SLC8A1 (solute carrier family 8 member A1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: SLC8A1 (solute carrier family 8 member A1) Sus scrofa
Analyze
Symbol: SLC8A1
Name: solute carrier family 8 member A1
RGD ID: 13921021
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); calcium:monoatomic cation antiporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration (ortholog); calcium:sodium antiporter activity (ortholog); INVOLVED IN calcium ion export (ortholog); calcium ion homeostasis (ortholog); calcium ion transmembrane transport (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); brain ischemia (ortholog); Cardiomegaly (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Na+/Ca2+ exchanger isoform NACA3; sodium/calcium exchanger 1; solute carrier family 8 (sodium/calcium exchanger), member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl399,897,162 - 100,244,759 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1399,823,503 - 100,257,306 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23106,268,345 - 106,367,008 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
calcium ion export  (ISO)
calcium ion homeostasis  (ISO)
calcium ion import  (IEA)
calcium ion import across plasma membrane  (IBA)
calcium ion transmembrane transport  (IEA,ISO)
calcium ion transport  (IEA,ISO)
calcium ion transport into cytosol  (ISO)
cardiac muscle cell development  (ISO)
cardiac muscle contraction  (ISO)
cell communication  (IEA)
cell communication by electrical coupling involved in cardiac conduction  (ISO)
cellular response to caffeine  (ISO)
cellular response to cAMP  (ISO)
cellular response to hypoxia  (ISO)
cellular response to reactive oxygen species  (ISO)
embryonic heart tube development  (ISO)
embryonic placenta development  (ISO)
heart morphogenesis  (ISO)
intracellular calcium ion homeostasis  (ISO)
intracellular sodium ion homeostasis  (IEA)
monoatomic ion transport  (IEA)
muscle cell development  (ISO)
negative regulation of cytosolic calcium ion concentration  (ISO)
negative regulation of protein serine/threonine kinase activity  (ISO)
positive regulation of bone mineralization  (IEA)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of fibroblast migration  (ISO)
positive regulation of the force of heart contraction  (IEA)
post-embryonic development  (ISO)
regulation of calcium ion transport  (ISO)
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  (ISO)
regulation of gene expression  (ISO)
regulation of heart rate  (ISO)
regulation of sodium ion transport  (ISO)
regulation of the force of heart contraction  (ISO)
relaxation of smooth muscle  (ISO)
response to ATP  (ISO)
response to glucose  (ISO)
response to hydrogen peroxide  (ISO)
response to hypoxia  (ISO)
response to immobilization stress  (ISO)
response to muscle stretch  (IEA)
response to nutrient  (ISO)
response to xenobiotic stimulus  (ISO)
sodium ion export across plasma membrane  (ISO)
sodium ion import across plasma membrane  (IEA)
sodium ion transmembrane transport  (IBA,IEA)
sodium ion transport  (IEA,ISO)
telencephalon development  (ISO)
transmembrane transport  (IEA)
vascular associated smooth muscle contraction  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway   (ISO)
calcium transport pathway   (ISO)
calcium/calcium-mediated signaling pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

References
Additional References at PubMed
PMID:8780242   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC8A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl399,897,162 - 100,244,759 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1399,823,503 - 100,257,306 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23106,268,345 - 106,367,008 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC8A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38240,097,270 - 40,512,435 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl240,097,270 - 40,611,053 (-)EnsemblGRCh38hg38GRCh38
GRCh37240,324,410 - 40,739,575 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36240,192,790 - 40,510,948 (-)NCBINCBI36Build 36hg18NCBI36
Build 34240,253,795 - 40,569,095NCBI
Celera240,180,223 - 40,580,364 (-)NCBICelera
Cytogenetic Map2p22.1NCBI
HuRef240,078,719 - 40,478,536 (-)NCBIHuRef
CHM1_1240,269,776 - 40,669,965 (-)NCBICHM1_1
T2T-CHM13v2.0240,106,262 - 40,521,419 (-)NCBIT2T-CHM13v2.0
Slc8a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391781,680,534 - 82,045,816 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1781,680,534 - 82,045,806 (-)EnsemblGRCm39 Ensembl
GRCm381781,373,105 - 81,738,387 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1781,373,105 - 81,738,377 (-)EnsemblGRCm38mm10GRCm38
MGSCv371781,772,445 - 82,137,717 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361781,293,929 - 81,646,695 (-)NCBIMGSCv36mm8
