LOC100739754 (disintegrin and metalloproteinase domain-containing protein 20) - Rat Genome Database

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Gene: LOC100739754 (disintegrin and metalloproteinase domain-containing protein 20) Sus scrofa
Analyze
Symbol: LOC100739754 (Ensembl: ADAM20)
Name: disintegrin and metalloproteinase domain-containing protein 20 (Ensembl:ADAM metallopeptidase domain 20)
RGD ID: 13931651
Description: ENCODES a protein that exhibits metal ion binding (inferred); metalloendopeptidase activity (inferred); INVOLVED IN proteolysis (inferred); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADAM metallopeptidase domain 20; ADAM20
RGD Orthologs
Human
Mouse
Dog
Squirrel
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl794,127,736 - 94,129,904 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1794,125,901 - 94,131,479 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27100,392,940 - 100,439,037 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100739754
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl794,127,736 - 94,129,904 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1794,125,901 - 94,131,479 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27100,392,940 - 100,439,037 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADAM20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381470,522,358 - 70,579,452 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1470,522,358 - 70,535,015 (-)EnsemblGRCh38hg38GRCh38
GRCh371470,989,075 - 71,001,721 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361470,058,831 - 70,071,485 (-)NCBINCBI36Build 36hg18NCBI36
Build 341470,058,831 - 70,071,485NCBI
Celera1451,053,033 - 51,065,687 (-)NCBICelera
Cytogenetic Map14q24.2NCBI
HuRef1451,157,745 - 51,170,399 (-)NCBIHuRef
CHM1_11470,927,229 - 70,939,873 (-)NCBICHM1_1
T2T-CHM13v2.01464,728,380 - 64,785,473 (-)NCBIT2T-CHM13v2.0
Adam20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39841,246,310 - 41,250,379 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl841,246,310 - 41,250,340 (+)EnsemblGRCm39 Ensembl
GRCm38840,793,273 - 40,797,342 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl840,793,273 - 40,797,303 (+)EnsemblGRCm38mm10GRCm38
MGSCv37841,878,627 - 41,882,657 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36842,293,672 - 42,295,954 (+)NCBIMGSCv36mm8
Celera843,426,818 - 43,430,857 (+)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.89NCBI
ADAM20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1844,263,467 - 44,266,287 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl844,264,008 - 44,266,287 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha843,928,823 - 43,931,643 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0844,487,859 - 44,490,680 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl844,488,401 - 44,490,680 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1844,139,990 - 44,142,813 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0844,186,840 - 44,189,658 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0844,547,780 - 44,550,604 (-)NCBIUU_Cfam_GSD_1.0
LOC101958461
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864031,891,083 - 31,926,366 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936488142,777 - 145,399 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0

Variants

.
Variants in LOC100739754
24 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
3 1 10 2 2 5 6 10 2 4 1

Sequence


Ensembl Acc Id: ENSSSCT00000057641   ⟹   ENSSSCP00000036851
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl794,127,736 - 94,129,904 (-)Ensembl
RefSeq Acc Id: XM_021099415   ⟹   XP_020955074
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1794,125,901 - 94,131,479 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020955074 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000036851
  ENSSSCP00000036851.2
  ENSSSCP00035011276.1
  ENSSSCP00070022348.1
RefSeq Acc Id: XP_020955074   ⟸   XM_021099415
- UniProtKB: A0A4X1TY34 (UniProtKB/TrEMBL),   A0A286ZYY7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000036851   ⟸   ENSSSCT00000057641
Protein Domains
Disintegrin   EGF-like   Peptidase M12B


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000034126 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035022379 UniProtKB/TrEMBL
  ENSSSCG00070013770 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000057641 ENTREZGENE
  ENSSSCT00000057641.2 UniProtKB/TrEMBL
  ENSSSCT00035029202.1 UniProtKB/TrEMBL
  ENSSSCT00070026874.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.390.10 UniProtKB/TrEMBL
  4.10.70.10 UniProtKB/TrEMBL
InterPro ADAM_Cys-rich UniProtKB/TrEMBL
  Disintegrin_CS UniProtKB/TrEMBL
  Disintegrin_dom UniProtKB/TrEMBL
  Disintegrin_dom_sf UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  MetalloPept_cat_dom_sf UniProtKB/TrEMBL
  Peptidase_M12B UniProtKB/TrEMBL
  Peptidase_M12B_N UniProtKB/TrEMBL
  Reprolysin_adamalysin UniProtKB/TrEMBL
NCBI Gene LOC100739754 ENTREZGENE
PANTHER ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN UniProtKB/TrEMBL
  DISINTEGRIN AND METALLOPROTEINASE DOMAIN-CONTAINING PROTEIN 20 UniProtKB/TrEMBL
Pfam ADAM_CR UniProtKB/TrEMBL
  Disintegrin UniProtKB/TrEMBL
  Pep_M12B_propep UniProtKB/TrEMBL
  Reprolysin UniProtKB/TrEMBL
PRINTS DISINTEGRIN UniProtKB/TrEMBL
PROSITE ADAM_MEPRO UniProtKB/TrEMBL
  DISINTEGRIN_1 UniProtKB/TrEMBL
  DISINTEGRIN_2 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
SMART ACR UniProtKB/TrEMBL
  DISIN UniProtKB/TrEMBL
Superfamily-SCOP Metalloproteases ('zincins'), catalytic domain UniProtKB/TrEMBL
  SSF57552 UniProtKB/TrEMBL
UniProt A0A286ZYY7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TY34 ENTREZGENE, UniProtKB/TrEMBL