TIMP4 (TIMP metallopeptidase inhibitor 4) - Rat Genome Database

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Gene: TIMP4 (TIMP metallopeptidase inhibitor 4) Sus scrofa
Analyze
Symbol: TIMP4
Name: TIMP metallopeptidase inhibitor 4
RGD ID: 13879893
Description: ENCODES a protein that exhibits metal ion binding (inferred); metalloendopeptidase inhibitor activity (inferred); peptidase inhibitor activity (inferred); INVOLVED IN Notch signaling pathway (ortholog); ovulation cycle (ortholog); response to cytokine (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Arteriovenous Fistula (ortholog); Breast Neoplasms (ortholog); FOUND IN extracellular space (ortholog); sarcomere (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: metalloproteinase inhibitor 4; TIMP-4; tissue inhibitor of metalloproteinase-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1368,179,806 - 68,190,942 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11368,179,803 - 68,191,199 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21375,371,793 - 75,377,933 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TIMP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1368,179,806 - 68,190,942 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11368,179,803 - 68,191,199 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21375,371,793 - 75,377,933 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TIMP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38312,153,068 - 12,158,912 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl312,153,068 - 12,158,912 (-)EnsemblGRCh38hg38GRCh38
GRCh37312,194,568 - 12,200,412 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36312,169,568 - 12,175,647 (-)NCBINCBI36Build 36hg18NCBI36
Build 34312,169,569 - 12,175,647NCBI
Celera312,132,043 - 12,138,067 (-)NCBICelera
Cytogenetic Map3p25.2NCBI
HuRef312,128,374 - 12,134,601 (-)NCBIHuRef
CHM1_1312,144,898 - 12,151,125 (-)NCBICHM1_1
T2T-CHM13v2.0312,151,357 - 12,157,146 (-)NCBIT2T-CHM13v2.0
Timp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396115,221,405 - 115,229,166 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6115,218,853 - 115,229,166 (-)EnsemblGRCm39 Ensembl
GRCm386115,244,444 - 115,252,205 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6115,241,892 - 115,252,205 (-)EnsemblGRCm38mm10GRCm38
MGSCv376115,195,634 - 115,201,867 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366115,211,438 - 115,217,467 (-)NCBIMGSCv36mm8
Celera6117,084,697 - 117,090,930 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.29NCBI
Timp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84149,978,667 - 149,985,350 (-)NCBIGRCr8
mRatBN7.24148,306,021 - 148,312,558 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4148,304,490 - 148,312,558 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4154,531,322 - 154,537,832 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04150,314,411 - 150,320,921 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04148,938,223 - 148,944,733 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04147,156,948 - 147,163,467 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4147,156,948 - 147,163,467 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04210,445,694 - 210,452,213 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44151,375,072 - 151,381,591 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4137,199,851 - 137,206,370 (-)NCBICelera
Cytogenetic Map4q42NCBI
Timp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542914,685,031 - 14,693,211 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542914,689,016 - 14,693,211 (-)NCBIChiLan1.0ChiLan1.0
TIMP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2212,141,127 - 12,149,262 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1312,144,168 - 12,154,025 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0312,079,195 - 12,087,485 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1312,425,429 - 12,433,192 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl312,425,429 - 12,433,192 (-)Ensemblpanpan1.1panPan2
TIMP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1206,399,522 - 6,405,089 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl206,399,522 - 6,405,089 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha206,435,643 - 6,441,210 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0206,428,241 - 6,462,722 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl206,428,701 - 6,439,507 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1206,146,856 - 6,152,424 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0206,497,799 - 6,503,367 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0206,473,392 - 6,478,960 (+)NCBIUU_Cfam_GSD_1.0
Timp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494217,413,957 - 17,420,254 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366021,489,545 - 1,495,478 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366021,488,993 - 1,496,108 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TIMP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12248,134,133 - 48,140,870 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2248,134,637 - 48,140,600 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041118,360,254 - 118,370,994 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Timp4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624956330,327 - 337,299 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624956331,275 - 341,561 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TIMP4
167 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 1 5 14 12 23 3 6 2

Sequence


Ensembl Acc Id: ENSSSCT00000042009   ⟹   ENSSSCP00000049865
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1368,179,806 - 68,190,942 (-)Ensembl
RefSeq Acc Id: XM_021069344   ⟹   XP_020925003
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11368,179,803 - 68,191,199 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020925003   ⟸   XM_021069344
- UniProtKB: A0A8D0JK42 (UniProtKB/TrEMBL),   A0A287B188 (UniProtKB/TrEMBL),   A0A8D0QDC0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000049865   ⟸   ENSSSCT00000042009
Protein Domains
NTR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033000 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015078357 UniProtKB/TrEMBL
  ENSSSCG00025074514 UniProtKB/TrEMBL
  ENSSSCG00030050103 UniProtKB/TrEMBL
  ENSSSCG00035078946 UniProtKB/TrEMBL
  ENSSSCG00040047958 UniProtKB/TrEMBL
  ENSSSCG00045000989 UniProtKB/TrEMBL
  ENSSSCG00050003767 UniProtKB/TrEMBL
  ENSSSCG00055010016 UniProtKB/TrEMBL
  ENSSSCG00060022216 UniProtKB/TrEMBL
  ENSSSCG00065033365 UniProtKB/TrEMBL
  ENSSSCG00070017271 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000042009 ENTREZGENE
  ENSSSCT00000042009.3 UniProtKB/TrEMBL
  ENSSSCT00015105984.1 UniProtKB/TrEMBL
  ENSSSCT00025102668.1 UniProtKB/TrEMBL
  ENSSSCT00030069813.1 UniProtKB/TrEMBL
  ENSSSCT00030069844.1 UniProtKB/TrEMBL
  ENSSSCT00035107804.1 UniProtKB/TrEMBL
  ENSSSCT00040064555.1 UniProtKB/TrEMBL
  ENSSSCT00040064626.1 UniProtKB/TrEMBL
  ENSSSCT00045001460.1 UniProtKB/TrEMBL
  ENSSSCT00050005087.1 UniProtKB/TrEMBL
  ENSSSCT00055019582.1 UniProtKB/TrEMBL
  ENSSSCT00055019614.1 UniProtKB/TrEMBL
  ENSSSCT00060030151.1 UniProtKB/TrEMBL
  ENSSSCT00065045322.1 UniProtKB/TrEMBL
  ENSSSCT00070034074.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.120 UniProtKB/TrEMBL
  3.90.370.10 UniProtKB/TrEMBL
InterPro Netrin_domain UniProtKB/TrEMBL
  TIMP UniProtKB/TrEMBL
  TIMP-like_OB-fold UniProtKB/TrEMBL
  TIMP_C UniProtKB/TrEMBL
  TIMP_CS UniProtKB/TrEMBL
NCBI Gene TIMP4 ENTREZGENE
PANTHER PTHR11844 UniProtKB/TrEMBL
  PTHR11844:SF26 UniProtKB/TrEMBL
Pfam TIMP UniProtKB/TrEMBL
PROSITE NTR UniProtKB/TrEMBL
  TIMP UniProtKB/TrEMBL
SMART NTR UniProtKB/TrEMBL
Superfamily-SCOP SSF50242 UniProtKB/TrEMBL
UniProt A0A287B188 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UGX1_PIG UniProtKB/TrEMBL
  A0A8D0JK42 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QDC0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1D6C2_PIG UniProtKB/TrEMBL
  A0A8D1YC30_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93997 ENTREZGENE