Celera1785,706,575 - 86,071,957 (-)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1751.29NCBI
Slc8a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8618,975,498 - 19,299,704 (+)NCBIGRCr8
mRatBN7.2613,194,609 - 13,547,369 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl613,194,662 - 13,535,628 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx613,583,983 - 13,850,400 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0613,893,299 - 14,159,696 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0613,388,155 - 13,652,568 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.064,244,076 - 4,564,262 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl64,258,991 - 4,520,604 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.064,208,126 - 4,495,690 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.464,421,046 - 4,691,716 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.164,421,045 - 4,691,719 (-)NCBI
Celera612,962,979 - 13,227,191 (+)NCBICelera
Cytogenetic Map6q12NCBI
Slc8a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554417,656,031 - 7,957,640 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554417,653,107 - 8,037,784 (-)NCBIChiLan1.0ChiLan1.0
SLC8A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21285,919,909 - 86,321,105 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A85,923,870 - 86,341,238 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A40,169,339 - 40,586,546 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A40,936,799 - 41,444,963 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A40,939,900 - 41,363,038 (-)Ensemblpanpan1.1panPan2
SLC8A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11732,004,207 - 32,381,399 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1732,005,245 - 32,307,700 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1731,772,774 - 32,072,461 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01732,669,189 - 33,057,808 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1732,668,180 - 32,983,961 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11731,887,301 - 32,186,904 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01731,956,496 - 32,256,674 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01732,171,264 - 32,471,231 (-)NCBIUU_Cfam_GSD_1.0
Slc8a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629239,466,272 - 39,841,883 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650810,968,656 - 11,253,070 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650810,894,918 - 11,256,084 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC8A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11466,813,523 - 67,210,261 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604544,751,652 - 45,239,417 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc8a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473821,651,489 - 21,939,927 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473821,648,277 - 22,026,385 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC8A1
10484 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021088305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021088333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK390118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ268730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01003013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S83199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000047281   ⟹   ENSSSCP00000057989
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl399,897,162 - 100,244,759 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000058849   ⟹   ENSSSCP00000033694
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl399,897,162 - 100,244,759 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000064033   ⟹   ENSSSCP00000052260
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl399,897,162 - 100,244,754 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000105597   ⟹   ENSSSCP00000081250
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl399,897,162 - 100,244,754 (+)Ensembl
RefSeq Acc Id: XM_021088305   ⟹   XP_020943964
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,879,022 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088306   ⟹   XP_020943965
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,879,020 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088307   ⟹   XP_020943966
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,823,503 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088308   ⟹   XP_020943967
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,879,021 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088309   ⟹   XP_020943968
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,879,021 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088310   ⟹   XP_020943969
