,750 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000079801   ⟹   ENSSSCP00000068072
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl644,983,934 - 45,057,772 (-)Ensembl
RefSeq Acc Id: NM_214291   ⟹   NP_999456
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1644,984,233 - 44,997,552 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093567   ⟹   XP_020949226
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1644,984,014 - 45,057,790 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093568   ⟹   XP_020949227
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1644,984,015 - 45,057,796 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093569   ⟹   XP_020949228
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1644,984,015 - 45,057,796 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093570   ⟹   XP_020949229
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1644,984,015 - 45,057,796 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020949226   ⟸   XM_021093567
- Peptide Label: isoform X1
- UniProtKB: A0A8D1T4M7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949228   ⟸   XM_021093569
- Peptide Label: isoform X2
- UniProtKB: A0A8D1S9B1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949229   ⟸   XM_021093570
- Peptide Label: isoform X2
- UniProtKB: A0A8D1S9B1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949227   ⟸   XM_021093568
- Peptide Label: isoform X2
- UniProtKB: A0A8D1S9B1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_999456   ⟸   NM_214291
- UniProtKB: P19156 (UniProtKB/Swiss-Prot),   A0A4X1TH48 (UniProtKB/TrEMBL),   F1RM59 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000069966   ⟸   ENSSSCT00000068050
Ensembl Acc Id: ENSSSCP00000068072   ⟸   ENSSSCT00000079801
Ensembl Acc Id: ENSSSCP00000003126   ⟸   ENSSSCT00000003207

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002902 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015021937 UniProtKB/TrEMBL
  ENSSSCG00025049023 UniProtKB/TrEMBL
  ENSSSCG00030023390 UniProtKB/TrEMBL
  ENSSSCG00035022711 UniProtKB/TrEMBL
  ENSSSCG00040068323 UniProtKB/TrEMBL
  ENSSSCG00050015528 UniProtKB/TrEMBL
  ENSSSCG00055028440 UniProtKB/TrEMBL
  ENSSSCG00060060250 UniProtKB/TrEMBL
  ENSSSCG00065058730 UniProtKB/TrEMBL
  ENSSSCG00070009871 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003207 ENTREZGENE
  ENSSSCT00000003207.3 UniProtKB/TrEMBL
  ENSSSCT00015029060.1 UniProtKB/TrEMBL
  ENSSSCT00015029242.1 UniProtKB/TrEMBL
  ENSSSCT00025066746.1 UniProtKB/TrEMBL
  ENSSSCT00025067121.1 UniProtKB/TrEMBL
  ENSSSCT00025067405.1 UniProtKB/TrEMBL
  ENSSSCT00025067715.1 UniProtKB/TrEMBL
  ENSSSCT00030032463.1 UniProtKB/TrEMBL
  ENSSSCT00030032503.1 UniProtKB/TrEMBL
  ENSSSCT00030032514.1 UniProtKB/TrEMBL
  ENSSSCT00030032555.1 UniProtKB/TrEMBL
  ENSSSCT00030032562.1 UniProtKB/TrEMBL
  ENSSSCT00035029666.1 UniProtKB/TrEMBL
  ENSSSCT00035029676.1 UniProtKB/TrEMBL
  ENSSSCT00035029695.1 UniProtKB/TrEMBL
  ENSSSCT00035029701.1 UniProtKB/TrEMBL
  ENSSSCT00040093510.1 UniProtKB/TrEMBL
  ENSSSCT00040093719.1 UniProtKB/TrEMBL
  ENSSSCT00040094005.1 UniProtKB/TrEMBL
  ENSSSCT00040094191.1 UniProtKB/TrEMBL
  ENSSSCT00050021026.1 UniProtKB/TrEMBL
  ENSSSCT00050021058.1 UniProtKB/TrEMBL
  ENSSSCT00050021061.1 UniProtKB/TrEMBL
  ENSSSCT00050021098.1 UniProtKB/TrEMBL
  ENSSSCT00050021113.1 UniProtKB/TrEMBL
  ENSSSCT00055056373.1 UniProtKB/TrEMBL
  ENSSSCT00055056478.1 UniProtKB/TrEMBL
  ENSSSCT00055056560.1 UniProtKB/TrEMBL
  ENSSSCT00060082193.1 UniProtKB/TrEMBL
  ENSSSCT00060082227.1 UniProtKB/TrEMBL
  ENSSSCT00060082262.1 UniProtKB/TrEMBL
  ENSSSCT00060082399.1 UniProtKB/TrEMBL
  ENSSSCT00065080593.1 UniProtKB/TrEMBL
  ENSSSCT00065080621.1 UniProtKB/TrEMBL
  ENSSSCT00065080632.1 UniProtKB/TrEMBL
  ENSSSCT00070019146.1 UniProtKB/TrEMBL
  ENSSSCT00070019161.1 UniProtKB/TrEMBL
  ENSSSCT00070019175.1 UniProtKB/TrEMBL
  ENSSSCT00070019195.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ATPase_P-typ_cation-transptr_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_H/K-transp_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cation_transp_ATPase_P-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-type_ATPase_IIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397552 UniProtKB/Swiss-Prot
NCBI Gene ATP4A ENTREZGENE
PANTHER POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cation_ATPase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cation_ATPase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  H-K_ATPase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAKATPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Cation_ATPase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81653 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81660 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81665 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1TH31_PIG UniProtKB/TrEMBL
  A0A4X1TH48 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TL87_PIG UniProtKB/TrEMBL
  A0A4X1TLH7_PIG UniProtKB/TrEMBL
  A0A8D0W462_PIG UniProtKB/TrEMBL
  A0A8D1S281_PIG UniProtKB/TrEMBL
  A0A8D1S9B1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1T4M7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1T5F6_PIG UniProtKB/TrEMBL
  A0A8D1ZHG4_PIG UniProtKB/TrEMBL
  ATP4A_PIG UniProtKB/Swiss-Prot
  F1RM59 ENTREZGENE, UniProtKB/TrEMBL
  P19156 ENTREZGENE
VGNC ID VGNC:85654 ENTREZGENE