EXOC6 (exocyst complex component 6) - Rat Genome Database

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Gene: EXOC6 (exocyst complex component 6) Sus scrofa
Analyze
Symbol: EXOC6
Name: exocyst complex component 6
RGD ID: 13853807
Description: INVOLVED IN erythrocyte differentiation (ortholog); PARTICIPATES IN insulin signaling pathway; FOUND IN exocyst (inferred); INTERACTS WITH gentamycin
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14104,326,827 - 104,549,636 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114104,326,943 - 104,549,638 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
gentamycin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
exocyst  (IBA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EXOC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14104,326,827 - 104,549,636 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114104,326,943 - 104,549,638 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
EXOC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381092,826,831 - 93,059,490 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1092,826,831 - 93,059,493 (+)EnsemblGRCh38hg38GRCh38
GRCh371094,586,588 - 94,819,247 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361094,584,450 - 94,809,241 (+)NCBINCBI36Build 36hg18NCBI36
Build 341094,598,248 - 94,809,240NCBI
Celera1088,335,925 - 88,560,454 (+)NCBICelera
Cytogenetic Map10q23.33NCBI
HuRef1088,221,556 - 88,446,771 (+)NCBIHuRef
CHM1_11094,877,294 - 95,101,961 (+)NCBICHM1_1
T2T-CHM13v2.01093,706,495 - 93,939,384 (+)NCBIT2T-CHM13v2.0
Exoc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391937,525,181 - 37,672,499 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1937,509,327 - 37,672,507 (+)EnsemblGRCm39 Ensembl
GRCm381937,536,763 - 37,684,052 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1937,520,879 - 37,684,059 (+)EnsemblGRCm38mm10GRCm38
MGSCv371937,624,908 - 37,757,743 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361937,615,562 - 37,748,397 (+)NCBIMGSCv36mm8
Celera1938,347,853 - 38,470,250 (+)NCBICelera
Cytogenetic Map19C2NCBI
cM Map1932.32NCBI
Exoc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81244,727,084 - 244,870,263 (+)NCBIGRCr8
mRatBN7.21235,314,612 - 235,457,824 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1235,300,369 - 235,457,015 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1243,699,707 - 243,842,113 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01250,631,902 - 250,774,276 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01243,470,086 - 243,612,479 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01256,211,879 - 256,369,318 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1256,226,179 - 256,368,813 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01263,708,969 - 263,850,916 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41241,964,047 - 242,008,416 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1232,405,767 - 232,549,626 (+)NCBICelera
Cytogenetic Map1q53NCBI
Exoc6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955425389,940 - 601,304 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955425389,940 - 560,683 (-)NCBIChiLan1.0ChiLan1.0
EXOC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28104,837,864 - 105,095,441 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110104,843,171 - 105,100,759 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01089,569,961 - 89,803,658 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11093,060,721 - 93,316,030 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1093,088,914 - 93,316,030 (+)Ensemblpanpan1.1panPan2
