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Gene: Ribc1 (RIB43A domain with coiled-coils 1) Rattus norvegicus

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Symbol:

Ribc1

Name:

RIB43A domain with coiled-coils 1

RGD ID:

1359621

Description:

Predicted to be involved in flagellated sperm motility. Predicted to be active in axonemal A tubule inner sheath and sperm flagellum. Orthologous to human RIBC1 (RIB43A domain with coiled-coils 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

MGC93902; RIB43A-like with coiled-coils protein 1; similar to RIKEN cDNA 2610028I09

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RIBC1 (RIB43A domain with coiled-coils 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ribc1 (RIB43A domain with coiled-coils 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ribc1 (RIB43A domain with coiled-coils 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RIBC1 (RIB43A domain with coiled-coils 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RIBC1 (RIB43A domain with coiled-coils 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ribc1 (RIB43A domain with coiled-coils 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RIBC1 (RIB43A domain with coiled-coils 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RIBC1 (RIB43A domain with coiled-coils 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ribc1 (RIB43A domain with coiled-coils 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	GNAZ (G protein subunit alpha z)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RIBC1 (RIB43A domain with coiled-coils 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ribc1 (RIB43A domain with coiled-coils 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ribc1 (RIB43A domain with coiled-coils 1)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7264	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	ribc1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	24,571,126 - 24,583,170 (-)	NCBI		GRCr8
mRatBN7.2	X	21,091,717 - 21,103,688 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	21,091,717 - 21,103,200 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	18,568,742 - 18,580,044 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	21,543,520 - 21,554,822 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	21,657,364 - 21,668,667 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	21,699,361 - 21,711,335 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	21,698,011 - 21,710,678 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	21,736,013 - 21,747,819 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	41,491,913 - 41,503,095 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	41,545,383 - 41,556,564 (-)	NCBI
Celera	X	21,367,032 - 21,378,336 (-)	NCBI		Celera
Cytogenetic Map	X	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Atkin Syndrome (ISO)

autistic disorder (ISO)

Cornelia de Lange syndrome 2 (ISO)

non-syndromic X-linked intellectual disability 1 (ISO)

paraplegia (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,3'-diindolylmethane (ISO)

3-chloropropane-1,2-diol (EXP)

4-amino-2,6-dinitrotoluene (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cobalt dichloride (EXP)

Cuprizon (EXP)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

gentamycin (EXP)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP)

pentanal (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

flagellated sperm motility (IEA,ISO,ISS)

Cellular Component

axonemal A tubule inner sheath (IEA,ISO,ISS)

cell projection (IEA)

cilium (IEA)

cytoplasm (IEA)

cytoskeleton (IEA)

motile cilium (IEA)

sperm flagellum (IEA,ISO,ISS)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	null	JRS Domain-based curation
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334

Genomics

Comparative Map Data

Ribc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	24,571,126 - 24,583,170 (-)	NCBI		GRCr8
mRatBN7.2	X	21,091,717 - 21,103,688 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	21,091,717 - 21,103,200 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	18,568,742 - 18,580,044 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	21,543,520 - 21,554,822 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	21,657,364 - 21,668,667 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	21,699,361 - 21,711,335 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	21,698,011 - 21,710,678 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	21,736,013 - 21,747,819 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	41,491,913 - 41,503,095 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	41,545,383 - 41,556,564 (-)	NCBI
Celera	X	21,367,032 - 21,378,336 (-)	NCBI		Celera
Cytogenetic Map	X	q13	NCBI

RIBC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	53,422,873 - 53,431,115 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	53,422,690 - 53,431,120 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	53,449,822 - 53,458,063 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	53,466,564 - 53,474,784 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	53,332,859 - 53,339,797	NCBI
Celera	X	57,281,396 - 57,289,616 (+)	NCBI		Celera
Cytogenetic Map	X	p11.22	NCBI
HuRef	X	50,507,433 - 50,515,692 (+)	NCBI		HuRef
CHM1_1	X	53,440,272 - 53,448,530 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	52,709,049 - 52,717,458 (+)	NCBI		T2T-CHM13v2.0

