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Gene: HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1) Sus scrofa

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Symbol:

HNRNPA1

Name:

heterogeneous nuclear ribonucleoprotein A1 (Ensembl:heteroous nuclear ribonucleoprotein A1)

RGD ID:

13846005

Description:

ENCODES a protein that exhibits DNA binding (ortholog); DNA/DNA annealing activity (ortholog); identical protein binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); cellular response to epidermal growth factor stimulus (ortholog); cellular response to potassium ion (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 20 (ortholog); Animal Disease Models (ortholog); FOUND IN nucleoplasmic periphery of the nuclear pore complex (ortholog); synapse (ortholog)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

HNRPA1; ROA1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	19,485,096 - 19,491,417 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	19,485,033 - 19,491,418 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	20,329,539 - 20,334,145 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

amyotrophic lateral sclerosis type 20 (ISO)

Animal Disease Models (ISO)

Animal Mammary Neoplasms (ISO)

carcinoma (ISO)

Colorectal Neoplasms (ISO)

distal myopathy 3 (ISO)

Experimental Mammary Neoplasms (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 3 (ISO)

inclusion body myopathy with Paget disease of bone and frontotemporal dementia (ISO)

lung adenocarcinoma (ISO)

lung non-small cell carcinoma (ISO)

Neurodevelopmental Disorders (ISO)

primary progressive multiple sclerosis (ISO)

relapsing-remitting multiple sclerosis (ISO)

secondary progressive multiple sclerosis (ISO)

tropical spastic paraparesis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alternative mRNA splicing, via spliceosome (ISO)

cellular response to epidermal growth factor stimulus (ISO)

cellular response to glucose starvation (IEA)

cellular response to potassium ion (ISO)

cellular response to sodium arsenite (IEA)

import into nucleus (IEA)

lung development (ISO)

male gonad development (ISO)

mRNA splicing, via spliceosome (IBA)

negative regulation of telomere maintenance via telomerase (IEA)

nuclear export (IEA)

positive regulation of action potential (ISO)

positive regulation of gene expression (ISO)

positive regulation of telomere maintenance via telomerase (IEA)

regulation of alternative mRNA splicing, via spliceosome (IEA)

regulation of RNA splicing (IEA)

response to endoplasmic reticulum stress (ISO)

RNA splicing (ISO)

symbiont-mediated transformation of host cell (ISO)

Cellular Component

catalytic step 2 spliceosome (IBA,IEA)

cytoplasm (IEA)

nucleoplasm (IEA)

nucleoplasmic periphery of the nuclear pore complex (ISO)

nucleus (IEA)

ribonucleoprotein complex (IEA)

spliceosomal complex (IEA)

synapse (ISO)

Molecular Function

DNA binding (ISO)

DNA/DNA annealing activity (ISO)

G-rich strand telomeric DNA binding (IEA)

identical protein binding (ISO)

miRNA binding (IEA)

mRNA 3'-UTR binding (ISO)

mRNA binding (ISO)

pre-mRNA binding (IEA)

protein binding (ISO)

protein domain specific binding (IEA)

RNA binding (IEA,ISO)

RNA strand annealing activity (ISO)

sequence-specific mRNA binding (ISO)

single-stranded DNA binding (IEA)

single-stranded RNA binding (ISO)

telomeric repeat-containing RNA binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:17610147	PMID:22301074

Genomics

Comparative Map Data

HNRNPA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	19,485,096 - 19,491,417 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	19,485,033 - 19,491,418 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	20,329,539 - 20,334,145 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HNRNPA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	54,280,726 - 54,287,087 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	54,280,193 - 54,287,088 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	54,674,510 - 54,680,871 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	52,960,755 - 52,965,297 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	52,960,754 - 52,965,297	NCBI
Celera	12	54,326,467 - 54,331,009 (+)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	51,713,759 - 51,718,301 (+)	NCBI		HuRef
CHM1_1	12	54,641,226 - 54,645,768 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	54,247,303 - 54,253,664 (+)	NCBI		T2T-CHM13v2.0

