MDH1 (malate dehydrogenase 1) - Rat Genome Database

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Gene: MDH1 (malate dehydrogenase 1) Sus scrofa
Analyze
Symbol: MDH1
Name: malate dehydrogenase 1
RGD ID: 13920774
Description: ENCODES a protein that exhibits NAD binding; L-malate dehydrogenase (NAD+) activity (ortholog); malate dehydrogenase activity (ortholog); INVOLVED IN malate metabolic process (ortholog); NAD metabolic process (ortholog); NADH metabolic process (ortholog); PARTICIPATES IN Leigh disease pathway; nicotinamide adenine dinucleotide metabolic pathway; primary hyperoxaluria type 2 pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); adult respiratory distress syndrome (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN cytosol; INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: aromatic alpha-keto acid reductase; cytosolic malate dehydrogenase; KAR; malate dehydrogenase 1, NAD (soluble); malate dehydrogenase, cytoplasmic; MDH
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl378,244,999 - 78,268,600 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1378,247,229 - 78,263,085 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2382,274,663 - 82,280,460 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (IEA)
cytoplasm  (IEA)
cytosol  (IBA,IDA,IEA)

References
Additional References at PubMed
PMID:2775751   PMID:3312200   PMID:3606987   PMID:8682322   PMID:10075524   PMID:14681463   PMID:17145712   PMID:19015805   PMID:21152271   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MDH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl378,244,999 - 78,268,600 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1378,247,229 - 78,263,085 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2382,274,663 - 82,280,460 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MDH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38263,588,963 - 63,607,197 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl263,588,609 - 63,607,197 (+)EnsemblGRCh38hg38GRCh38
GRCh37263,816,097 - 63,834,331 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36263,669,626 - 63,687,832 (+)NCBINCBI36Build 36hg18NCBI36
Build 34263,727,772 - 63,745,979NCBI
Celera263,661,163 - 63,679,336 (+)NCBICelera
Cytogenetic Map2p15NCBI
HuRef263,556,773 - 63,575,326 (+)NCBIHuRef
CHM1_1263,745,880 - 63,764,431 (+)NCBICHM1_1
T2T-CHM13v2.0263,596,617 - 63,614,818 (+)NCBIT2T-CHM13v2.0
Mdh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391121,506,692 - 21,521,934 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1121,506,692 - 21,522,367 (-)EnsemblGRCm39 Ensembl
GRCm381121,556,692 - 21,571,934 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1121,556,692 - 21,572,367 (-)EnsemblGRCm38mm10GRCm38
MGSCv371121,456,695 - 21,471,937 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,456,790 - 21,471,832 (-)NCBIMGSCv36mm8
Celera1123,704,959 - 23,720,201 (-)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1113.89NCBI
Mdh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81499,831,934 - 99,847,227 (-)NCBIGRCr8
mRatBN7.21495,630,625 - 95,645,920 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1495,630,306 - 95,645,925 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1499,982,791 - 99,997,990 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014101,223,133 - 101,238,332 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01497,696,668 - 97,711,868 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014106,378,349 - 106,393,642 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14106,378,942 - 106,393,670 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014106,449,337 - 106,463,995 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414102,259,130 - 102,273,788 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114102,278,343 - 102,292,999 (-)NCBI
Celera1494,639,971 - 94,655,156 (-)NCBICelera
Cytogenetic Map14q22NCBI
Mdh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542420,706,058 - 20,723,493 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542420,707,765 - 20,723,493 (-)NCBIChiLan1.0ChiLan1.0