Ribc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	150,787,576 - 150,799,884 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	150,787,578 - 150,799,291 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	152,004,580 - 152,016,886 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	152,004,582 - 152,016,295 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	148,439,127 - 148,450,838 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	147,345,298 - 147,357,011 (-)	NCBI		MGSCv36	mm8
Celera	X	132,413,743 - 132,425,602 (+)	NCBI		Celera
Cytogenetic Map	X	F3	NCBI
cM Map	X	68.46	NCBI

Ribc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955475	473,349 - 478,399 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955475	468,435 - 486,441 (+)	NCBI	ChiLan1.0	ChiLan1.0

RIBC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	54,821,763 - 54,830,354 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	54,825,367 - 54,833,890 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	45,637,328 - 45,645,769 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	53,744,970 - 53,754,020 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	53,745,499 - 53,755,179 (+)	Ensembl	panpan1.1		panPan2

RIBC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	45,148,251 - 45,165,125 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	45,155,744 - 45,165,123 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	36,682,062 - 36,699,042 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	45,472,987 - 45,489,967 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	45,480,587 - 45,489,965 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	44,968,142 - 44,985,120 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	45,417,806 - 45,434,793 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	45,485,385 - 45,502,362 (+)	NCBI		UU_Cfam_GSD_1.0

Ribc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	38,048,942 - 38,059,873 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936751	388,231 - 399,612 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936751	388,711 - 399,708 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RIBC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	46,208,669 - 46,218,382 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	46,202,213 - 46,218,691 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	51,702,211 - 51,716,904 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RIBC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	49,558,565 - 49,568,058 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	49,563,175 - 49,571,292 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666086	3,511,147 - 3,522,411 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ribc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624909	669,135 - 684,237 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624909	668,547 - 681,592 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ribc1
23 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	87
Count of miRNA genes:	67
Interacting mature miRNAs:	69
Transcripts:	ENSRNOT00000004184
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598873	Memor2	Memory QTL 2	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	X	20990947	41052531	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	1448129	31706553	Rat
1298071	Edpm12	Estrogen-dependent pituitary mass QTL 12	3.2		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	X	2927898	47927898	Rat
2290375	Gluco34	Glucose level QTL 34	2.75		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	20990947	41203591	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1	43491017	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
10755455	Coatc13	Coat color QTL 13		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	4406000	49406000	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	4494549	49494549	Rat
631204	Gluco15	Glucose level QTL 15		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	1623715	22646544	Rat
71116	Niddm16	Non-insulin dependent diabetes mellitus QTL 16	7.81		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	15297802	60297802	Rat

Markers in Region

RH142896

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	21,091,757 - 21,091,896 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	21,699,402 - 21,699,540	NCBI	Rnor6.0
Rnor_5.0	X	21,747,640 - 21,747,778	UniSTS	Rnor5.0
RGSC_v3.4	X	41,491,949 - 41,492,087	UniSTS	RGSC3.4
Celera	X	21,367,068 - 21,367,206	UniSTS
Cytogenetic Map	X	q21	UniSTS

BF403405

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	X	24,571,279 - 24,571,567 (+)	Marker Load Pipeline
mRatBN7.2	X	21,091,870 - 21,092,158 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	21,699,515 - 21,699,802	NCBI	Rnor6.0
Rnor_5.0	X	21,747,378 - 21,747,665	UniSTS	Rnor5.0
RGSC_v3.4	X	41,492,062 - 41,492,349	UniSTS	RGSC3.4
Celera	X	21,367,181 - 21,367,468	UniSTS
Cytogenetic Map	X	q21	UniSTS

RH138828

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	21,091,752 - 21,091,892 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	21,699,397 - 21,699,536	NCBI	Rnor6.0
Rnor_5.0	X	21,747,644 - 21,747,783	UniSTS	Rnor5.0
RGSC_v3.4	X	41,491,944 - 41,492,083	UniSTS	RGSC3.4
Celera	X	21,367,063 - 21,367,202	UniSTS
Cytogenetic Map	X	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC078998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004184 ⟹ ENSRNOP00000004184

