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Gene: CCT2 (chaperonin containing TCP1 subunit 2) Sus scrofa

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Symbol:

CCT2

Name:

chaperonin containing TCP1 subunit 2

RGD ID:

13924788

Description:

ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ATP-dependent protein folding chaperone (inferred); INVOLVED IN positive regulation of protein localization to Cajal body (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); Leber congenital amaurosis (ortholog); osteoporosis (ortholog); FOUND IN cell body (inferred); chaperonin-containing T-complex (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

T-complex protein 1 subunit beta

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	33,858,572 - 33,873,523 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	33,858,514 - 33,873,596 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	36,457,610 - 36,471,587 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

fundus dystrophy (ISO)

Leber congenital amaurosis (ISO)

osteoporosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

binding of sperm to zona pellucida (IEA)

chaperone mediated protein folding independent of cofactor (IEA)

chaperone-mediated protein complex assembly (IEA)

chaperone-mediated protein folding (IEA)

positive regulation of protein localization to Cajal body (ISO)

positive regulation of telomerase RNA localization to Cajal body (IEA)

positive regulation of telomere maintenance via telomerase (IEA)

protein folding (IBA,IEA)

protein stabilization (IEA)

scaRNA localization to Cajal body (IEA)

Cellular Component

cell body (IEA)

chaperonin-containing T-complex (IBA,IEA)

cytoplasm (IEA)

cytosol (IEA)

microtubule (IEA)

zona pellucida receptor complex (IEA)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IEA)

ATP-dependent protein folding chaperone (IEA)

nucleotide binding (IEA)

protein binding (ISO)

protein folding chaperone (IEA)

ubiquitin protein ligase binding (IEA)

unfolded protein binding (IBA,IEA)

References

Additional References at PubMed

PMID:8889548	PMID:14681463	PMID:17145712	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CCT2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	33,858,572 - 33,873,523 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	33,858,514 - 33,873,596 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	36,457,610 - 36,471,587 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCT2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	69,585,459 - 69,601,570 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	69,585,426 - 69,601,570 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	69,979,239 - 69,995,350 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	68,265,475 - 68,281,624 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	68,265,474 - 68,281,624	NCBI
Celera	12	69,642,857 - 69,659,010 (+)	NCBI		Celera
Cytogenetic Map	12	q15	NCBI
HuRef	12	67,028,675 - 67,044,820 (+)	NCBI		HuRef
CHM1_1	12	69,947,631 - 69,963,780 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	69,564,374 - 69,580,485 (+)	NCBI		T2T-CHM13v2.0

Cct2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	116,886,902 - 116,899,757 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	116,886,906 - 116,899,719 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	117,050,997 - 117,063,852 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	117,051,001 - 117,063,814 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	116,488,054 - 116,500,870 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	116,455,109 - 116,467,875 (-)	NCBI		MGSCv36	mm8
Celera	10	118,994,151 - 119,006,966 (-)	NCBI		Celera
Cytogenetic Map	10	D2	NCBI
cM Map	10	65.07	NCBI

Cct2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	54,578,654 - 54,591,428 (-)	NCBI		GRCr8
mRatBN7.2	7	52,692,725 - 52,705,478 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	52,692,725 - 52,706,944 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	54,599,478 - 54,612,221 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	56,802,584 - 56,815,327 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	56,580,484 - 56,593,227 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	60,106,532 - 60,122,779 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	60,109,974 - 60,122,805 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	60,106,598 - 60,122,867 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	56,391,341 - 56,404,084 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	56,412,071 - 56,424,814 (-)	NCBI
Celera	7	49,468,323 - 49,481,066 (-)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

Cct2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	9,892,116 - 9,904,407 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	9,892,089 - 9,904,407 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCT2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	77,617,597 - 77,633,554 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	77,613,995 - 77,629,952 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	67,113,221 - 67,128,159 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	69,883,710 - 69,898,671 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	69,883,710 - 69,898,671 (+)	Ensembl	panpan1.1		panPan2

CCT2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	11,560,287 - 11,586,559 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	11,560,396 - 11,578,433 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	11,492,095 - 11,518,353 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	11,683,661 - 11,709,923 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	11,683,710 - 11,701,919 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	11,550,671 - 11,576,938 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	11,797,739 - 11,824,127 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	11,920,916 - 11,939,358 (+)	NCBI		UU_Cfam_GSD_1.0