EXOC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1287,190,918 - 7,414,367 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl287,207,194 - 7,414,362 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha287,383,691 - 7,590,914 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0287,450,430 - 7,674,414 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl287,443,006 - 7,674,405 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1287,187,448 - 7,394,618 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0287,222,047 - 7,431,904 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0287,386,421 - 7,593,646 (+)NCBIUU_Cfam_GSD_1.0
Exoc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721340,201,688 - 40,392,331 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366011,831,165 - 1,975,872 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366011,835,469 - 1,976,735 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOC6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1985,967,316 - 86,310,052 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl986,097,257 - 86,310,049 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604846,864,128 - 47,077,094 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Exoc6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247374,055,685 - 4,310,478 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247374,043,672 - 4,311,147 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EXOC6
4460 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000011461   ⟹   ENSSSCP00000011162
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14104,342,240 - 104,550,642 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000032502   ⟹   ENSSSCP00000027348
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14104,326,827 - 104,549,635 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000042930   ⟹   ENSSSCP00000059530
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14104,342,247 - 104,549,628 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000051724   ⟹   ENSSSCP00000042391
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14104,342,240 - 104,549,636 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000069161   ⟹   ENSSSCP00000073366
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14104,342,290 - 104,514,719 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000069490   ⟹   ENSSSCP00000073700
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14104,342,247 - 104,549,628 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000090869   ⟹   ENSSSCP00000066193
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14104,342,279 - 104,514,024 (+)Ensembl
RefSeq Acc Id: XM_021073792   ⟹   XP_020929451
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114104,326,943 - 104,549,638 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073793   ⟹   XP_020929452
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114104,342,250 - 104,549,629 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073794   ⟹   XP_020929453
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114104,326,945 - 104,549,629 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073795   ⟹   XP_020929454
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114104,342,250 - 104,549,634 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020929451   ⟸   XM_021073792
- Peptide Label: isoform X1
- UniProtKB: A0A4X1UWE4 (UniProtKB/TrEMBL),   A0A8D1X9X2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929453   ⟸   XM_021073794
- Peptide Label: isoform X3
- UniProtKB: A0A8D1DE47 (UniProtKB/TrEMBL),   A0A480LBS3 (UniProtKB/TrEMBL),   A0A4X1UWE4 (UniProtKB/TrEMBL),   A0A8D1X9X2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929454   ⟸   XM_021073795
- Peptide Label: isoform X4
- UniProtKB: A0A4X1UUI0 (UniProtKB/TrEMBL),   A0A287BSA3 (UniProtKB/TrEMBL),   A0A480IUJ5 (UniProtKB/TrEMBL),   A0A4X1UZF9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929452   ⟸   XM_021073793
- Peptide Label: isoform X2
- UniProtKB: A0A480ZL24 (UniProtKB/TrEMBL),   A0A4X1UUI5 (UniProtKB/TrEMBL),   A0A4X1UZF9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000066193   ⟸   ENSSSCT00000090869
Ensembl Acc Id: ENSSSCP00000042391   ⟸   ENSSSCT00000051724
Ensembl Acc Id: ENSSSCP00000011162   ⟸   ENSSSCT00000011461
Ensembl Acc Id: ENSSSCP00000073366   ⟸   ENSSSCT00000069161
Ensembl Acc Id: ENSSSCP00000073700   ⟸   ENSSSCT00000069490
Ensembl Acc Id: ENSSSCP00000059530   ⟸   ENSSSCT00000042930
Ensembl Acc Id: ENSSSCP00000027348   ⟸   ENSSSCT00000032502

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010473 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030056689 UniProtKB/TrEMBL
  ENSSSCG00035011296 UniProtKB/TrEMBL
  ENSSSCG00040010825 UniProtKB/TrEMBL
  ENSSSCG00045001791 UniProtKB/TrEMBL
  ENSSSCG00050073796 UniProtKB/TrEMBL
  ENSSSCG00055022677 UniProtKB/TrEMBL
  ENSSSCG00060032125 UniProtKB/TrEMBL
  ENSSSCG00065003318 UniProtKB/TrEMBL
  ENSSSCG00070020251 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000032502 ENTREZGENE
  ENSSSCT00000032502.4 UniProtKB/TrEMBL
  ENSSSCT00000042930 ENTREZGENE
  ENSSSCT00000042930.3 UniProtKB/TrEMBL
  ENSSSCT00000051724.3 UniProtKB/TrEMBL
  ENSSSCT00000069490.2 UniProtKB/TrEMBL
  ENSSSCT00000090869.1 UniProtKB/TrEMBL
  ENSSSCT00030079010.1 UniProtKB/TrEMBL
  ENSSSCT00035014167.1 UniProtKB/TrEMBL
  ENSSSCT00035014174.1 UniProtKB/TrEMBL
  ENSSSCT00035014207.1 UniProtKB/TrEMBL
  ENSSSCT00035014227.1 UniProtKB/TrEMBL
  ENSSSCT00035014248.1 UniProtKB/TrEMBL
  ENSSSCT00035014253.1 UniProtKB/TrEMBL
  ENSSSCT00040014113.1 UniProtKB/TrEMBL
  ENSSSCT00040014150.1 UniProtKB/TrEMBL
  ENSSSCT00040014231.1 UniProtKB/TrEMBL
  ENSSSCT00040014296.1 UniProtKB/TrEMBL
  ENSSSCT00040014368.1 UniProtKB/TrEMBL
  ENSSSCT00040014385.1 UniProtKB/TrEMBL
  ENSSSCT00045002822.1 UniProtKB/TrEMBL
  ENSSSCT00045002835.1 UniProtKB/TrEMBL
  ENSSSCT00045002850.1 UniProtKB/TrEMBL
  ENSSSCT00050100956.1 UniProtKB/TrEMBL
  ENSSSCT00050100957.1 UniProtKB/TrEMBL
  ENSSSCT00050100959.1 UniProtKB/TrEMBL
  ENSSSCT00055044541.1 UniProtKB/TrEMBL
  ENSSSCT00055044738.1 UniProtKB/TrEMBL
  ENSSSCT00055044926.1 UniProtKB/TrEMBL
  ENSSSCT00060043465.1 UniProtKB/TrEMBL
  ENSSSCT00060043470.1 UniProtKB/TrEMBL
  ENSSSCT00060043474.1 UniProtKB/TrEMBL
  ENSSSCT00065004497.1 UniProtKB/TrEMBL
  ENSSSCT00065004532.1 UniProtKB/TrEMBL
  ENSSSCT00070040242.1 UniProtKB/TrEMBL
  ENSSSCT00070040250.1 UniProtKB/TrEMBL
  ENSSSCT00070040254.1 UniProtKB/TrEMBL
  ENSSSCT00070040261.1 UniProtKB/TrEMBL
  ENSSSCT00070040273.1 UniProtKB/TrEMBL
  ENSSSCT00070040277.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.357.30 UniProtKB/TrEMBL
  1.20.58.670 UniProtKB/TrEMBL
InterPro EXOC6/Sec15 UniProtKB/TrEMBL
  EXOC6/Sec15_C_dom1 UniProtKB/TrEMBL
  EXOC6/Sec15_C_dom2 UniProtKB/TrEMBL
  EXOC6_Sec15_N UniProtKB/TrEMBL
  Sec15_C UniProtKB/TrEMBL
NCBI Gene EXOC6 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 6 UniProtKB/TrEMBL
  PTHR12702 UniProtKB/TrEMBL
Pfam EXOC6_Sec15_N UniProtKB/TrEMBL
  Sec15 UniProtKB/TrEMBL
PIRSF Sec15 UniProtKB/TrEMBL
UniProt A0A287AET8_PIG UniProtKB/TrEMBL
  A0A287BSA3 ENTREZGENE
  A0A480IUJ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A480LBS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A480ZL24 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UUI0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UUI5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UWE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UYF5_PIG UniProtKB/TrEMBL
  A0A4X1UZF9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UZH5_PIG UniProtKB/TrEMBL
  A0A5G2QW84_PIG UniProtKB/TrEMBL
  A0A5G2RBI6_PIG UniProtKB/TrEMBL
  A0A8D0YQ56_PIG UniProtKB/TrEMBL
  A0A8D0YRF6_PIG UniProtKB/TrEMBL
  A0A8D1DDL8_PIG UniProtKB/TrEMBL
  A0A8D1DDW4_PIG UniProtKB/TrEMBL
  A0A8D1DE47 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1U8X0_PIG UniProtKB/TrEMBL
  A0A8D1X9X2 ENTREZGENE, UniProtKB/TrEMBL
  I3LTA4_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287BSA3 UniProtKB/TrEMBL
VGNC ID VGNC:87832 ENTREZGENE