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	21,091,717 - 21,103,200 (-)	Ensembl
Rnor_6.0 Ensembl	X	21,699,368 - 21,710,678 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091261 ⟹ ENSRNOP00000071963

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	21,698,011 - 21,710,341 (-)	Ensembl

RefSeq Acc Id:

NM_001007715 ⟹ NP_001007716

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,131 - 24,582,434 (-)	NCBI
mRatBN7.2	X	21,091,722 - 21,103,025 (-)	NCBI
Rnor_6.0	X	21,699,366 - 21,710,678 (-)	NCBI
Rnor_5.0	X	21,736,013 - 21,747,819 (+)	NCBI
RGSC_v3.4	X	41,491,913 - 41,503,095 (-)	RGD
Celera	X	21,367,032 - 21,378,336 (-)	RGD

Sequence:

show sequence

CGGGGCCTGAGCCCACGCTTGCTAAGAAAGAAGTCAGTACAAGGTTCTGCCAGAGCGAGTGGGA
GGCAGACGTTCGGCTGTGAATTTAAAGACTGCTGTTGTACATCAAGAGCCAACTTGGGCCCAGT
CCACTTAAGAGCTTCAAAATTGGAATTCTGTACTGAGAAAGATGTATAAGTTAGACCTTGCACC
AGATCCCAAGGAGCTAGCAGCCATTGAGGCTAGAAGAAATCGTGAAAAGGAACGACAATGCCGA
TTCTTCAATGTGCGGAACCGAGTCATGGGGGTGGATGTGGAAGCCCTCAACTACCAGGTGGAGG
AACGAAAGTTTCGGGAGGCAATAGAGCGAAGCAAAGATATGGCTTATGGTGCCAAGCATGCACA
CTATGATCTGGTAGCACAGATGCTAGAGAAAGAAGAGGCAGAACGAGCATGTCGGCTGTCCAAG
AGAGTGCAGGATTTTCGGGAGCAAAGGCAGCAATTCAAGAATGGACACGAATTCGACTTCTGGG
ATCCAGACCATGTCCAGGAGTTTCAGGTCCCTTATTATGAGAACGAGGCATACTTTGGCCCAGC
AAGCATGCAGTACTTCCTTGGAGAGGACCTGGAGAGGGCCTCACACCTGAGAATGCAGCAGGAA
CAGTTGAGATACAACCTGGAGAAACAGCTGCAGGAGCAACAGGCAGCCAGAGAAGAGGAAGCAC
GAGCAGCTTTGCTCAGTGACCAACTGCGTCTAGCCGCGGACACTCGGGCTGCTGAACTGGCTAG
GCTGGAGGAATCCTGCCGCGCAGCTATGAGGACTGCTATGGCCAATGCCAACAAAGCCCAGGCA
GCTAAGCAAGCCCTGCTGCAGCGCCGTGAACAGCAGCAGCAACAGGAGGCGAACCTCGCAGAGA
TCAAGAAACAAGTCACCAGTGACCTGCTGACCGAGAATCCTCAAGTTGCTCAACGCCCCAGTGC
TCCTCACCGGGTCCTGCCCTATTGTTGGAAGGGCATGACTGCAGAGCAGAGAGCTGCCATCAGG
AAAACCCAAGAAAACCAACGACAAGAGAAAAAGGAACAGCGCCAAGCCGAAAAGCTCGTGGAAG
CCGAGTGGGGAAGCCAAAGCAAACGGTTGGCTGAAGCAGCACTGGAGCTGGAAGAACAGGAGAG
GGAATTGTGTGCAGAATTTCGAAGAGGACTGGGCTCCTTCAACCGGGAGTTAGCTAAGGAACAG
CATGCTCAGCAAAACTATCTGAATTCAGTCATCTACACCAATCAACCAACTTCACACTATTACC
TACAGTTCAACACCAGCAGCCGCTGAACTCAGGATGGTCACCTCCCATCTCACCTATCAATCTC
ACAGGTGGCCAGGAGTCAAAAAATGCTACATACCCCCATTTCTAATCTCAGTAAGAGGGAACTA
ATTCCCCCATTTCTAATCTCAGTAGGAGGGAACTAAGCCCAAACCTCTTTAATAACAATAAAGT
TGTTCACCACAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256800 ⟹ XP_006256862