MDH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21262,789,858 - 62,808,152 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A62,793,808 - 62,812,102 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A63,658,933 - 63,677,257 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A64,785,132 - 64,803,631 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A64,785,132 - 64,803,631 (+)Ensemblpanpan1.1panPan2
MDH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11063,316,818 - 63,334,556 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1063,316,831 - 63,361,735 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1063,205,783 - 63,223,532 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01064,325,732 - 64,343,477 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1064,325,748 - 64,393,190 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11064,008,394 - 64,026,100 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01064,316,618 - 64,334,341 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01064,609,207 - 64,626,872 (+)NCBIUU_Cfam_GSD_1.0
Mdh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629219,984,379 - 20,000,470 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364918,570,472 - 8,587,686 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364918,570,472 - 8,586,914 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MDH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11443,406,502 - 43,425,525 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1443,406,499 - 43,425,095 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604568,435,625 - 68,454,293 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mdh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247629,881,950 - 9,901,372 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247629,884,521 - 9,900,593 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MDH1
353 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000009164   ⟹   ENSSSCP00000008933
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl378,247,166 - 78,268,600 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000025091   ⟹   ENSSSCP00000027164
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl378,244,999 - 78,263,151 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000071972   ⟹   ENSSSCP00000065815
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl378,244,999 - 78,268,168 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000073046   ⟹   ENSSSCP00000064114
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl378,244,999 - 78,263,845 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000084364   ⟹   ENSSSCP00000062212
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl378,244,999 - 78,268,248 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000085792   ⟹   ENSSSCP00000063893
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl378,244,999 - 78,268,168 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000087195   ⟹   ENSSSCP00000062430
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl378,244,999 - 78,263,087 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000101739   ⟹   ENSSSCP00000076649
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl378,244,999 - 78,257,431 (-)Ensembl
RefSeq Acc Id: NM_213874   ⟹   NP_999039
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1378,247,229 - 78,263,085 (-)NCBI
Sequence:
RefSeq Acc Id: NP_999039   ⟸   NM_213874
- UniProtKB: Q29560 (UniProtKB/Swiss-Prot),   P11708 (UniProtKB/Swiss-Prot),   A0A480JV95 (UniProtKB/TrEMBL),   A0A8D1BFV6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000027164   ⟸   ENSSSCT00000025091
Ensembl Acc Id: ENSSSCP00000008933   ⟸   ENSSSCT00000009164
Ensembl Acc Id: ENSSSCP00000062212   ⟸   ENSSSCT00000084364
Ensembl Acc Id: ENSSSCP00000063893   ⟸   ENSSSCT00000085792
Ensembl Acc Id: ENSSSCP00000065815   ⟸   ENSSSCT00000071972
Ensembl Acc Id: ENSSSCP00000062430   ⟸   ENSSSCT00000087195
Ensembl Acc Id: ENSSSCP00000064114   ⟸   ENSSSCT00000073046
Ensembl Acc Id: ENSSSCP00000076649   ⟸   ENSSSCT00000101739

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000025751 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00015049456 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025018263 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00030003287 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00035064600 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00040001107 UniProtKB/TrEMBL
  ENSSSCG00045020269 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00055020633 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00060046704 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00065058308 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00070030148 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00085012240 UniProtKB/Swiss-Prot
  ENSSSCG00090019826 UniProtKB/Swiss-Prot
  ENSSSCG00105005152 UniProtKB/Swiss-Prot
  ENSSSCG00110001173 UniProtKB/Swiss-Prot
  ENSSSCG00130021213 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000009164 ENTREZGENE
  ENSSSCT00000009164.5 UniProtKB/TrEMBL
  ENSSSCT00000025091.4 UniProtKB/TrEMBL
  ENSSSCT00000071972.2 UniProtKB/TrEMBL
  ENSSSCT00000073046.2 UniProtKB/TrEMBL
  ENSSSCT00000084364.1 UniProtKB/Swiss-Prot
  ENSSSCT00000085792.2 UniProtKB/TrEMBL
  ENSSSCT00000087195.2 UniProtKB/TrEMBL
  ENSSSCT00000101739.1 UniProtKB/TrEMBL
  ENSSSCT00015066598.1 UniProtKB/Swiss-Prot
  ENSSSCT00015066818.1 UniProtKB/Swiss-Prot
  ENSSSCT00015066917.1 UniProtKB/TrEMBL
  ENSSSCT00025024872.1 UniProtKB/Swiss-Prot
  ENSSSCT00025024902.1 UniProtKB/Swiss-Prot
  ENSSSCT00025024932.1 UniProtKB/TrEMBL
  ENSSSCT00030004373.1 UniProtKB/Swiss-Prot
  ENSSSCT00030004398.1 UniProtKB/Swiss-Prot
  ENSSSCT00030004423.1 UniProtKB/TrEMBL
  ENSSSCT00035086982.1 UniProtKB/Swiss-Prot
  ENSSSCT00035086994.1 UniProtKB/Swiss-Prot
  ENSSSCT00035087008.1 UniProtKB/TrEMBL
  ENSSSCT00040001403.1 UniProtKB/TrEMBL
  ENSSSCT00040001421.1 UniProtKB/TrEMBL
  ENSSSCT00045034851.1 UniProtKB/Swiss-Prot
  ENSSSCT00045034956.1 UniProtKB/Swiss-Prot
  ENSSSCT00045035045.1 UniProtKB/TrEMBL
  ENSSSCT00055040807.1 UniProtKB/Swiss-Prot
  ENSSSCT00055040984.1 UniProtKB/Swiss-Prot
  ENSSSCT00055041074.1 UniProtKB/TrEMBL
  ENSSSCT00060063466.1 UniProtKB/Swiss-Prot
  ENSSSCT00060063473.1 UniProtKB/Swiss-Prot
  ENSSSCT00060063486.1 UniProtKB/TrEMBL
  ENSSSCT00065079812.1 UniProtKB/Swiss-Prot
  ENSSSCT00065079828.1 UniProtKB/Swiss-Prot
  ENSSSCT00065079831.1 UniProtKB/TrEMBL
  ENSSSCT00070060652.1 UniProtKB/Swiss-Prot
  ENSSSCT00070060653.1 UniProtKB/TrEMBL
  ENSSSCT00070060669.1 UniProtKB/TrEMBL
  ENSSSCT00070060671.1 UniProtKB/TrEMBL
  ENSSSCT00070060672.1 UniProtKB/Swiss-Prot
  ENSSSCT00070060677.1 UniProtKB/TrEMBL
  ENSSSCT00085023006 UniProtKB/Swiss-Prot
  ENSSSCT00090035135 UniProtKB/Swiss-Prot
  ENSSSCT00105010568 UniProtKB/Swiss-Prot
  ENSSSCT00110002488 UniProtKB/Swiss-Prot
  ENSSSCT00130041178 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro L-lactate/malate_DH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lactate/malate_DH_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lactate/malate_DH_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lactate_DH/Glyco_Ohase_4_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Malate_DH_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Malate_DH_NAD-dep_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Malate_DH_type2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:396894 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene MDH1 ENTREZGENE
PANTHER PTHR23382 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ldh_1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ldh_1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PIRSF Lac_mal_DH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MDH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56327 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A480JV95 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W5L3_PIG UniProtKB/TrEMBL
  A0A4X1WBE3_PIG UniProtKB/TrEMBL
  A0A4X1WCL2_PIG UniProtKB/TrEMBL
  A0A4X1WCL6_PIG UniProtKB/TrEMBL
  A0A5G2QFC2_PIG UniProtKB/TrEMBL
  A0A5G2QP21_PIG UniProtKB/TrEMBL
  A0A5G2QP84_PIG UniProtKB/TrEMBL
  A0A5G2QPX2_PIG UniProtKB/TrEMBL
  A0A5S8KKT9_PIG UniProtKB/TrEMBL
  A0A8D1AXH1_PIG UniProtKB/TrEMBL
  A0A8D1BFV6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FBF0_PIG UniProtKB/TrEMBL
  MDHC_PIG UniProtKB/Swiss-Prot, ENTREZGENE
  Q29560 ENTREZGENE
UniProt Secondary A0A900PKR1 UniProtKB/TrEMBL
  Q29560 UniProtKB/Swiss-Prot
VGNC ID VGNC:109461 ENTREZGENE