Cct2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	46,673,102 - 46,693,918 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936545	7,415,753 - 7,439,800 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936545	7,416,257 - 7,436,024 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCT2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	65,213,992 - 65,230,318 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	65,214,060 - 65,230,379 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	180,459,300 - 180,475,791 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cct2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	28,198,475 - 28,217,158 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624750	28,202,524 - 28,217,223 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CCT2
360 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001170520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021090963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB527071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AEMK02000033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK231036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK238849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK390346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK399449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK399606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK400675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF713089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU442731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU915502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01047300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000000535 ⟹ ENSSSCP00000000527

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	33,858,572 - 33,873,523 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000084498 ⟹ ENSSSCP00000060104

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	33,858,572 - 33,873,523 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000087484 ⟹ ENSSSCP00000065227

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	33,859,010 - 33,871,384 (+)	Ensembl

RefSeq Acc Id:

NM_001170520 ⟹ NP_001163991

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	33,858,537 - 33,873,596 (+)	NCBI

Sequence:

show sequence

CCCCCTGCGGGAGAGCGTGTGGCGTCACTTCCGGCCTCTTTTCCCTCTGGACCGGATCGCGAGC
TGTGAGGGGTGCGCGTGTGTGCCGAACTCCTCGGAACCATGGCGTCCCTTTCCCTGGCACCTGT
TAATATCTTCAAGGCTGGGGCTGATGAAGAGAGAGCAGAGACAGCTCGTCTGTCCTCTTTTATT
GGTGCCATCGCTATTGGAGACTTGGTAAAGAGCACGTTGGGACCCAAGGGCATGGATAAAATTC
TATTAAGCAGTGGACGAGATGCTTCTCTTATGGTAACCAATGATGGTGCAACTATTCTGAAAAA
CATTGGTGTGGACAATCCAGCTGCTAAAGTTTTAGTTGACATGTCAAGGGTTCAAGATGATGAA
GTTGGCGATGGCACTACCTCTGTTACTGTTCTTGCAGCTGAATTACTAAGGGAAGCAGAATCTT
TAATTGCAAAAAAGATTCATCCACAGACCATTATTGCTGGTTGGAGAGAAGCCACCAAGGCAGC
AAGACAGGCTCTGTTGAATTCTGCAGTTGACCATGGATCTGATGAAGTTAAATTCCGTCAAGAT
TTAATGAACATTGCAGGAACAACATTATCCTCAAAACTTCTCACTCACCACAAAGACCACTTCA
CTAAGTTAGCTGTAGAAGCTGTTCTCAGACTGAAAGGCTCTGGTAATCTGGAGGCAATTCATGT
CATCAAGAAGCTCGGAGGAAGTCTGGCAGATTCCTATTTAGATGAAGGCTTTCTGTTGGATAAA
AAAATTGGAGTAAATCAACCAAAGCGAATTGAAAATGCTAAAATTCTTATTGCAAATACTGGTA
TGGATACAGATAAAATAAAGATATTTGGTTCCAGGGTGAGAGTTGATTCTACAGCAAAGGTTGC
AGAAATAGAACATGCAGAAAAGGAAAAAATGAAGGAGAAAGTTGAACGTATTCTTAAGCATGGG
ATAAACTGCTTTATTAACAGGCAGTTAATTTATAATTATCCTGAACAGCTCTTTGGTGCTGCTG
GTGTTATGGCTATTGAGCACGCAGATTTTGCAGGTGTGGAACGCCTTGCTCTTGTCACAGGTGG
TGAAATTGCATCTACCTTTGACCACCCAGAGCTAGTGAAGCTTGGAAGTTGCAAACTTATTGAG
GAAGTTATGATTGGAGAAGACAAACTCATTCACTTCTCTGGGGTAGCCCTCGGTGAGGCTTGCA
CCATTGTTTTACGTGGTGCCACTCAACAAATTTTAGATGAAGCAGAAAGATCTTTGCATGATGC
TCTTTGTGTTCTTGCCCAAACTGTGAAAGATTCTAGAACAGTTTATGGAGGAGGGTGTTCTGAG
ATGCTCATGGCTCATGCTGTGACACAGCTTGCCAATAGAACACCAGGCAAAGAAGCTGTTGCAA
TGGAGTCTTATGCTAAAGCCCTGAGAATGTTGCCAACTATCATAGCTGACAATGCAGGCTATGA
TAGTGCAGATCTGGTTGCACAGCTCCGAGCTGCCCATAGTGAAGGCAATACAACTGCTGGACTG
GATATGAAGGAAGGTACCATTGGAGATATGGCAGTACTGGGTATAACAGAAAGTTTCCAAGTGA
AACGACAAGTTCTTTTAAGTGCAGCTGAAGCAGCAGAAGTGATTCTACGTGTGGACAACATTAT
CAAAGCAGCACCACGGAAACGTGTCCCTGATCACCACCCCTGTTAAGCATTCCCGTATACTGTT
GAGCTCTTGGACCAGTTCATAGCAAAAGTGCATTTGAAAGACTTCAGCCTCCTGAAAGAAGACT
AGAAACGAAGTTTATCTGTGGCTATTATATCCTTAAGTTTGAACATTTAACTGACCTCCTGTTT
TAACATGGGTCTAATTTATTGCTGTTTCATTTTCCATAAAATTCAGTTGATTTAAGAATTTATT
TCTCATACTGTGCATCAAAATAAAAATTGGAACAATTATTTAGTTCTTACTTGAAAAAAAAAAA
AAAAAAA

