RHAG (Rh associated glycoprotein) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: RHAG (Rh associated glycoprotein) Sus scrofa
Analyze
Symbol: RHAG
Name: Rh associated glycoprotein
RGD ID: 13922810
Description: ENCODES a protein that exhibits ammonium channel activity (inferred); ankyrin binding (inferred); carbon dioxide transmembrane transporter activity (inferred); INVOLVED IN ammonium transmembrane transport (ortholog); erythrocyte development (ortholog); multicellular organismal-level iron ion homeostasis (ortholog); ASSOCIATED WITH hemolytic anemia (ortholog); overhydrated hereditary stomatocytosis (ortholog); Rh deficiency syndrome (ortholog); FOUND IN ankyrin-1 complex (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ammonium transporter Rh type A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl743,703,876 - 43,729,995 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1743,704,152 - 43,730,944 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2750,018,284 - 50,044,481 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RHAG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl743,703,876 - 43,729,995 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1743,704,152 - 43,730,944 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2750,018,284 - 50,044,481 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RHAG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38649,605,175 - 49,636,839 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl649,605,175 - 49,636,839 (-)EnsemblGRCh38hg38GRCh38
GRCh37649,572,888 - 49,604,552 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36649,680,847 - 49,712,546 (-)NCBINCBI36Build 36hg18NCBI36
Build 34649,680,850 - 49,712,511NCBI
Celera651,129,020 - 51,160,725 (-)NCBICelera
Cytogenetic Map6p12.3ENTREZGENE
HuRef649,302,584 - 49,334,437 (-)NCBIHuRef
CHM1_1649,575,821 - 49,607,510 (-)NCBICHM1_1
T2T-CHM13v2.0649,447,195 - 49,478,851 (-)NCBIT2T-CHM13v2.0
Rhag
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391741,121,990 - 41,154,985 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1741,122,017 - 41,151,645 (+)EnsemblGRCm39 Ensembl
GRCm381740,811,099 - 40,844,094 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1740,811,126 - 40,840,754 (+)EnsemblGRCm38mm10GRCm38
MGSCv371740,948,098 - 40,977,703 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361740,274,633 - 40,304,238 (+)NCBIMGSCv36mm8
Celera1744,216,540 - 44,246,099 (+)NCBICelera
Cytogenetic Map17B2NCBI
cM Map1719.54NCBI
Rhag
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8927,566,349 - 27,594,390 (-)NCBIGRCr8
mRatBN7.2920,069,800 - 20,097,836 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl920,069,807 - 20,097,836 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx928,641,038 - 28,669,067 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0933,715,588 - 33,743,623 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0932,026,353 - 32,054,431 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0923,465,190 - 23,493,081 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl923,465,197 - 23,493,081 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0922,323,155 - 22,351,046 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4915,940,864 - 15,968,319 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1916,206,790 - 16,234,831 (-)NCBI
Celera917,746,824 - 17,774,869 (-)NCBICelera
Cytogenetic Map9q13NCBI
Rhag
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554118,335,230 - 8,353,465 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554118,335,223 - 8,354,430 (+)NCBIChiLan1.0ChiLan1.0
RHAG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2564,089,124 - 64,120,783 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1659,953,964 - 59,985,644 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0649,174,973 - 49,206,667 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1650,436,504 - 50,468,203 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl650,436,307 - 50,468,250 (-)Ensemblpanpan1.1panPan2
RHAG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11217,433,660 - 17,454,323 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1217,433,670 - 17,454,311 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1217,333,447 - 17,354,099 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01217,929,429 - 17,950,114 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1217,929,439 - 17,950,091 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11217,449,489 - 17,469,874 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01217,554,969 - 17,575,628 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01217,684,421 - 17,705,041 (-)NCBIUU_Cfam_GSD_1.0
Rhag
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494652,851,930 - 52,885,730 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647611,081,652 - 11,107,211 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647611,081,631 - 11,106,636 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RHAG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11722,779,382 - 22,809,771 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1722,779,751 - 22,809,192 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604449,565,602 - 49,600,316 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rhag
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479914,446,288 - 14,467,106 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479914,445,270 - 14,467,161 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RHAG
1250 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 2 2 1 5 8 7 2 1 2 2

Sequence


Ensembl Acc Id: ENSSSCT00000001940   ⟹   ENSSSCP00000001892
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl743,703,896 - 43,729,995 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000095304   ⟹   ENSSSCP00000078572
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl743,704,694 - 43,729,995 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000096299   ⟹   ENSSSCP00000078256
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl743,705,764 - 43,729,995 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000101828   ⟹   ENSSSCP00000077033
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl743,703,876 - 43,729,884 (-)Ensembl
RefSeq Acc Id: XM_003128440   ⟹   XP_003128488
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1743,704,152 - 43,730,944 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003128488   ⟸   XM_003128440
- UniProtKB: F1RPZ7 (UniProtKB/TrEMBL),   A0A8D0YNE4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000001892   ⟸   ENSSSCT00000001940
Ensembl Acc Id: ENSSSCP00000077033   ⟸   ENSSSCT00000101828
Ensembl Acc Id: ENSSSCP00000078256   ⟸   ENSSSCT00000096299
Ensembl Acc Id: ENSSSCP00000078572   ⟸   ENSSSCT00000095304

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001735 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035008311 UniProtKB/TrEMBL
  ENSSSCG00050003375 UniProtKB/TrEMBL
  ENSSSCG00055006140 UniProtKB/TrEMBL
  ENSSSCG00065005842 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001940 ENTREZGENE
  ENSSSCT00000001940.5 UniProtKB/TrEMBL
  ENSSSCT00000095304.1 UniProtKB/TrEMBL
  ENSSSCT00000096299.1 UniProtKB/TrEMBL
  ENSSSCT00000101828.1 UniProtKB/TrEMBL
  ENSSSCT00035010385.1 UniProtKB/TrEMBL
  ENSSSCT00050004496.1 UniProtKB/TrEMBL
  ENSSSCT00055012396.1 UniProtKB/TrEMBL
  ENSSSCT00065007860.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3430.10 UniProtKB/TrEMBL
InterPro Ammonium/urea_transptr UniProtKB/TrEMBL
  NH4_transpt_AmtB-like_dom UniProtKB/TrEMBL
  RhesusRHD UniProtKB/TrEMBL
NCBI Gene RHAG ENTREZGENE
PANTHER AMMONIUM TRANSPORTER UniProtKB/TrEMBL
  AMMONIUM TRANSPORTER RH TYPE A UniProtKB/TrEMBL
Pfam Ammonium_transp UniProtKB/TrEMBL
PRINTS RHESUSRHD UniProtKB/TrEMBL
Superfamily-SCOP Ammonium transporter UniProtKB/TrEMBL
UniProt A0A8D0YNE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CKY2_PIG UniProtKB/TrEMBL
  A0A8D1JSP4_PIG UniProtKB/TrEMBL
  A0A8D1XC07_PIG UniProtKB/TrEMBL
  F1RPZ7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8W4FCP0 UniProtKB/TrEMBL
  A0A8W4FH56 UniProtKB/TrEMBL
  A0A8W4FHA2 UniProtKB/TrEMBL
VGNC ID VGNC:92273 ENTREZGENE