CCT3 (chaperonin containing TCP1 subunit 3) - Rat Genome Database

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Gene: CCT3 (chaperonin containing TCP1 subunit 3) Sus scrofa
Analyze
Symbol: CCT3
Name: chaperonin containing TCP1 subunit 3
RGD ID: 13853131
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ATP-dependent protein folding chaperone (inferred); INVOLVED IN binding of sperm to zona pellucida (ortholog); positive regulation of protein localization to Cajal body (ortholog); positive regulation of telomerase RNA localization to Cajal body (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN chaperonin-containing T-complex (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CCT-gamma; CCTG; matricin; T-complex protein 1 subunit gamma; TCP-1-gamma
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,733,918 - 93,753,340 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,733,967 - 93,753,340 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,435,570 - 102,453,406 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CCT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,733,918 - 93,753,340 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,733,967 - 93,753,340 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,435,570 - 102,453,406 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,308,968 - 156,338,292 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,308,968 - 156,367,873 (-)EnsemblGRCh38hg38GRCh38
GRCh371156,278,759 - 156,308,083 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,545,376 - 154,574,819 (-)NCBINCBI36Build 36hg18NCBI36
Build 341153,091,832 - 153,121,121NCBI
Celera1129,351,733 - 129,381,131 (-)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,638,812 - 127,668,494 (-)NCBIHuRef
CHM1_11157,674,664 - 157,704,561 (-)NCBICHM1_1
T2T-CHM13v2.01155,447,437 - 155,476,903 (-)NCBIT2T-CHM13v2.0
Cct3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,204,442 - 88,229,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,204,423 - 88,229,074 (+)EnsemblGRCm39 Ensembl
GRCm38388,297,135 - 88,321,766 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,297,116 - 88,321,767 (+)EnsemblGRCm38mm10GRCm38
MGSCv37388,101,057 - 88,125,688 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,383,062 - 88,407,693 (+)NCBIMGSCv36mm8
Celera388,336,705 - 88,361,340 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.79NCBI
Cct3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,063,529 - 176,088,180 (+)NCBIGRCr8
mRatBN7.22173,765,701 - 173,790,353 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,765,698 - 173,790,757 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2180,910,314 - 180,934,758 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02178,932,672 - 178,957,116 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,532,533 - 173,557,196 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,669,051 - 187,693,610 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,668,796 - 187,693,610 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,072,068 - 207,096,553 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,381,044 - 180,434,152 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,331,149 - 180,384,258 (+)NCBI
Celera2167,711,584 - 167,735,276 (+)NCBICelera
Cytogenetic Map2q34NCBI
Cct3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,444,988 - 2,461,113 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,444,988 - 2,460,976 (-)NCBIChiLan1.0ChiLan1.0
CCT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,508,565 - 93,536,333 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,240,518 - 93,268,250 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,652,058 - 131,679,802 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,482,012 - 135,508,983 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,481,427 - 135,508,983 (-)Ensemblpanpan1.1panPan2
CCT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,566,274 - 41,583,903 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,566,292 - 41,584,863 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,054,446 - 41,072,072 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,431,013 - 41,448,650 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,431,096 - 41,449,272 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,212,433 - 41,230,036 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,265,635 - 41,283,249 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,549,686 - 41,567,311 (+)NCBIUU_Cfam_GSD_1.0
Cct3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,506,956 - 26,523,883 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,537,015 - 5,554,384 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,537,338 - 5,554,384 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,518,729 - 7,545,296 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,518,846 - 7,545,677 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,819,515 - 6,846,680 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cct3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,575,562 - 1,592,594 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,575,560 - 1,592,540 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCT3
461 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000007106   ⟹   ENSSSCP00000006914
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl493,734,094 - 93,753,340 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000045139   ⟹   ENSSSCP00000045371
