KERA (keratocan) - Rat Genome Database

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Gene: KERA (keratocan) Sus scrofa
Analyze
Symbol: KERA
Name: keratocan
RGD ID: 13855485
Description: INVOLVED IN cornea development in camera-type eye (inferred); ASSOCIATED WITH arcus senilis (ortholog); cornea plana (ortholog); Cornea Plana 2 (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl591,796,324 - 91,802,468 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1591,794,317 - 91,802,362 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2596,273,468 - 96,281,118 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KERA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl591,796,324 - 91,802,468 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1591,794,317 - 91,802,362 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2596,273,468 - 96,281,118 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KERA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381291,050,491 - 91,058,024 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1291,050,491 - 91,058,024 (-)EnsemblGRCh38hg38GRCh38
GRCh371291,444,268 - 91,451,801 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361289,968,399 - 89,976,262 (-)NCBINCBI36Build 36hg18NCBI36
Build 341289,946,738 - 89,954,599NCBI
Celera1291,115,429 - 91,123,289 (-)NCBICelera
Cytogenetic Map12q21.33NCBI
HuRef1288,512,052 - 88,519,912 (-)NCBIHuRef
CHM1_11291,409,247 - 91,417,110 (-)NCBICHM1_1
T2T-CHM13v2.01291,028,004 - 91,035,533 (-)NCBIT2T-CHM13v2.0
Kera
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391097,442,873 - 97,449,555 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1097,442,741 - 97,449,554 (+)EnsemblGRCm39 Ensembl
GRCm381097,606,962 - 97,613,688 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1097,606,879 - 97,613,692 (+)EnsemblGRCm38mm10GRCm38
MGSCv371097,069,839 - 97,076,322 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361097,036,893 - 97,043,376 (+)NCBIMGSCv36mm8
Celera1099,578,265 - 99,584,748 (+)NCBICelera
Cytogenetic Map10C3NCBI
cM Map1050.34NCBI
Kera
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8734,284,100 - 34,291,555 (+)NCBIGRCr8
mRatBN7.2732,397,382 - 32,404,837 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl732,397,382 - 32,404,837 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx734,364,558 - 34,372,019 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0736,552,782 - 36,560,241 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0736,287,110 - 36,294,571 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0738,858,062 - 38,865,515 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl738,858,062 - 38,865,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0738,899,411 - 38,906,864 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4735,121,875 - 35,129,326 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1735,142,278 - 35,148,859 (+)NCBI
Celera729,434,981 - 29,442,436 (+)NCBICelera
Cytogenetic Map7q13NCBI
Kera
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540528,256,001 - 28,263,600 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540528,256,054 - 28,263,559 (-)NCBIChiLan1.0ChiLan1.0
KERA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21099,083,778 - 99,091,277 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11299,080,172 - 99,087,671 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01288,583,919 - 88,591,418 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11291,899,373 - 91,907,201 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1291,899,381 - 91,911,615 (-)Ensemblpanpan1.1panPan2
KERA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11531,750,768 - 31,758,588 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1531,670,924 - 31,758,871 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1532,205,471 - 32,213,266 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01532,406,626 - 32,414,412 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1532,406,917 - 32,414,688 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11531,699,512 - 31,707,323 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01531,763,195 - 31,770,989 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01532,056,262 - 32,064,052 (-)NCBIUU_Cfam_GSD_1.0
Kera
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494528,424,223 - 28,433,345 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365077,801,577 - 7,811,196 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365077,802,091 - 7,811,123 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KERA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11186,467,315 - 86,475,217 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1186,468,181 - 86,473,097 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037158,710,719 - 158,718,002 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kera
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475015,600,703 - 15,608,320 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475015,600,857 - 15,608,259 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KERA
250 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 3 16 3 2 9 9 16 1 6 1

Sequence


Ensembl Acc Id: ENSSSCT00000001001   ⟹   ENSSSCP00000000979
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl591,796,324 - 91,802,468 (+)Ensembl
RefSeq Acc Id: XM_001927128   ⟹   XP_001927163
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1591,794,317 - 91,802,362 (+)NCBI
Sequence:
RefSeq Acc Id: XP_001927163   ⟸   XM_001927128
- UniProtKB: A0A8D0XHM5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000000979   ⟸   ENSSSCT00000001001
Protein Domains
LRRNT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000917 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00015066181 UniProtKB/TrEMBL
  ENSSSCG00025019246 UniProtKB/TrEMBL
  ENSSSCG00030058951 UniProtKB/TrEMBL
  ENSSSCG00035001255 UniProtKB/TrEMBL
  ENSSSCG00040008210 UniProtKB/TrEMBL
  ENSSSCG00045008001 UniProtKB/TrEMBL
  ENSSSCG00050064571 UniProtKB/TrEMBL
  ENSSSCG00055000737 UniProtKB/TrEMBL
  ENSSSCG00060058618 UniProtKB/TrEMBL
  ENSSSCG00065061178 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001001.5 UniProtKB/TrEMBL
  ENSSSCT00015088590.1 UniProtKB/TrEMBL
  ENSSSCT00025026067.1 UniProtKB/TrEMBL
  ENSSSCT00030082261.1 UniProtKB/TrEMBL
  ENSSSCT00035001541.1 UniProtKB/TrEMBL
  ENSSSCT00040010743.1 UniProtKB/TrEMBL
  ENSSSCT00045013432.1 UniProtKB/TrEMBL
  ENSSSCT00050087917.1 UniProtKB/TrEMBL
  ENSSSCT00055001272.1 UniProtKB/TrEMBL
  ENSSSCT00060079949.1 UniProtKB/TrEMBL
  ENSSSCT00065083816.1 UniProtKB/TrEMBL
  ENSSSCT00065083822.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
  SLRP UniProtKB/TrEMBL
KEGG Report ssc:100157843 UniProtKB/TrEMBL
NCBI Gene KERA ENTREZGENE
PANTHER AGAP008170-PA UniProtKB/TrEMBL
  KERATOCAN UniProtKB/TrEMBL
Pfam LRR_6 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_BAC UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A8D0XHM5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1KSX7_PIG UniProtKB/TrEMBL
  F1SQ08_PIG UniProtKB/TrEMBL
  F4YEA0_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89420 ENTREZGENE