hide sequence

RefSeq Acc Id:

XM_021090963 ⟹ XP_020946622

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	33,858,514 - 33,873,596 (+)	NCBI

Sequence:

show sequence

GCCGCGCGCCGGCCCGGGCTCCGCCCCCTGCGGGAGAGCGTGTGGCGTCACTTCCGGCCTCTTT
TCCCTCTGGACCGGATCGCGAGCTGTGAGGGGTGCGCGTGTGTACCGAACTCCTCGGAACCATG
GCGTCCCTTTCCCTGGCACCTGTTAATATCTTCAAGGCTGGGGCTGATGAAGAGAGAGCAGAGA
CAGCTCGTCTGTCCTCTTTTATTGGTGCCATCGCTATTGGAGACTTGGTAAAGAGCACGTTGGG
ACCCAAGGGCATGGATAAAATTCTATTAAGCAGTGGACGAGATGCTTCTCTTATGGTAACCAAT
GATGGTGCAACTATTCTGAAAAACATTGGTGTGGACAATCCAGCTGCTAAAGTTTTAGTTGACA
TGTCAAGGGTTCAAGATGATGAAGTTGGCGATGGCACTACCTCTGTTACTGTTCTTGCAGCTGA
ATTACTAAGGGAAGCAGAATCTTTAATTGCAAAAAAGATTCATCCACAGACCATTATTGCTGGT
TGGAGAGAAGCCACCAAGGCAGCAAGACAGGCTCTGTTGAATTCTGCAGTTGACCATGGATCTG
ATGAAGTTAAATTCCGTCAAGATTTAATGAACATTGCAGGAACAACATTATCCTCAAAACTTCT
CACTCACCACAAAGACCACTTCACTAAGTTAGCTGTAGAAGCTGTTCTCAGACTGAAAGGCTCT
GGTAATCTGGAGGCAATTCATGTCATCAAGAAGCTCGGAGGAAGTCTGGCAGATTCCTATTTAG
ATGAAGGCTTTCTGTTGGATAAAAAAATTGGAGTAAATCAACCAAAGCGAATTGAAAATGCTAA
AATTCTTATTGCAAATACTGGTATGGATACAGATAAAATAAAGATATTTGGTTCCAGGGTGAGA
GTTGATTCTACAGCAAAGGTTGCAGAAATAGAACATGCAGAAAAGGAAAAAATGAAGGAGAAAG
TTGAACGTATTCTTAAGCATGGGATAAACTGCTTTATTAACAGGCAGTTAATTTATAATTATCC
TGAACAGCTCTTTGGTGCTGCTGGTGTTATGGCTATTGAGCACGCAGATTTTGCAGGTGTGGAA
CGCCTTGCTCTTGTCACAGGTGGTGAAATTGCATCTACCTTTGACCACCCAGAGCTAGTGAAGC
TTGGAAGTTGCAAACTTATTGAGGAAGTTATGATTGGAGAAGACAAACTCATTCACTTCTCTGG
GGTAGCCCTGGTGAGTGATTATGTAGATCCTGGTGAGGCTTGCACCATTGTTTTACGTGGTGCC
ACTCAACAAATTTTAGATGAAGCAGAAAGATCTTTGCATGATGCTCTTTGTGTTCTTGCCCAAA
CTGTGAAAGATTCTAGAACAGTTTATGGAGGAGGGTGTTCTGAGATGCTCATGGCTCATGCTGT
GACACAGCTTGCCAATAGAACACCAGGCAAAGAAGCTGTTGCAATGGAGTCTTATGCTAAAGCC
CTGAGAATGTTGCCAACTATCATAGCTGACAATGCAGGCTATGATAGTGCAGATCTGGTTGCAC
AGCTCCGAGCTGCCCATAGTGAAGGCAATACAACTGCTGGACTGGATATGAAGGAAGGTACCAT
TGGAGATATGGCAGTACTGGGTATAACAGAAAGTTTCCAAGTGAAACGACAAGTTCTTTTAAGT
GCAGCTGAAGCAGCAGAAGTGATTCTACGTGTGGACAACATTATCAAAGCAGCACCACGGAAAC
GTGTCCCTGATCACCACCCCTGTTAAGCATTCCCGTATACTGTTGAGCTCTTGGACCAGTTCAT
AGCAAAAGTGCATTTGAAAGACTTCAGCCTCCTGAAAGAAGACTAGAAACGAAGTTTATCTGTG
GCTATTATATCCTTAAGTTTGAACATTTAACTGACCTCCTGTTTTAACATGGGTCTAATTTATT