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl493,733,917 - 93,753,337 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000047930   ⟹   ENSSSCP00000047915
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl493,734,027 - 93,753,337 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000070478   ⟹   ENSSSCP00000060894
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl493,733,918 - 93,753,337 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000071071   ⟹   ENSSSCP00000071562
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl493,738,472 - 93,753,340 (+)Ensembl
RefSeq Acc Id: NM_001244180   ⟹   NP_001231109
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1493,733,967 - 93,753,340 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001231109   ⟸   NM_001244180
- UniProtKB: A0A287AMZ2 (UniProtKB/TrEMBL),   A0A4X1VT61 (UniProtKB/TrEMBL),   A0A8D1WZF0 (UniProtKB/TrEMBL),   A0A8D0VM93 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000045371   ⟸   ENSSSCT00000045139
Ensembl Acc Id: ENSSSCP00000060894   ⟸   ENSSSCT00000070478
Ensembl Acc Id: ENSSSCP00000071562   ⟸   ENSSSCT00000071071
Ensembl Acc Id: ENSSSCP00000006914   ⟸   ENSSSCT00000007106
Ensembl Acc Id: ENSSSCP00000047915   ⟸   ENSSSCT00000047930


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006487 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015056232 UniProtKB/TrEMBL
  ENSSSCG00025003858 UniProtKB/TrEMBL
  ENSSSCG00030013780 UniProtKB/TrEMBL
  ENSSSCG00035029110 UniProtKB/TrEMBL
  ENSSSCG00040052117 UniProtKB/TrEMBL
  ENSSSCG00045030774 UniProtKB/TrEMBL
  ENSSSCG00050010010 UniProtKB/TrEMBL
  ENSSSCG00055000876 UniProtKB/TrEMBL
  ENSSSCG00060077671 UniProtKB/TrEMBL
  ENSSSCG00065029919 UniProtKB/TrEMBL
  ENSSSCG00070027536 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007106.5 UniProtKB/TrEMBL
  ENSSSCT00000047930 ENTREZGENE
  ENSSSCT00000047930.3 UniProtKB/TrEMBL
  ENSSSCT00000070478.2 UniProtKB/TrEMBL
  ENSSSCT00000071071.2 UniProtKB/TrEMBL
  ENSSSCT00015076315.1 UniProtKB/TrEMBL
  ENSSSCT00015076410.1 UniProtKB/TrEMBL
  ENSSSCT00015076663.1 UniProtKB/TrEMBL
  ENSSSCT00015076804.1 UniProtKB/TrEMBL
  ENSSSCT00025005218.1 UniProtKB/TrEMBL
  ENSSSCT00025005256.1 UniProtKB/TrEMBL
  ENSSSCT00025005297.1 UniProtKB/TrEMBL
  ENSSSCT00025005358.1 UniProtKB/TrEMBL
  ENSSSCT00030018971.1 UniProtKB/TrEMBL
  ENSSSCT00030018984.1 UniProtKB/TrEMBL
  ENSSSCT00030019001.1 UniProtKB/TrEMBL
  ENSSSCT00030019020.1 UniProtKB/TrEMBL
  ENSSSCT00035038600.1 UniProtKB/TrEMBL
  ENSSSCT00035038611.1 UniProtKB/TrEMBL
  ENSSSCT00040071004.1 UniProtKB/TrEMBL
  ENSSSCT00040071106.1 UniProtKB/TrEMBL
  ENSSSCT00040071215.1 UniProtKB/TrEMBL
  ENSSSCT00040071452.1 UniProtKB/TrEMBL
  ENSSSCT00040071605.1 UniProtKB/TrEMBL
  ENSSSCT00045052788.1 UniProtKB/TrEMBL
  ENSSSCT00045053014.1 UniProtKB/TrEMBL
  ENSSSCT00045053229.1 UniProtKB/TrEMBL
  ENSSSCT00050013583.1 UniProtKB/TrEMBL
  ENSSSCT00050013614.1 UniProtKB/TrEMBL
  ENSSSCT00050013645.1 UniProtKB/TrEMBL
  ENSSSCT00050013677.1 UniProtKB/TrEMBL
  ENSSSCT00055001639.1 UniProtKB/TrEMBL
  ENSSSCT00055001677.1 UniProtKB/TrEMBL
  ENSSSCT00055001723.1 UniProtKB/TrEMBL
  ENSSSCT00055001756.1 UniProtKB/TrEMBL
  ENSSSCT00060107029.1 UniProtKB/TrEMBL
  ENSSSCT00060107043.1 UniProtKB/TrEMBL
  ENSSSCT00060107064.1 UniProtKB/TrEMBL
  ENSSSCT00060107087.1 UniProtKB/TrEMBL
  ENSSSCT00065040377.1 UniProtKB/TrEMBL
  ENSSSCT00065040385.1 UniProtKB/TrEMBL
  ENSSSCT00065040398.1 UniProtKB/TrEMBL
  ENSSSCT00065040402.1 UniProtKB/TrEMBL
  ENSSSCT00070055206.1 UniProtKB/TrEMBL
  ENSSSCT00070055207.1 UniProtKB/TrEMBL
  ENSSSCT00070055209.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.560.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.260.10 UniProtKB/TrEMBL
  3.50.7.10 UniProtKB/TrEMBL
InterPro Chap_CCT_gamma UniProtKB/TrEMBL
  Chaperone_TCP-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chaperonin_TCP-1_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cpn60/TCP-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GroEL-like_apical_dom_sf UniProtKB/TrEMBL
  GROEL-like_equatorial_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TCP-1-like_intermed_sf UniProtKB/TrEMBL
  TCP-1_chaperonin UniProtKB/TrEMBL
  thermosome_alpha UniProtKB/TrEMBL
KEGG Report ssc:100154317 UniProtKB/TrEMBL
NCBI Gene CCT3 ENTREZGENE
PANTHER PTHR11353 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cpn60_TCP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS TCOMPLEXTCP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TCP1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TCP1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TCP1_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48592 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52029 UniProtKB/TrEMBL
  SSF54849 UniProtKB/TrEMBL
UniProt A0A287AMZ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AUX8_PIG UniProtKB/TrEMBL
  A0A4X1VT61 ENTREZGENE
  A0A4X1VYZ0_PIG UniProtKB/TrEMBL
  A0A4X1W018_PIG UniProtKB/TrEMBL
  A0A5G2Q9C7_PIG UniProtKB/TrEMBL
  A0A5G2R2Z6_PIG UniProtKB/TrEMBL
  A0A8D0QSA0_PIG UniProtKB/TrEMBL
  A0A8D0VM93 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1F3W1_PIG UniProtKB/TrEMBL
  A0A8D1KEF5_PIG UniProtKB/TrEMBL
  A0A8D1KEH3_PIG UniProtKB/TrEMBL
  A0A8D1WZF0 ENTREZGENE, UniProtKB/TrEMBL
  Q29068 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A4X1VT61 UniProtKB/TrEMBL
  F1RP17 UniProtKB/TrEMBL
VGNC ID VGNC:86381 ENTREZGENE