Hnrnpa1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	103,148,840 - 103,155,119 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	103,148,859 - 103,155,119 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	103,239,943 - 103,246,698 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	103,240,432 - 103,246,692 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	103,070,863 - 103,075,386 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	103,068,466 - 103,072,989 (+)	NCBI		MGSCv36	mm8
Celera	15	105,402,021 - 105,406,544 (+)	NCBI		Celera
Cytogenetic Map	15	F3	NCBI
cM Map	15	58.58	NCBI

Hnrnpa1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	136,253,633 - 136,260,085 (+)	NCBI		GRCr8
mRatBN7.2	7	134,375,318 - 134,381,610 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	134,375,150 - 134,381,609 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	136,130,862 - 136,135,162 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	138,360,240 - 138,364,540 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	138,346,358 - 138,350,660 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	144,865,302 - 144,871,592 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	144,865,608 - 144,871,585 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	142,647,071 - 142,652,967 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	142,150,229 - 142,154,520 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	142,230,417 - 142,234,709 (+)	NCBI
Celera	7	130,801,278 - 130,805,569 (+)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

Hnrnpa1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955458	1,530,163 - 1,536,874 (+)	NCBI	ChiLan1.0	ChiLan1.0

HNRNPA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	39,884,192 - 39,891,112 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	39,880,960 - 39,887,881 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	34,456,900 - 34,463,317 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	35,182,164 - 35,188,651 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	35,184,943 - 35,188,443 (-)	Ensembl	panpan1.1		panPan2

HNRNPA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	1,013,459 - 1,020,083 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	1,015,868 - 1,019,891 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	45,235,341 - 45,240,080 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	1,012,273 - 1,017,012 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	1,012,271 - 1,016,841 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	1,031,242 - 1,035,976 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	1,010,967 - 1,017,580 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	45,639,146 - 45,643,882 (+)	NCBI		UU_Cfam_GSD_1.0

Hnrnpa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	61,677,106 - 61,683,541 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936512	11,481,017 - 11,487,737 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HNRNPA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	50,397,173 - 50,403,192 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	50,396,888 - 50,400,802 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	195,638,486 - 195,645,432 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hnrnpa1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624904	2,314,249 - 2,318,791 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624904	2,314,197 - 2,320,900 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in HNRNPA1
230 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001077218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005663854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005663855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002343824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002343825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK238637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK351950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK391676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK392009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK397954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU694683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ972970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01033174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KM051509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000000309 ⟹ ENSSSCP00000000304

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	19,485,096 - 19,491,417 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000058552 ⟹ ENSSSCP00000033484

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	19,485,096 - 19,491,416 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000071718 ⟹ ENSSSCP00000062027

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	19,485,096 - 19,491,417 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000075652 ⟹ ENSSSCP00000061356

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	19,485,096 - 19,489,556 (+)	Ensembl

RefSeq Acc Id:

NM_001077218 ⟹ NP_001070686

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	19,485,177 - 19,488,587 (+)	NCBI

Sequence:

show sequence

ATGTCTAAGTCAGAGTCTCCCAAAGAGCCCGAACAGCTGCGGAAGCTCTTCATCGGAGGTTTGA
GCTTTGAAACAACCGATGAGAGTCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACAGACTG
TGTGGTAATGAGGGACCCAAACACCAAGCGCTCCAGAGGTTTCGGGTTTGTCACGTATGCCACT
GTGGAGGAGGTGGATGCAGCCATGAATGCAAGGCCGCACAAGGTGGATGGAAGAGTTGTGGAAC
CAAAGAGGGCCGTCTCAAGAGAAGATTCTCAAAGACCTGGTGCCCACTTAACTGTGAAAAAGAT
TTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTAAGAGATTATTTTGAACAGTAT
GGGAAAATCGAAGTGATTGAAATCATGACGGACAGGGGCAGTGGCAAAAAGAGAGGTTTTGCTT
TTGTAACTTTTGATGACCATGACTCCGTAGACAAGATTGTCATTCAGAAATACCACACTGTGAA
TGGCCACAACTGTGAAGTGAGGAAAGCCCTATCCAAGCAAGAGATGGCTAGTGCTTCATCCAGC
CAAAGAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGTGGTTTTGGTGGAAATG
ACAACTTTGGTCGTGGGGGAAACTTTAGTGGTCGAGGTGGCTTTGGTGGCAGTCGTGGTGGTGG
TGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGACGGAAGCAATTTTGGAGGT
GGCGGAAGCTACAATGATTTTGGCAATTACAACAATCAATCTTCAAATTTTGGACCCATGAAAG
GAGGAAATTTTGGAGGCAGAAGTTCTGGCCCTTATGGTGGTGGAGGCCAATACTTTGCCAAACC
ACGAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGGTTT
TAA

hide sequence

RefSeq Acc Id:

XM_005663854 ⟹ XP_005663911

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	19,485,033 - 19,489,559 (+)	NCBI

Sequence:

show sequence

GGAGTCTACCAATGCCGAACGCGAGGAGGCGGGATAAAAAAGCGAGGCCGAAGGTAGGCTGGCA
GACTCGTTCGTTAGATTACTCCTTTCTGCCCCCGGACGCCGCCGAGTAAGCATCGTTGTAACCT
CCTCCCCACTACCGTCATGTCTAAGTCAGAGTCTCCCAAAGAGCCCGAACAGCTGCGGAAGCTC
TTCATCGGAGGTTTGAGCTTTGAAACAACCGATGAGAGTCTGAGGAGCCATTTTGAGCAATGGG
GAACGCTCACAGACTGTGTGGTAATGAGGGACCCAAACACCAAGCGCTCCAGAGGTTTCGGGTT
TGTCACGTATGCCACTGTGGAGGAGGTGGATGCAGCCATGAATGCAAGGCCGCACAAGGTGGAT
GGAAGAGTTGTGGAACCAAAGAGGGCCGTCTCAAGAGAAGATTCTCAAAGACCTGGTGCCCACT
TAACTGTGAAAAAGATTTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTAAGAGA
TTATTTTGAACAGTATGGGAAAATCGAAGTGATTGAAATCATGACGGACAGGGGCAGTGGCAAA
AAGAGAGGTTTTGCTTTTGTAACTTTTGATGACCATGACTCCGTAGACAAGATTGTCATTCAGA
AATACCACACTGTGAATGGCCACAACTGTGAAGTGAGGAAAGCCCTATCCAAGCAAGAGATGGC
TAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGT
GGTTTTGGTGGAAATGACAACTTTGGTCGTGGGGGAAACTTTAGTGGTCGAGGTGGCTTTGGTG
GCAGTCGTGGTGGTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGACGG
TGGTTATGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAG
GGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAG
GAGGCGGAGGCGGCTTTGGCGGTGGTAGTGGAAGCAATTTTGGAGGTGGCGGAAGCTACAATGA
TTTTGGCAATTACAACAATCAATCTTCAAATTTTGGACCCATGAAAGGAGGAAATTTTGGAGGC
AGAAGTTCTGGCCCTTATGGTGGTGGAGGCCAATACTTTGCCAAACCACGAAACCAAGGTGGCT
ATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGGTTTTAATTATTACTGCCAGG
AAACAAAGCTTAGCAGGAGAGGAGAGCCAGAGAAGTGACAGGGAAGCTACAGGTTACAACAGAT
TTGTGAACTCAGCCAAGCACAGTGGTGGCAGGGCCTAGCTGCTACAAAGAAGACATGTTTTAGA
CAATACTCATGTGTATGGGCAAAAAAACTCGAGGACTGTATTTGTGACTAATTGTATAACAGGT
TATTTTAGTTTCTGTTCTGTGGAAAGTGTAAAGCATTCCAACAAAGGGTTTTAATGTAGATTTT
TTTTTTTTTTTTTTTTTTTGCACCCATGCTGTTGATTGCTAAATGTAATAGTCTGATCATGACG
CTGAATAAATGTGTCTTTTTTTAAATGTGCTGTGTAAAGTTAGTCTACTCTGAAGCCATTTTGG
TAAATTACCCCAACAGTGTGAAGTTAGAATACCTTCAGGGTGATGCCAGGTTCCATTTGAAATT
TACAACCTGCTTGGGTGGAGAAGCCCTTGTCTTCAGAAACCTTGGTGTAGTTGAACTGACAGTT
AACTGTGTTGTGACCTGGAGTTCACCCTTAAAGGGGCCACCCAAGCAAAGTCATGGAGGTTTTT
TTTGGTTATTAATATGATTGTTGGCACATCCTATGCAATATATCTAAATTGAATTATGGTACCA
GATAAAGTTATAGATGAGAATGAAGCTTGTGTATCATCCATTATCATGTGTAATCAATAAACGA
TTTAATACCCTCTTGAA

hide sequence

RefSeq Acc Id:

XM_005663855 ⟹ XP_005663912

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	19,485,033 - 19,489,559 (+)	NCBI

Sequence:

show sequence

GGAGTCTACCAATGCCGAACGCGAGGAGGCGGGATAAAAAAGCGAGGCCGAAGGTAGGCTGGCA
GACTCGTTCGTTAGATTACTCCTTTCTGCCCCCGGACGCCGCCGAGTAAGCATCGTTGTAACCT
CCTCCCCACTACCGTCATGTCTAAGTCAGAGTCTCCCAAAGAGCCCGAACAGCTGCGGAAGCTC
TTCATCGGAGGTTTGAGCTTTGAAACAACCGATGAGAGTCTGAGGAGCCATTTTGAGCAATGGG
GAACGCTCACAGACTGTGTGGTAATGAGGGACCCAAACACCAAGCGCTCCAGAGGTTTCGGGTT
TGTCACGTATGCCACTGTGGAGGAGGTGGATGCAGCCATGAATGCAAGGCCGCACAAGGTGGAT
GGAAGAGTTGTGGAACCAAAGAGGGCCGTCTCAAGAGAAGATTCTCAAAGACCTGGTGCCCACT
TAACTGTGAAAAAGATTTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTAAGAGA
TTATTTTGAACAGTATGGGAAAATCGAAGTGATTGAAATCATGACGGACAGGGGCAGTGGCAAA
AAGAGAGGTTTTGCTTTTGTAACTTTTGATGACCATGACTCCGTAGACAAGATTGTCATTCAGA
AATACCACACTGTGAATGGCCACAACTGTGAAGTGAGGAAAGCCCTATCCAAGCAAGAGATGGC
TAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGT
GGTTTTGGTGGAAATGACAACTTTGGTCGTGGGGGAAACTTTAGTGGTCGAGGTGGCTTTGGTG
GCAGTCGTGGTGGTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGACGG
AAGCAATTTTGGAGGTGGCGGAAGCTACAATGATTTTGGCAATTACAACAATCAATCTTCAAAT
TTTGGACCCATGAAAGGAGGAAATTTTGGAGGCAGAAGTTCTGGCCCTTATGGTGGTGGAGGCC
AATACTTTGCCAAACCACGAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGG
CAGTGGCAGAAGGTTTTAATTATTACTGCCAGGAAACAAAGCTTAGCAGGAGAGGAGAGCCAGA
GAAGTGACAGGGAAGCTACAGGTTACAACAGATTTGTGAACTCAGCCAAGCACAGTGGTGGCAG
GGCCTAGCTGCTACAAAGAAGACATGTTTTAGACAATACTCATGTGTATGGGCAAAAAAACTCG
AGGACTGTATTTGTGACTAATTGTATAACAGGTTATTTTAGTTTCTGTTCTGTGGAAAGTGTAA
AGCATTCCAACAAAGGGTTTTAATGTAGATTTTTTTTTTTTTTTTTTTTTTTGCACCCATGCTG
TTGATTGCTAAATGTAATAGTCTGATCATGACGCTGAATAAATGTGTCTTTTTTTAAATGTGCT
GTGTAAAGTTAGTCTACTCTGAAGCCATTTTGGTAAATTACCCCAACAGTGTGAAGTTAGAATA
CCTTCAGGGTGATGCCAGGTTCCATTTGAAATTTACAACCTGCTTGGGTGGAGAAGCCCTTGTC
TTCAGAAACCTTGGTGTAGTTGAACTGACAGTTAACTGTGTTGTGACCTGGAGTTCACCCTTAA
AGGGGCCACCCAAGCAAAGTCATGGAGGTTTTTTTTGGTTATTAATATGATTGTTGGCACATCC
TATGCAATATATCTAAATTGAATTATGGTACCAGATAAAGTTATAGATGAGAATGAAGCTTGTG
TATCATCCATTATCATGTGTAATCAATAAACGATTTAATACCCTCTTGAA

hide sequence

RefSeq Acc Id:

XR_002343824

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	19,485,033 - 19,491,418 (+)	NCBI

Sequence:

show sequence

GGAGTCTACCAATGCCGAACGCGAGGAGGCGGGATAAAAAAGCGAGGCCGAAGGTAGGCTGGCA
GACTCGTTCGTTAGATTACTCCTTTCTGCCCCCGGACGCCGCCGAGTAAGCATCGTTGTAACCT
CCTCCCCACTACCGTCATGTCTAAGTCAGAGTCTCCCAAAGAGCCCGAACAGCTGCGGAAGCTC
TTCATCGGAGGTTTGAGCTTTGAAACAACCGATGAGAGTCTGAGGAGCCATTTTGAGCAATGGG
GAACGCTCACAGACTGTGTGGTAATGAGGGACCCAAACACCAAGCGCTCCAGAGGTTTCGGGTT
TGTCACGTATGCCACTGTGGAGGAGGTGGATGCAGCCATGAATGCAAGGCCGCACAAGGTGGAT
GGAAGAGTTGTGGAACCAAAGAGGGCCGTCTCAAGAGAAGATTCTCAAAGACCTGGTGCCCACT
TAACTGTGAAAAAGATTTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTAAGAGA
TTATTTTGAACAGTATGGGAAAATCGAAGTGATTGAAATCATGACGGACAGGGGCAGTGGCAAA
AAGAGAGGTTTTGCTTTTGTAACTTTTGATGACCATGACTCCGTAGACAAGATTGTCATTCAGA
AATACCACACTGTGAATGGCCACAACTGTGAAGTGAGGAAAGCCCTATCCAAGCAAGAGATGGC
TAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGT
GGTTTTGGTGGAAATGACAACTTTGGTCGTGGGGGAAACTTTAGTGGTCGAGGTGGCTTTGGTG
GCAGTCGTGGTGGTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGACGG
TGGTTATGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAG
GGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAG
GAGGCGGAGGCGGCTTTGGCGGTGGTAGTGGAAGCAATTTTGGAGGTGGCGGAAGCTACAATGA
TTTTGGCAATTACAACAATCAATCTTCAAATTTTGGACCCATGAAAGGAGGAAATTTTGGAGGC
AGAAGTTCTGGCCCTTATGGTGGTGGAGGCCAATACTTTGCCAAACCACGAAACCAAGGTGGCT
ATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGGTTTTAATTATTACTGCCAGG
GAGGAGTCTGCTACTACAGGCTTATCAGCTCTTAAAAAACCGGGAACTCTTCAGTCCAAGCTCA
TGGCTAAAAGGAACATCCTTAAGAGGACATTTCTCTGAGCCACTCACTGTTCATTTTAACTGCT
ATGCAGTAATCATTAGCTGCTATGCAGCTGAAATTAATCAATTCAGTTTTGTGAATGGACTTTG
GAAAATAAAGACACGTTTAACTTGG

hide sequence

RefSeq Acc Id:

XR_002343825

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	19,485,033 - 19,491,418 (+)	NCBI

Sequence:

show sequence

GGAGTCTACCAATGCCGAACGCGAGGAGGCGGGATAAAAAAGCGAGGCCGAAGGTAGGCTGGCA
GACTCGTTCGTTAGATTACTCCTTTCTGCCCCCGGACGCCGCCGAGTAAGCATCGTTGTAACCT
CCTCCCCACTACCGTCATGTCTAAGTCAGAGTCTCCCAAAGAGCCCGAACAGCTGCGGAAGCTC
TTCATCGGAGGTTTGAGCTTTGAAACAACCGATGAGAGTCTGAGGAGCCATTTTGAGCAATGGG
GAACGCTCACAGACTGTGTGGTAATGAGGGACCCAAACACCAAGCGCTCCAGAGGTTTCGGGTT
TGTCACGTATGCCACTGTGGAGGAGGTGGATGCAGCCATGAATGCAAGGCCGCACAAGGTGGAT
GGAAGAGTTGTGGAACCAAAGAGGGCCGTCTCAAGAGAAGATTCTCAAAGACCTGGTGCCCACT
TAACTGTGAAAAAGATTTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTAAGAGA
TTATTTTGAACAGTATGGGAAAATCGAAGTGATTGAAATCATGACGGACAGGGGCAGTGGCAAA
AAGAGAGGTTTTGCTTTTGTAACTTTTGATGACCATGACTCCGTAGACAAGATTGTCATTCAGA
AATACCACACTGTGAATGGCCACAACTGTGAAGTGAGGAAAGCCCTATCCAAGCAAGAGATGGC
TAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGT
GGTTTTGGTGGAAATGACAACTTTGGTCGTGGGGGAAACTTTAGTGGTCGAGGTGGCTTTGGTG
GCAGTCGTGGTGGTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGACGG
AAGCAATTTTGGAGGTGGCGGAAGCTACAATGATTTTGGCAATTACAACAATCAATCTTCAAAT
TTTGGACCCATGAAAGGAGGAAATTTTGGAGGCAGAAGTTCTGGCCCTTATGGTGGTGGAGGCC
AATACTTTGCCAAACCACGAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGG
CAGTGGCAGAAGGTTTTAATTATTACTGCCAGGGAGGAGTCTGCTACTACAGGCTTATCAGCTC
TTAAAAAACCGGGAACTCTTCAGTCCAAGCTCATGGCTAAAAGGAACATCCTTAAGAGGACATT
TCTCTGAGCCACTCACTGTTCATTTTAACTGCTATGCAGTAATCATTAGCTGCTATGCAGCTGA
AATTAATCAATTCAGTTTTGTGAATGGACTTTGGAAAATAAAGACACGTTTAACTTGG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001070686	(Get FASTA)	NCBI Sequence Viewer
	XP_005663911	(Get FASTA)	NCBI Sequence Viewer
	XP_005663912	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABI96206	(Get FASTA)	NCBI Sequence Viewer
	AIP98386	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000000304
	ENSSSCP00000000304.3
	ENSSSCP00000033484
	ENSSSCP00000033484.1
	ENSSSCP00000061356
	ENSSSCP00000061356.1
	ENSSSCP00000062027.1
	ENSSSCP00015004695.1
	ENSSSCP00015004726.1
	ENSSSCP00015004740.1
	ENSSSCP00015004762.1
	ENSSSCP00025035122.1
	ENSSSCP00030024513.1
	ENSSSCP00030024521.1
	ENSSSCP00030024530.1
	ENSSSCP00030024539.1
	ENSSSCP00035005937.1
	ENSSSCP00035005939.1
	ENSSSCP00035005941.1
	ENSSSCP00035005942.1
	ENSSSCP00035005943.1
	ENSSSCP00040034227.1
	ENSSSCP00045000147.1
	ENSSSCP00045000151.1
	ENSSSCP00045000158.1
	ENSSSCP00045000162.1
	ENSSSCP00050000830.1
	ENSSSCP00050000835.1
	ENSSSCP00050000837.1
	ENSSSCP00050000840.1
	ENSSSCP00055023549.1
	ENSSSCP00055023597.1
	ENSSSCP00055023639.1
	ENSSSCP00060012377.1
	ENSSSCP00060012380.1
	ENSSSCP00060012381.1
	ENSSSCP00070051334.1
	ENSSSCP00070051335.1
	ENSSSCP00070051337.1
	ENSSSCP00070051339.1

RefSeq Acc Id:	XP_005663911 ⟸ XM_005663854
- Peptide Label:	isoform X1
- UniProtKB:	A0A286ZPE3 (UniProtKB/TrEMBL), A0A4X1W4Q9 (UniProtKB/TrEMBL), A0A8D0SQV8 (UniProtKB/TrEMBL), A0A8D1QRD4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT VEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSS QRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGG GPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGGFGGGSGSNFGGGGSYNDFGNYN NQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF hide sequence

RefSeq Acc Id:	XP_005663912 ⟸ XM_005663855
- Peptide Label:	isoform X2
- UniProtKB:	Q06A94 (UniProtKB/TrEMBL), A0A4X1WAJ4 (UniProtKB/TrEMBL), A0A8D1FCB0 (UniProtKB/TrEMBL), A0A8D0IL33 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT VEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSS QRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGG GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF hide sequence

RefSeq Acc Id:

NP_001070686 ⟸ NM_001077218

- UniProtKB:

Q06A94 (UniProtKB/TrEMBL), A0A4X1WAJ4 (UniProtKB/TrEMBL), A0A8D1FCB0 (UniProtKB/TrEMBL), A0A8D0IL33 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT
VEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY
GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSS
QRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGG
GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF

hide sequence

Ensembl Acc Id:

ENSSSCP00000033484 ⟸ ENSSSCT00000058552

Ensembl Acc Id:

ENSSSCP00000061356 ⟸ ENSSSCT00000075652

Ensembl Acc Id:

ENSSSCP00000062027 ⟸ ENSSSCT00000071718

Ensembl Acc Id:

ENSSSCP00000000304 ⟸ ENSSSCT00000000309

Protein Domains

RRM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000000288	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015009000	UniProtKB/TrEMBL
	ENSSSCG00025058694	UniProtKB/TrEMBL
	ENSSSCG00030038573	UniProtKB/TrEMBL
	ENSSSCG00035013598	UniProtKB/TrEMBL
	ENSSSCG00040058332	UniProtKB/TrEMBL
	ENSSSCG00045000237	UniProtKB/TrEMBL
	ENSSSCG00050002130	UniProtKB/TrEMBL
	ENSSSCG00055014979	UniProtKB/TrEMBL
	ENSSSCG00060021320	UniProtKB/TrEMBL
	ENSSSCG00070029980	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000000309	ENTREZGENE
	ENSSSCT00000000309.5	UniProtKB/TrEMBL
	ENSSSCT00000058552	ENTREZGENE
	ENSSSCT00000058552.3	UniProtKB/TrEMBL
	ENSSSCT00000071718.2	UniProtKB/TrEMBL
	ENSSSCT00000075652	ENTREZGENE
	ENSSSCT00000075652.1	UniProtKB/TrEMBL
	ENSSSCT00015011893.1	UniProtKB/TrEMBL
	ENSSSCT00015011973.1	UniProtKB/TrEMBL
	ENSSSCT00015012029.1	UniProtKB/TrEMBL
	ENSSSCT00015012108.1	UniProtKB/TrEMBL
	ENSSSCT00025080785.1	UniProtKB/TrEMBL
	ENSSSCT00030053706.1	UniProtKB/TrEMBL
	ENSSSCT00030053719.1	UniProtKB/TrEMBL
	ENSSSCT00030053736.1	UniProtKB/TrEMBL
	ENSSSCT00030053755.1	UniProtKB/TrEMBL
	ENSSSCT00035017169.1	UniProtKB/TrEMBL
	ENSSSCT00035017173.1	UniProtKB/TrEMBL
	ENSSSCT00035017176.1	UniProtKB/TrEMBL
	ENSSSCT00035017179.1	UniProtKB/TrEMBL
	ENSSSCT00035017182.1	UniProtKB/TrEMBL
	ENSSSCT00040079273.1	UniProtKB/TrEMBL
	ENSSSCT00045000313.1	UniProtKB/TrEMBL
	ENSSSCT00045000321.1	UniProtKB/TrEMBL
	ENSSSCT00045000332.1	UniProtKB/TrEMBL
	ENSSSCT00045000337.1	UniProtKB/TrEMBL
	ENSSSCT00050002647.1	UniProtKB/TrEMBL
	ENSSSCT00050002657.1	UniProtKB/TrEMBL
	ENSSSCT00050002663.1	UniProtKB/TrEMBL
	ENSSSCT00050002671.1	UniProtKB/TrEMBL
	ENSSSCT00055029581.1	UniProtKB/TrEMBL
	ENSSSCT00055029649.1	UniProtKB/TrEMBL
	ENSSSCT00055029704.1	UniProtKB/TrEMBL
	ENSSSCT00060028887.1	UniProtKB/TrEMBL
	ENSSSCT00060028895.1	UniProtKB/TrEMBL
	ENSSSCT00060028900.1	UniProtKB/TrEMBL
	ENSSSCT00070060255.1	UniProtKB/TrEMBL
	ENSSSCT00070060256.1	UniProtKB/TrEMBL
	ENSSSCT00070060258.1	UniProtKB/TrEMBL
	ENSSSCT00070060260.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	HnRNPA1	UniProtKB/TrEMBL
	hnRNPA1/3_RRM2	UniProtKB/TrEMBL
	hnRNPA1_RRM1	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
KEGG Report	ssc:768103	UniProtKB/TrEMBL
NCBI Gene	HNRNPA1	ENTREZGENE
PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1-RELATED	UniProtKB/TrEMBL
	HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN	UniProtKB/TrEMBL
Pfam	HnRNPA1	UniProtKB/TrEMBL
	RRM_1	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A286ZPE3	ENTREZGENE
	A0A4X1W4Q9	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1W4R4_PIG	UniProtKB/TrEMBL
	A0A4X1WAJ4	ENTREZGENE
	A0A4X1WBR7_PIG	UniProtKB/TrEMBL
	A0A5G2QCR1_PIG	UniProtKB/TrEMBL
	A0A8D0IL33	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0MLB9_PIG	UniProtKB/TrEMBL
	A0A8D0SQV8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0YU03_PIG	UniProtKB/TrEMBL
	A0A8D1FCB0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1GA78_PIG	UniProtKB/TrEMBL
	A0A8D1QRD4	ENTREZGENE, UniProtKB/TrEMBL
	Q06A94	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A286ZPE3	UniProtKB/TrEMBL
	A0A4X1WAJ4	UniProtKB/TrEMBL
	A0A5G2QED5	UniProtKB/TrEMBL
	F6Q9I4	UniProtKB/TrEMBL
VGNC ID	VGNC:88918	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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