GCTGTTTCATTTTCCATAAAATTCAGTTGATTTAAGAATTTATTTCTCATACTGTGCATCAAAA
TAAAAATTGGAACAATTATTTAGTTCTTACTTGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001163991	(Get FASTA)	NCBI Sequence Viewer
	XP_020946622	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAI47602	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000000527.3
	ENSSSCP00000060104
	ENSSSCP00000060104.2
	ENSSSCP00000065227.1
	ENSSSCP00015038633.1
	ENSSSCP00025023888.1
	ENSSSCP00030011034.1
	ENSSSCP00035024118.1
	ENSSSCP00040044940.1
	ENSSSCP00045008083.1
	ENSSSCP00050030023.1
	ENSSSCP00055044852.1
	ENSSSCP00060043388.1
	ENSSSCP00065039642.1
	ENSSSCP00070048225.1
	ENSSSCP00070048227.1
	ENSSSCP00070048236.1

RefSeq Acc Id:	XP_020946622 ⟸ XM_021090963
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D1A3N1 (UniProtKB/TrEMBL), A0A8D1FZ32 (UniProtKB/TrEMBL), F6Q936 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVT NDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIA GWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKG SGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRV RVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGV ERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALVSDYVDPGEACTIVLRG ATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAK ALRMLPTIIADNAGYDSADLVAQLRAAHSEGNTTAGLDMKEGTIGDMAVLGITESFQVKRQVLL SAAEAAEVILRVDNIIKAAPRKRVPDHHPC hide sequence

RefSeq Acc Id:

NP_001163991 ⟸ NM_001170520

- UniProtKB:

D0G0C8 (UniProtKB/TrEMBL), A0A4X1W256 (UniProtKB/TrEMBL), A0A5G2Q7N1 (UniProtKB/TrEMBL), A0A8D1A3N1 (UniProtKB/TrEMBL), A0A8D1FZ32 (UniProtKB/TrEMBL), F6Q936 (UniProtKB/TrEMBL), A0A8D0IU25 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVT
NDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIA
GWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKG
SGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRV
RVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGV
ERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILD
EAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPT
IIADNAGYDSADLVAQLRAAHSEGNTTAGLDMKEGTIGDMAVLGITESFQVKRQVLLSAAEAAE
VILRVDNIIKAAPRKRVPDHHPC

hide sequence

Ensembl Acc Id:

ENSSSCP00000000527 ⟸ ENSSSCT00000000535

Ensembl Acc Id:

ENSSSCP00000065227 ⟸ ENSSSCT00000087484

Ensembl Acc Id:

ENSSSCP00000060104 ⟸ ENSSSCT00000084498

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000000496	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015069576	UniProtKB/TrEMBL
	ENSSSCG00025041456	UniProtKB/TrEMBL
	ENSSSCG00030017873	UniProtKB/TrEMBL
	ENSSSCG00035045117	UniProtKB/TrEMBL
	ENSSSCG00040072509	UniProtKB/TrEMBL
	ENSSSCG00045007130	UniProtKB/TrEMBL
	ENSSSCG00050051279	UniProtKB/TrEMBL
	ENSSSCG00055028227	UniProtKB/TrEMBL
	ENSSSCG00060073138	UniProtKB/TrEMBL
	ENSSSCG00065065959	UniProtKB/TrEMBL
	ENSSSCG00070028300	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000000535.5	UniProtKB/TrEMBL
	ENSSSCT00000084498	ENTREZGENE
	ENSSSCT00000084498.2	UniProtKB/TrEMBL
	ENSSSCT00000087484.1	UniProtKB/TrEMBL
	ENSSSCT00015094246.1	UniProtKB/TrEMBL
	ENSSSCT00025056423.1	UniProtKB/TrEMBL
	ENSSSCT00030024707.1	UniProtKB/TrEMBL
	ENSSSCT00035059970.1	UniProtKB/TrEMBL
	ENSSSCT00040100072.1	UniProtKB/TrEMBL
	ENSSSCT00045011892.1	UniProtKB/TrEMBL
	ENSSSCT00050069835.1	UniProtKB/TrEMBL
	ENSSSCT00055056147.1	UniProtKB/TrEMBL
	ENSSSCT00060100002.1	UniProtKB/TrEMBL
	ENSSSCT00065090619.1	UniProtKB/TrEMBL
	ENSSSCT00070056763.1	UniProtKB/TrEMBL
	ENSSSCT00070056765.1	UniProtKB/TrEMBL
	ENSSSCT00070056776.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.560.10	UniProtKB/TrEMBL
	3.30.260.10	UniProtKB/TrEMBL
	3.50.7.10	UniProtKB/TrEMBL
InterPro	Chap_CCT_beta	UniProtKB/TrEMBL
	Chaperone_TCP-1	UniProtKB/TrEMBL
	Chaperonin_TCP-1_CS	UniProtKB/TrEMBL
	Cpn60/TCP-1	UniProtKB/TrEMBL
	GroEL-like_apical_dom_sf	UniProtKB/TrEMBL
	GROEL-like_equatorial_sf	UniProtKB/TrEMBL
	TCP-1-like_intermed_sf	UniProtKB/TrEMBL
	TCP-1_chaperonin	UniProtKB/TrEMBL
KEGG Report	ssc:100157776	UniProtKB/TrEMBL
NCBI Gene	CCT2	ENTREZGENE
PANTHER	PTHR11353	UniProtKB/TrEMBL
Pfam	Cpn60_TCP1	UniProtKB/TrEMBL
PRINTS	TCOMPLEXTCP1	UniProtKB/TrEMBL
PROSITE	TCP1_1	UniProtKB/TrEMBL
	TCP1_2	UniProtKB/TrEMBL
	TCP1_3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48592	UniProtKB/TrEMBL
	SSF52029	UniProtKB/TrEMBL
	SSF54849	UniProtKB/TrEMBL
UniProt	A0A4X1VWT0_PIG	UniProtKB/TrEMBL
	A0A4X1W256	ENTREZGENE
	A0A4X1W2Q0_PIG	UniProtKB/TrEMBL
	A0A5G2Q7N1	ENTREZGENE
	A0A5G2QMG1_PIG	UniProtKB/TrEMBL
	A0A8D0IU25	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1A3N1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1FZ32	ENTREZGENE, UniProtKB/TrEMBL
	D0G0C8	ENTREZGENE, UniProtKB/TrEMBL
	F6Q936	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A4X1W256	UniProtKB/TrEMBL
	A0A5G2Q7N1	UniProtKB/TrEMBL
VGNC ID	VGNC:86380	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD