PLS1 (plastin 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: PLS1 (plastin 1) Sus scrofa
Analyze
Symbol: PLS1
Name: plastin 1
RGD ID: 13898802
Description: ENCODES a protein that exhibits actin binding (inferred); actin filament binding (inferred); calcium ion binding (inferred); INVOLVED IN microvillus assembly (ortholog); terminal web assembly (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 76 (ortholog); genetic disease (ortholog); FOUND IN brush border (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: plastin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1383,308,007 - 83,434,128 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11383,307,692 - 83,434,133 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PLS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1383,308,007 - 83,434,128 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11383,307,692 - 83,434,133 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PLS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383142,596,393 - 142,713,664 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3142,596,393 - 142,713,664 (+)EnsemblGRCh38hg38GRCh38
GRCh373142,315,235 - 142,432,506 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363143,825,034 - 143,915,191 (+)NCBINCBI36Build 36hg18NCBI36
Build 343143,825,041 - 143,915,199NCBI
Celera3140,738,741 - 140,856,000 (+)NCBICelera
Cytogenetic Map3q23NCBI
HuRef3139,687,922 - 139,805,221 (+)NCBIHuRef
CHM1_13142,278,265 - 142,395,516 (+)NCBICHM1_1
T2T-CHM13v2.03145,343,653 - 145,460,901 (+)NCBIT2T-CHM13v2.0
Pls1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39995,634,695 - 95,727,359 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl995,634,695 - 95,727,364 (-)EnsemblGRCm39 Ensembl
GRCm38995,752,642 - 95,845,306 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl995,752,642 - 95,845,311 (-)EnsemblGRCm38mm10GRCm38
MGSCv37995,653,061 - 95,745,698 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36995,563,391 - 95,654,612 (-)NCBIMGSCv36mm8
Celera995,319,770 - 95,411,700 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map950.22NCBI
Pls1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88105,196,312 - 105,306,252 (-)NCBIGRCr8
mRatBN7.2896,316,703 - 96,426,592 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl896,317,849 - 96,385,195 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8101,983,678 - 102,015,932 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08100,182,931 - 100,215,183 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0898,021,875 - 98,054,127 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08103,557,361 - 103,659,625 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8103,557,364 - 103,608,913 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08103,008,357 - 103,110,153 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48100,825,543 - 100,858,153 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18100,845,099 - 100,913,858 (-)NCBI
Celera895,763,631 - 95,795,453 (-)NCBICelera
Cytogenetic Map8q31NCBI
Pls1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555083,213,646 - 3,260,554 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555083,215,304 - 3,324,240 (-)NCBIChiLan1.0ChiLan1.0
PLS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22140,490,165 - 140,623,025 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13140,494,897 - 140,627,757 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03139,629,825 - 139,747,080 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13147,221,909 - 147,338,600 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3147,289,205 - 147,338,600 (+)Ensemblpanpan1.1panPan2
PLS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12338,243,631 - 38,347,195 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2338,243,024 - 38,347,202 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2338,170,597 - 38,273,260 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02338,775,761 - 38,879,245 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2338,775,186 - 38,879,252 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12338,457,792 - 38,561,305 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02338,534,253 - 38,637,869 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02338,778,573 - 38,881,960 (+)NCBIUU_Cfam_GSD_1.0
Pls1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560277,466,080 - 77,583,189 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365404,205,844 - 4,323,120 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365404,205,871 - 4,323,121 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11547,919,807 - 48,031,158 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1547,919,823 - 48,003,805 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604120,854,232 - 20,965,494 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pls1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473019,163,783 - 19,302,222 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473019,164,360 - 19,302,369 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PLS1
2724 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 3 23 3 2 5 13 11 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000012787   ⟹   ENSSSCP00000012450