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,879,021 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088311   ⟹   XP_020943970
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,879,020 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088312   ⟹   XP_020943971
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,879,022 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088314   ⟹   XP_020943973
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,879,021 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088315   ⟹   XP_020943974
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,823,504 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088316   ⟹   XP_020943975
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,878,216 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088317   ⟹   XP_020943976
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,823,504 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088318   ⟹   XP_020943977
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,866,146 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088319   ⟹   XP_020943978
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,878,197 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088320   ⟹   XP_020943979
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,876,844 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088321   ⟹   XP_020943980
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,877,447 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088322   ⟹   XP_020943981
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,877,447 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088323   ⟹   XP_020943982
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,878,488 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088325   ⟹   XP_020943984
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,876,848 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088326   ⟹   XP_020943985
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,878,488 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088327   ⟹   XP_020943986
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,878,197 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088328   ⟹   XP_020943987
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,878,215 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088329   ⟹   XP_020943988
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,878,197 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088330   ⟹   XP_020943989
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,877,738 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088331   ⟹   XP_020943990
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,878,210 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088332   ⟹   XP_020943991
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,878,197 - 100,257,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088333   ⟹   XP_020943992
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1399,823,504 - 100,257,306 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020943964 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943965 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943966 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943967 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943968 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943969 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943970 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943971 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943973 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943974 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943975 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943976 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943977 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943978 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943979 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943980 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943981 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943982 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943984 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943985 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943986 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943987 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943988 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943989 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943990 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943991 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943992 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD14428 (Get FASTA)   NCBI Sequence Viewer  
  ACJ03972 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000033694.2
  ENSSSCP00000052260
  ENSSSCP00000052260.2
  ENSSSCP00000057989
  ENSSSCP00000057989.2
  ENSSSCP00000081250
  ENSSSCP00000081250.1
  ENSSSCP00025001681.1
  ENSSSCP00025001687.1
  ENSSSCP00025001715.1
  ENSSSCP00025001718.1
  ENSSSCP00030039231.1
  ENSSSCP00035016411.1
  ENSSSCP00045040287.1
  ENSSSCP00050015432.1
  ENSSSCP00050015433.1
  ENSSSCP00050015437.1
  ENSSSCP00050015438.1
  ENSSSCP00060016060.1
  ENSSSCP00060016062.1
  ENSSSCP00060016067.1
  ENSSSCP00060016070.1
  ENSSSCP00065000810.1
  ENSSSCP00070005276.1
  ENSSSCP00070005279.1
  ENSSSCP00070005282.1
  ENSSSCP00070005287.1
RefSeq Acc Id: XP_020943966   ⟸   XM_021088307
- Peptide Label: isoform X3
- UniProtKB: A0A287BMZ2 (UniProtKB/TrEMBL),   A0A4X1ST15 (UniProtKB/TrEMBL),   A0A8D0LW87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943974   ⟸   XM_021088315
- Peptide Label: isoform X10
- UniProtKB: A0A287BMZ2 (UniProtKB/TrEMBL),   A0A4X1ST15 (UniProtKB/TrEMBL),   A0A8D0LW87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943992   ⟸   XM_021088333
- Peptide Label: isoform X13
- UniProtKB: A0A0B8RS96 (UniProtKB/TrEMBL),   A0A287AV78 (UniProtKB/TrEMBL),   A0A8D1L6P5 (UniProtKB/TrEMBL),   A0A287B7H0 (UniProtKB/TrEMBL),   A0A4X1SRG7 (UniProtKB/TrEMBL),   A0A8D1UXL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943976   ⟸   XM_021088317
- Peptide Label: isoform X10
- UniProtKB: A0A287BMZ2 (UniProtKB/TrEMBL),   A0A4X1ST15 (UniProtKB/TrEMBL),   A0A8D0LW87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943977   ⟸   XM_021088318
- Peptide Label: isoform X10
- UniProtKB: A0A287BMZ2 (UniProtKB/TrEMBL),   A0A4X1ST15 (UniProtKB/TrEMBL),   A0A8D0LW87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943979   ⟸   XM_021088320
- Peptide Label: isoform X10
- UniProtKB: A0A287BMZ2 (UniProtKB/TrEMBL),   A0A4X1ST15 (UniProtKB/TrEMBL),   A0A8D0LW87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943984   ⟸   XM_021088325
- Peptide Label: isoform X10
- UniProtKB: A0A287BMZ2 (UniProtKB/TrEMBL),   A0A4X1ST15 (UniProtKB/TrEMBL),   A0A8D0LW87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943981   ⟸   XM_021088322
- Peptide Label: isoform X10
- UniProtKB: A0A287BMZ2 (UniProtKB/TrEMBL),   A0A4X1ST15 (UniProtKB/TrEMBL),   A0A8D0LW87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943980   ⟸   XM_021088321
- Peptide Label: isoform X10
- UniProtKB: A0A287BMZ2 (UniProtKB/TrEMBL),   A0A4X1ST15 (UniProtKB/TrEMBL),   A0A8D0LW87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943989   ⟸   XM_021088330
- Peptide Label: isoform X12
- UniProtKB: A0A287B7H0 (UniProtKB/TrEMBL),   A0A4X1SRG7 (UniProtKB/TrEMBL),   A0A8D1UXL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943978   ⟸   XM_021088319
- Peptide Label: isoform X10
- UniProtKB: A0A287BMZ2 (UniProtKB/TrEMBL),   A0A4X1ST15 (UniProtKB/TrEMBL),   A0A8D0LW87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943986   ⟸   XM_021088327
- Peptide Label: isoform X11
- UniProtKB: A0A287B7H0 (UniProtKB/TrEMBL),   A0A4X1SRG7 (UniProtKB/TrEMBL),   A0A8D1UXL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943988   ⟸   XM_021088329
- Peptide Label: isoform X12
- UniProtKB: A0A287B7H0 (UniProtKB/TrEMBL),   A0A4X1SRG7 (UniProtKB/TrEMBL),   A0A8D1UXL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943991   ⟸   XM_021088332
- Peptide Label: isoform X13
- UniProtKB: A0A0B8RS96 (UniProtKB/TrEMBL),   A0A287AV78 (UniProtKB/TrEMBL),   A0A8D1L6P5 (UniProtKB/TrEMBL),   A0A287B7H0 (UniProtKB/TrEMBL),   A0A4X1SRG7 (UniProtKB/TrEMBL),   A0A8D1UXL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943990   ⟸   XM_021088331
- Peptide Label: isoform X13
- UniProtKB: A0A0B8RS96 (UniProtKB/TrEMBL),   A0A287AV78 (UniProtKB/TrEMBL),   A0A8D1L6P5 (UniProtKB/TrEMBL),   A0A287B7H0 (UniProtKB/TrEMBL),   A0A4X1SRG7 (UniProtKB/TrEMBL),   A0A8D1UXL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943987   ⟸   XM_021088328
- Peptide Label: isoform X12
- UniProtKB: A0A287B7H0 (UniProtKB/TrEMBL),   A0A4X1SRG7 (UniProtKB/TrEMBL),   A0A8D1UXL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943975   ⟸   XM_021088316
- Peptide Label: isoform X10
- UniProtKB: A0A287BMZ2 (UniProtKB/TrEMBL),   A0A4X1ST15 (UniProtKB/TrEMBL),   A0A8D0LW87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943982   ⟸   XM_021088323
- Peptide Label: isoform X10
- UniProtKB: A0A287BMZ2 (UniProtKB/TrEMBL),   A0A4X1ST15 (UniProtKB/TrEMBL),   A0A8D0LW87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943985   ⟸   XM_021088326
- Peptide Label: isoform X10
- UniProtKB: A0A287BMZ2 (UniProtKB/TrEMBL),   A0A4X1ST15 (UniProtKB/TrEMBL),   A0A8D0LW87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943965   ⟸   XM_021088306
- Peptide Label: isoform X2
- UniProtKB: A0A4X1SRG1 (UniProtKB/TrEMBL),   A0A8W4FPF2 (UniProtKB/TrEMBL),   A0A8D0KKK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943970   ⟸   XM_021088311
- Peptide Label: isoform X7
- UniProtKB: A0A287B7H0 (UniProtKB/TrEMBL),   A0A4X1SRG7 (UniProtKB/TrEMBL),   A0A8D1UXL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943967   ⟸   XM_021088308
- Peptide Label: isoform X4
- UniProtKB: A0A286ZQ09 (UniProtKB/TrEMBL),   A0A4X1SS86 (UniProtKB/TrEMBL),   A0A8D1LZH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943968   ⟸   XM_021088309
- Peptide Label: isoform X5
- UniProtKB: A0A286ZQ09 (UniProtKB/TrEMBL),   A0A4X1SS86 (UniProtKB/TrEMBL),   A0A8D1LZH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943969   ⟸   XM_021088310
- Peptide Label: isoform X6
- UniProtKB: A0A287B7H0 (UniProtKB/TrEMBL),   A0A4X1SRG7 (UniProtKB/TrEMBL),   A0A8D1UXL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943973   ⟸   XM_021088314
- Peptide Label: isoform X9
- UniProtKB: A0A287B7H0 (UniProtKB/TrEMBL),   A0A4X1SRG7 (UniProtKB/TrEMBL),   A0A8D1UXL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943964   ⟸   XM_021088305
- Peptide Label: isoform X1
- UniProtKB: A0A287BMZ2 (UniProtKB/TrEMBL),   A0A4X1ST15 (UniProtKB/TrEMBL),   A0A8D0LW87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943971   ⟸   XM_021088312
- Peptide Label: isoform X8
- UniProtKB: A0A287B7H0 (UniProtKB/TrEMBL),   A0A4X1SRG7 (UniProtKB/TrEMBL),   A0A8D1UXL2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000052260   ⟸   ENSSSCT00000064033
Ensembl Acc Id: ENSSSCP00000033694   ⟸   ENSSSCT00000058849
Ensembl Acc Id: ENSSSCP00000057989   ⟸   ENSSSCT00000047281
Ensembl Acc Id: ENSSSCP00000081250   ⟸   ENSSSCT00000105597
Protein Domains
J   Sodium/calcium exchanger membrane region


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036418 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025002895 UniProtKB/TrEMBL
  ENSSSCG00030060701 UniProtKB/TrEMBL
  ENSSSCG00035030914 UniProtKB/TrEMBL
  ENSSSCG00045033371 UniProtKB/TrEMBL
  ENSSSCG00050027487 UniProtKB/TrEMBL
  ENSSSCG00060027785 UniProtKB/TrEMBL
  ENSSSCG00065001817 UniProtKB/TrEMBL
  ENSSSCG00070003373 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000047281 ENTREZGENE
  ENSSSCT00000047281.3 UniProtKB/TrEMBL
  ENSSSCT00000058849.3 UniProtKB/TrEMBL
  ENSSSCT00000064033 ENTREZGENE
  ENSSSCT00000064033.3 UniProtKB/TrEMBL
  ENSSSCT00000105597 ENTREZGENE
  ENSSSCT00000105597.1 UniProtKB/TrEMBL
  ENSSSCT00025004347.1 UniProtKB/TrEMBL
  ENSSSCT00025004356.1 UniProtKB/TrEMBL
  ENSSSCT00025004420.1 UniProtKB/TrEMBL
  ENSSSCT00025004429.1 UniProtKB/TrEMBL
  ENSSSCT00030085156.1 UniProtKB/TrEMBL
  ENSSSCT00035041020.1 UniProtKB/TrEMBL
  ENSSSCT00045057598.1 UniProtKB/TrEMBL
  ENSSSCT00050037124.1 UniProtKB/TrEMBL
  ENSSSCT00050037125.1 UniProtKB/TrEMBL
  ENSSSCT00050037129.1 UniProtKB/TrEMBL
  ENSSSCT00050037130.1 UniProtKB/TrEMBL
  ENSSSCT00060037730.1 UniProtKB/TrEMBL
  ENSSSCT00060037733.1 UniProtKB/TrEMBL
  ENSSSCT00060037747.1 UniProtKB/TrEMBL
  ENSSSCT00060037751.1 UniProtKB/TrEMBL
  ENSSSCT00065002415.1 UniProtKB/TrEMBL
  ENSSSCT00070006483.1 UniProtKB/TrEMBL
  ENSSSCT00070006486.1 UniProtKB/TrEMBL
  ENSSSCT00070006490.1 UniProtKB/TrEMBL
  ENSSSCT00070006495.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1420.30 UniProtKB/TrEMBL
  2.60.40.2030 UniProtKB/TrEMBL
InterPro CaCA UniProtKB/TrEMBL
  CalX-like_sf UniProtKB/TrEMBL
  Calx_beta UniProtKB/TrEMBL
  DnaJ_domain UniProtKB/TrEMBL
  Na_Ca_Ex UniProtKB/TrEMBL
  Na_Ca_Ex_C-exten UniProtKB/TrEMBL
  NaCa_exhngr1 UniProtKB/TrEMBL
  NaCa_Exmemb UniProtKB/TrEMBL
  NCX_ion-bd_dom_sf UniProtKB/TrEMBL
NCBI Gene SLC8A1 ENTREZGENE
PANTHER SODIUM/CALCIUM EXCHANGER UniProtKB/TrEMBL
  SODIUM/CALCIUM EXCHANGER 1 UniProtKB/TrEMBL
Pfam Calx-beta UniProtKB/TrEMBL
  Na_Ca_ex UniProtKB/TrEMBL
  Na_Ca_ex_C UniProtKB/TrEMBL
PRINTS NACAEXCHNGR UniProtKB/TrEMBL
  NACAEXCHNGR1 UniProtKB/TrEMBL
PROSITE DNAJ_2 UniProtKB/TrEMBL
SMART Calx_beta UniProtKB/TrEMBL
Superfamily-SCOP SSF141072 UniProtKB/TrEMBL
UniProt A0A0B8RS96 ENTREZGENE
  A0A286ZQ09 ENTREZGENE
  A0A287AV78 ENTREZGENE, UniProtKB/TrEMBL
  A0A287B7H0 ENTREZGENE
  A0A287BMZ2 ENTREZGENE
  A0A4X1SRG1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SRG7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SS86 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1ST15 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0KKK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LW87 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1L6P5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1LZH4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1UXL2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FPF2 ENTREZGENE
  B6V8E0_PIG UniProtKB/TrEMBL
UniProt Secondary A0A286ZQ09 UniProtKB/TrEMBL
  A0A287B7H0 UniProtKB/TrEMBL
  A0A287BMZ2 UniProtKB/TrEMBL
  A0A8W4FPF2 UniProtKB/TrEMBL
VGNC ID VGNC:93178 ENTREZGENE