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1383,308,007 - 83,432,741 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000052898   ⟹   ENSSSCP00000055778
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1383,308,007 - 83,432,741 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000057689   ⟹   ENSSSCP00000045916
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1383,340,519 - 83,434,128 (+)Ensembl
RefSeq Acc Id: XM_021069572   ⟹   XP_020925231
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11383,307,692 - 83,434,133 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021069573   ⟹   XP_020925232
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11383,340,318 - 83,434,131 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021069574   ⟹   XP_020925233
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11383,340,314 - 83,434,131 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021069576   ⟹   XP_020925235
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11383,307,980 - 83,434,131 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021069577   ⟹   XP_020925236
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11383,371,255 - 83,434,131 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020925231   ⟸   XM_021069572
- UniProtKB: A0A480K625 (UniProtKB/TrEMBL),   A0A4X1T842 (UniProtKB/TrEMBL),   A0A287BI79 (UniProtKB/TrEMBL),   A0A4X1T7K7 (UniProtKB/TrEMBL),   A0A8D1XIS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020925235   ⟸   XM_021069576
- UniProtKB: A0A480K625 (UniProtKB/TrEMBL),   A0A4X1T842 (UniProtKB/TrEMBL),   A0A287BI79 (UniProtKB/TrEMBL),   A0A4X1T7K7 (UniProtKB/TrEMBL),   A0A8D1XIS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020925233   ⟸   XM_021069574
- UniProtKB: A0A480K625 (UniProtKB/TrEMBL),   A0A4X1T842 (UniProtKB/TrEMBL),   A0A287BI79 (UniProtKB/TrEMBL),   A0A4X1T7K7 (UniProtKB/TrEMBL),   A0A8D1XIS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020925232   ⟸   XM_021069573
- UniProtKB: A0A480K625 (UniProtKB/TrEMBL),   A0A4X1T842 (UniProtKB/TrEMBL),   A0A287BI79 (UniProtKB/TrEMBL),   A0A4X1T7K7 (UniProtKB/TrEMBL),   A0A8D1XIS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020925236   ⟸   XM_021069577
- UniProtKB: A0A480K625 (UniProtKB/TrEMBL),   A0A4X1T842 (UniProtKB/TrEMBL),   A0A287BI79 (UniProtKB/TrEMBL),   A0A4X1T7K7 (UniProtKB/TrEMBL),   A0A8D1XIS4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000055778   ⟸   ENSSSCT00000052898
Ensembl Acc Id: ENSSSCP00000012450   ⟸   ENSSSCT00000012787
Ensembl Acc Id: ENSSSCP00000045916   ⟸   ENSSSCT00000057689
Protein Domains
Calponin-homology (CH)   EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011680 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015022266 UniProtKB/TrEMBL
  ENSSSCG00025070841 UniProtKB/TrEMBL
  ENSSSCG00030013753 UniProtKB/TrEMBL
  ENSSSCG00035017409 UniProtKB/TrEMBL
  ENSSSCG00040006315 UniProtKB/TrEMBL
  ENSSSCG00045018931 UniProtKB/TrEMBL
  ENSSSCG00050019222 UniProtKB/TrEMBL
  ENSSSCG00055019504 UniProtKB/TrEMBL
  ENSSSCG00060014055 UniProtKB/TrEMBL
  ENSSSCG00065012357 UniProtKB/TrEMBL
  ENSSSCG00070006954 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000052898 ENTREZGENE
  ENSSSCT00000052898.2 UniProtKB/TrEMBL
  ENSSSCT00000057689 ENTREZGENE
  ENSSSCT00000057689.2 UniProtKB/TrEMBL
  ENSSSCT00015029535.1 UniProtKB/TrEMBL
  ENSSSCT00015029665.1 UniProtKB/TrEMBL
  ENSSSCT00025097409.1 UniProtKB/TrEMBL
  ENSSSCT00025097701.1 UniProtKB/TrEMBL
  ENSSSCT00025097997.1 UniProtKB/TrEMBL
  ENSSSCT00030018875.1 UniProtKB/TrEMBL
  ENSSSCT00030018884.1 UniProtKB/TrEMBL
  ENSSSCT00035022368.1 UniProtKB/TrEMBL
  ENSSSCT00035022371.1 UniProtKB/TrEMBL
  ENSSSCT00035022380.1 UniProtKB/TrEMBL
  ENSSSCT00040008325.1 UniProtKB/TrEMBL
  ENSSSCT00040008332.1 UniProtKB/TrEMBL
  ENSSSCT00040008357.1 UniProtKB/TrEMBL
  ENSSSCT00045032256.1 UniProtKB/TrEMBL
  ENSSSCT00045032360.1 UniProtKB/TrEMBL
  ENSSSCT00050025977.1 UniProtKB/TrEMBL
  ENSSSCT00050025999.1 UniProtKB/TrEMBL
  ENSSSCT00050026008.1 UniProtKB/TrEMBL
  ENSSSCT00055038215.1 UniProtKB/TrEMBL
  ENSSSCT00055038356.1 UniProtKB/TrEMBL
  ENSSSCT00060018588.1 UniProtKB/TrEMBL
  ENSSSCT00060018597.1 UniProtKB/TrEMBL
  ENSSSCT00060018607.1 UniProtKB/TrEMBL
  ENSSSCT00065016449.1 UniProtKB/TrEMBL
  ENSSSCT00065016455.1 UniProtKB/TrEMBL
  ENSSSCT00070013505.1 UniProtKB/TrEMBL
  ENSSSCT00070013512.1 UniProtKB/TrEMBL
  ENSSSCT00070013521.1 UniProtKB/TrEMBL
  ENSSSCT00070013525.1 UniProtKB/TrEMBL
  ENSSSCT00070013528.1 UniProtKB/TrEMBL
  ENSSSCT00070013534.1 UniProtKB/TrEMBL
  ENSSSCT00070013557.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Fimbrin/Plastin UniProtKB/TrEMBL
NCBI Gene PLS1 ENTREZGENE
PANTHER PTHR19961 UniProtKB/TrEMBL
  PTHR19961:SF27 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PROSITE ACTININ_1 UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/TrEMBL
  EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
  SSF47576 UniProtKB/TrEMBL
UniProt A0A287BI79 ENTREZGENE
  A0A480K625 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T7K7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T842 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BYG4_PIG UniProtKB/TrEMBL
  A0A8D1XIS4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XLJ1_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287APD4 UniProtKB/TrEMBL
  A0A287BI79 UniProtKB/TrEMBL
VGNC ID VGNC:91572 ENTREZGENE