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,541 (-)	NCBI
mRatBN7.2	X	21,091,717 - 21,103,177 (-)	NCBI
Rnor_6.0	X	21,699,361 - 21,710,830 (-)	NCBI
Rnor_5.0	X	21,736,013 - 21,747,819 (+)	NCBI

Sequence:

show sequence

TTTGTTGCCTGGCTAGAGCACGTGCTGGGCGTTTAGACCCCACCCCCCTTTGTAGTTACGCCGC
AACTGTTGAAGCAGCGGTAACTACGTCGAGGAAGCGTTAGTGACTAGGAGCATTCTGATCACTT
TGGGGGAAAATCAGAGAAGGCAGGCGGGGCCTGAGCCCACGCTTGCTAAGAAAGAAAATTTAAA
GACTGCTGTTGTACATCAAGAGCCAACTTGGGCCCAGTCCACTTAAGAGCTTCAAAATTGGAAT
TCTGTACTGAGAAAGATGTATAAGTTAGACCTTGCACCAGATCCCAAGGAGCTAGCAGCCATTG
AGGCTAGAAGAAATCGTGAAAAGGAACGACAATGCCGATTCTTCAATGTGCGGAACCGAGTCAT
GGGGGTGGATGTGGAAGCCCTCAACTACCAGGTGGAGGAACGAAAGTTTCGGGAGGCAATAGAG
CGAAGCAAAGATATGGCTTATGGTGCCAAGCATGCACACTATGATCTGGTAGCACAGATGCTAG
AGAAAGAAGAGGCAGAACGAGCATGTCGGCTGTCCAAGAGAGTGCAGGATTTTCGGGAGCAAAG
GCAGCAATTCAAGAATGGACACGAATTCGACTTCTGGGATCCAGACCATGTCCAGGAGTTTCAG
GTCCCTTATTATGAGAACGAGGCATACTTTGGCCCAGCAAGCATGCAGTACTTCCTTGGAGAGG
ACCTGGAGAGGGCCTCACACCTGAGAATGCAGCAGGAACAGTTGAGATACAACCTGGAGAAACA
GCTGCAGGAGCAACAGGCAGCCAGAGAAGAGGAAGCACGAGCAGCTTTGCTCAGTGACCAACTG
CGTCTAGCCGCGGACACTCGGGCTGCTGAACTGGCTAGGCTGGAGGAATCCTGCCGCGCAGCTA
TGAGGACTGCTATGGCCAATGCCAACAAAGCCCAGGCAGCTAAGCAAGCCCTGCTGCAGCGCCG
TGAACAGCAGCAGCAACAGGAGGCGAACCTCGCAGAGATCAAGAAACAAGTCACCAGTGACCTG
CTGACCGAGAATCCTCAAGTTGCTCAACGCCCCAGTGCTCCTCACCGGGTCCTGCCCTATTGTT
GGAAGGGCATGACTGCAGAGCAGAGAGCTGCCATCAGGAAAACCCAAGAAAACCAACGACAAGA
GAAAAAGGAACAGCGCCAAGCCGAAAAGCTCGTGGAAGCCGAGTGGGGAAGCCAAAGCAAACGG
TTGGCTGAAGCAGCACTGGAGCTGGAAGAACAGGAGAGGGAATTGTGTGCAGAATTTCGAAGAG
GACTGGGCTCCTTCAACCGGGAGTTAGCTAAGGAACAGCATGCTCAGCAAAACTATCTGAATTC
AGTCATCTACACCAATCAACCAACTTCACACTATTACCTACAGTTCAACACCAGCAGCCGCTGA
ACTCAGGATGGTCACCTCCCATCTCACCTATCAATCTCACAGGTGGCCAGGAGTCAAAAAATGC
TACATACCCCCATTTCTAATCTCAGTAAGAGGGAACTAATTCCCCCATTTCTAATCTCAGTAGG
AGGGAACTAAGCCCAAACCTCTTTAATAACAATAAAGTTGTTCACCACAATGAACAGTA

hide sequence

RefSeq Acc Id:

XM_006256801 ⟹ XP_006256863

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,523 (-)	NCBI
mRatBN7.2	X	21,091,717 - 21,103,177 (-)	NCBI
Rnor_6.0	X	21,699,361 - 21,710,830 (-)	NCBI
Rnor_5.0	X	21,736,013 - 21,747,819 (+)	NCBI

Sequence:

show sequence

TTTGTTGCCTGGCTAGAGCACGTGCTGGGCGTTTAGACCCCACCCCCCTTTGTAGTTACGCCGC
AACTGTTGAAGCAGCGGTAACTACGTCGAGGAAGCGTTAGTGACTAGGAGCATTCTGATCACTT
TGGGGGAAAATCAGAGAAGGCAGGCGGGGCCTGAGCCCACGCTTGCTAAGAAAGAAGTCAGTAC
AAGAATTTAAAGACTGCTGTTGTACATCAAGAGCCAACTTGGGCCCAGTCCACTTAAGAGCTTC
AAAATTGGAATTCTGTACTGAGAAAGATGTATAAGTTAGACCTTGCACCAGATCCCAAGGAGCT
AGCAGCCATTGAGGCTAGAAGAAATCGTGAAAAGGAACGACAATGCCGATTCTTCAATGTGCGG
AACCGAGTCATGGGGGTGGATGTGGAAGCCCTCAACTACCAGGTGGAGGAACGAAAGTTTCGGG
AGGCAATAGAGCGAAGCAAAGATATGGCTTATGGTGCCAAGCATGCACACTATGATCTGGTAGC
ACAGATGCTAGAGAAAGAAGAGGCAGAACGAGCATGTCGGCTGTCCAAGAGAGTGCAGGATTTT
CGGGAGCAAAGGCAGCAATTCAAGAATGGACACGAATTCGACTTCTGGGATCCAGACCATGTCC
AGGAGTTTCAGGTCCCTTATTATGAGAACGAGGCATACTTTGGCCCAGCAAGCATGCAGTACTT
CCTTGGAGAGGACCTGGAGAGGGCCTCACACCTGAGAATGCAGCAGGAACAGTTGAGATACAAC
CTGGAGAAACAGCTGCAGGAGCAACAGGCAGCCAGAGAAGAGGAAGCACGAGCAGCTTTGCTCA
GTGACCAACTGCGTCTAGCCGCGGACACTCGGGCTGCTGAACTGGCTAGGCTGGAGGAATCCTG
CCGCGCAGCTATGAGGACTGCTATGGCCAATGCCAACAAAGCCCAGGCAGCTAAGCAAGCCCTG
CTGCAGCGCCGTGAACAGCAGCAGCAACAGGAGGCGAACCTCGCAGAGATCAAGAAACAAGTCA
CCAGTGACCTGCTGACCGAGAATCCTCAAGTTGCTCAACGCCCCAGTGCTCCTCACCGGGTCCT
GCCCTATTGTTGGAAGGGCATGACTGCAGAGCAGAGAGCTGCCATCAGGAAAACCCAAGAAAAC
CAACGACAAGAGAAAAAGGAACAGCGCCAAGCCGAAAAGCTCGTGGAAGCCGAGTGGGGAAGCC
AAAGCAAACGGTTGGCTGAAGCAGCACTGGAGCTGGAAGAACAGGAGAGGGAATTGTGTGCAGA
ATTTCGAAGAGGACTGGGCTCCTTCAACCGGGAGTTAGCTAAGGAACAGCATGCTCAGCAAAAC
TATCTGAATTCAGTCATCTACACCAATCAACCAACTTCACACTATTACCTACAGTTCAACACCA
GCAGCCGCTGAACTCAGGATGGTCACCTCCCATCTCACCTATCAATCTCACAGGTGGCCAGGAG
TCAAAAAATGCTACATACCCCCATTTCTAATCTCAGTAAGAGGGAACTAATTCCCCCATTTCTA
ATCTCAGTAGGAGGGAACTAAGCCCAAACCTCTTTAATAACAATAAAGTTGTTCACCACAATGA
ACAGTA

hide sequence

RefSeq Acc Id:

XM_006256802 ⟹ XP_006256864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,626 (-)	NCBI
mRatBN7.2	X	21,091,717 - 21,103,166 (-)	NCBI
Rnor_6.0	X	21,699,361 - 21,710,830 (-)	NCBI
Rnor_5.0	X	21,736,013 - 21,747,819 (+)	NCBI

Sequence:

show sequence

TTTGTTGCCTGGCTAGAGCACGTGCTGGGCGTTTAGACCCCACCCCCCTTTGTAGTTACGCCGC
AACTGTTGAAGCAGCGGTAACTACGTCGAGGAAGCAATTTAAAGACTGCTGTTGTACATCAAGA
GCCAACTTGGGCCCAGTCCACTTAAGAGCTTCAAAATTGGAATTCTGTACTGAGAAAGATGTAT
AAGTTAGACCTTGCACCAGATCCCAAGGAGCTAGCAGCCATTGAGGCTAGAAGAAATCGTGAAA
AGGAACGACAATGCCGATTCTTCAATGTGCGGAACCGAGTCATGGGGGTGGATGTGGAAGCCCT
CAACTACCAGGTGGAGGAACGAAAGTTTCGGGAGGCAATAGAGCGAAGCAAAGATATGGCTTAT
GGTGCCAAGCATGCACACTATGATCTGGTAGCACAGATGCTAGAGAAAGAAGAGGCAGAACGAG
CATGTCGGCTGTCCAAGAGAGTGCAGGATTTTCGGGAGCAAAGGCAGCAATTCAAGAATGGACA
CGAATTCGACTTCTGGGATCCAGACCATGTCCAGGAGTTTCAGGTCCCTTATTATGAGAACGAG
GCATACTTTGGCCCAGCAAGCATGCAGTACTTCCTTGGAGAGGACCTGGAGAGGGCCTCACACC
TGAGAATGCAGCAGGAACAGTTGAGATACAACCTGGAGAAACAGCTGCAGGAGCAACAGGCAGC
CAGAGAAGAGGAAGCACGAGCAGCTTTGCTCAGTGACCAACTGCGTCTAGCCGCGGACACTCGG
GCTGCTGAACTGGCTAGGCTGGAGGAATCCTGCCGCGCAGCTATGAGGACTGCTATGGCCAATG
CCAACAAAGCCCAGGCAGCTAAGCAAGCCCTGCTGCAGCGCCGTGAACAGCAGCAGCAACAGGA
GGCGAACCTCGCAGAGATCAAGAAACAAGTCACCAGTGACCTGCTGACCGAGAATCCTCAAGTT
GCTCAACGCCCCAGTGCTCCTCACCGGGTCCTGCCCTATTGTTGGAAGGGCATGACTGCAGAGC
AGAGAGCTGCCATCAGGAAAACCCAAGAAAACCAACGACAAGAGAAAAAGGAACAGCGCCAAGC
CGAAAAGCTCGTGGAAGCCGAGTGGGGAAGCCAAAGCAAACGGTTGGCTGAAGCAGCACTGGAG
CTGGAAGAACAGGAGAGGGAATTGTGTGCAGAATTTCGAAGAGGACTGGGCTCCTTCAACCGGG
AGTTAGCTAAGGAACAGCATGCTCAGCAAAACTATCTGAATTCAGTCATCTACACCAATCAACC
AACTTCACACTATTACCTACAGTTCAACACCAGCAGCCGCTGAACTCAGGATGGTCACCTCCCA
TCTCACCTATCAATCTCACAGGTGGCCAGGAGTCAAAAAATGCTACATACCCCCATTTCTAATC
TCAGTAAGAGGGAACTAATTCCCCCATTTCTAATCTCAGTAGGAGGGAACTAAGCCCAAACCTC
TTTAATAACAATAAAGTTGTTCACCACAATGAACAGTA

hide sequence

RefSeq Acc Id:

XM_006256803 ⟹ XP_006256865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,583,170 (-)	NCBI
mRatBN7.2	X	21,091,717 - 21,103,688 (-)	NCBI
Rnor_6.0	X	21,699,361 - 21,711,335 (-)	NCBI
Rnor_5.0	X	21,736,013 - 21,747,819 (+)	NCBI

Sequence:

show sequence

CCAGCACGTAACTCCGCCAACTGACATTTGGGAAGAGGCTCGAGTTAGGTGTATGCCAAAAGGG
AAAGCAAGCCCCACCAAGAGGATCGGGGAACATTTTAGGGTTCACGATGTCTCAGGTTACATGG
GGAATTTAAAGACTGCTGTTGTACATCAAGAGCCAACTTGGGCCCAGTCCACTTAAGAGCTTCA
AAATTGGAATTCTGTACTGAGAAAGATGTATAAGTTAGACCTTGCACCAGATCCCAAGGAGCTA
GCAGCCATTGAGGCTAGAAGAAATCGTGAAAAGGAACGACAATGCCGATTCTTCAATGTGCGGA
ACCGAGTCATGGGGGTGGATGTGGAAGCCCTCAACTACCAGGTGGAGGAACGAAAGTTTCGGGA
GGCAATAGAGCGAAGCAAAGATATGGCTTATGGTGCCAAGCATGCACACTATGATCTGGTAGCA
CAGATGCTAGAGAAAGAAGAGGCAGAACGAGCATGTCGGCTGTCCAAGAGAGTGCAGGATTTTC
GGGAGCAAAGGCAGCAATTCAAGAATGGACACGAATTCGACTTCTGGGATCCAGACCATGTCCA
GGAGTTTCAGGTCCCTTATTATGAGAACGAGGCATACTTTGGCCCAGCAAGCATGCAGTACTTC
CTTGGAGAGGACCTGGAGAGGGCCTCACACCTGAGAATGCAGCAGGAACAGTTGAGATACAACC
TGGAGAAACAGCTGCAGGAGCAACAGGCAGCCAGAGAAGAGGAAGCACGAGCAGCTTTGCTCAG
TGACCAACTGCGTCTAGCCGCGGACACTCGGGCTGCTGAACTGGCTAGGCTGGAGGAATCCTGC
CGCGCAGCTATGAGGACTGCTATGGCCAATGCCAACAAAGCCCAGGCAGCTAAGCAAGCCCTGC
TGCAGCGCCGTGAACAGCAGCAGCAACAGGAGGCGAACCTCGCAGAGATCAAGAAACAAGTCAC
CAGTGACCTGCTGACCGAGAATCCTCAAGTTGCTCAACGCCCCAGTGCTCCTCACCGGGTCCTG
CCCTATTGTTGGAAGGGCATGACTGCAGAGCAGAGAGCTGCCATCAGGAAAACCCAAGAAAACC
AACGACAAGAGAAAAAGGAACAGCGCCAAGCCGAAAAGCTCGTGGAAGCCGAGTGGGGAAGCCA
AAGCAAACGGTTGGCTGAAGCAGCACTGGAGCTGGAAGAACAGGAGAGGGAATTGTGTGCAGAA
TTTCGAAGAGGACTGGGCTCCTTCAACCGGGAGTTAGCTAAGGAACAGCATGCTCAGCAAAACT
ATCTGAATTCAGTCATCTACACCAATCAACCAACTTCACACTATTACCTACAGTTCAACACCAG
CAGCCGCTGAACTCAGGATGGTCACCTCCCATCTCACCTATCAATCTCACAGGTGGCCAGGAGT
CAAAAAATGCTACATACCCCCATTTCTAATCTCAGTAAGAGGGAACTAATTCCCCCATTTCTAA
TCTCAGTAGGAGGGAACTAAGCCCAAACCTCTTTAATAACAATAAAGTTGTTCACCACAATGAA
CAGTA

hide sequence

RefSeq Acc Id:

XM_006256804 ⟹ XP_006256866

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,417 (-)	NCBI
mRatBN7.2	X	21,091,717 - 21,102,930 (-)	NCBI
Rnor_6.0	X	21,699,361 - 21,710,590 (-)	NCBI
Rnor_5.0	X	21,736,013 - 21,747,819 (+)	NCBI

Sequence:

show sequence

AGTCTAGCCAGCAGCGGGGAGGGGGGAAAGTGCTCCAGCAAAGGATTCAGTCCGGAATGGGAAG
GAGCCCTCGGAAGGGTGGGGGCAGTTTGGACTGGAAGAGGGATCAAAGAGAGGGCTAGAATTTA
AAGACTGCTGTTGTACATCAAGAGCCAACTTGGGCCCAGTCCACTTAAGAGCTTCAAAATTGGA
ATTCTGTACTGAGAAAGATGTATAAGTTAGACCTTGCACCAGATCCCAAGGAGCTAGCAGCCAT
TGAGGCTAGAAGAAATCGTGAAAAGGAACGACAATGCCGATTCTTCAATGTGCGGAACCGAGTC
ATGGGGGTGGATGTGGAAGCCCTCAACTACCAGGTGGAGGAACGAAAGTTTCGGGAGGCAATAG
AGCGAAGCAAAGATATGGCTTATGGTGCCAAGCATGCACACTATGATCTGGTAGCACAGATGCT
AGAGAAAGAAGAGGCAGAACGAGCATGTCGGCTGTCCAAGAGAGTGCAGGATTTTCGGGAGCAA
AGGCAGCAATTCAAGAATGGACACGAATTCGACTTCTGGGATCCAGACCATGTCCAGGAGTTTC
AGGTCCCTTATTATGAGAACGAGGCATACTTTGGCCCAGCAAGCATGCAGTACTTCCTTGGAGA
GGACCTGGAGAGGGCCTCACACCTGAGAATGCAGCAGGAACAGTTGAGATACAACCTGGAGAAA
CAGCTGCAGGAGCAACAGGCAGCCAGAGAAGAGGAAGCACGAGCAGCTTTGCTCAGTGACCAAC
TGCGTCTAGCCGCGGACACTCGGGCTGCTGAACTGGCTAGGCTGGAGGAATCCTGCCGCGCAGC
TATGAGGACTGCTATGGCCAATGCCAACAAAGCCCAGGCAGCTAAGCAAGCCCTGCTGCAGCGC
CGTGAACAGCAGCAGCAACAGGAGGCGAACCTCGCAGAGATCAAGAAACAAGTCACCAGTGACC
TGCTGACCGAGAATCCTCAAGTTGCTCAACGCCCCAGTGCTCCTCACCGGGTCCTGCCCTATTG
TTGGAAGGGCATGACTGCAGAGCAGAGAGCTGCCATCAGGAAAACCCAAGAAAACCAACGACAA
GAGAAAAAGGAACAGCGCCAAGCCGAAAAGCTCGTGGAAGCCGAGTGGGGAAGCCAAAGCAAAC
GGTTGGCTGAAGCAGCACTGGAGCTGGAAGAACAGGAGAGGGAATTGTGTGCAGAATTTCGAAG
AGGACTGGGCTCCTTCAACCGGGAGTTAGCTAAGGAACAGCATGCTCAGCAAAACTATCTGAAT
TCAGTCATCTACACCAATCAACCAACTTCACACTATTACCTACAGTTCAACACCAGCAGCCGCT
GAACTCAGGATGGTCACCTCCCATCTCACCTATCAATCTCACAGGTGGCCAGGAGTCAAAAAAT
GCTACATACCCCCATTTCTAATCTCAGTAAGAGGGAACTAATTCCCCCATTTCTAATCTCAGTA
GGAGGGAACTAAGCCCAAACCTCTTTAATAACAATAAAGTTGTTCACCACAATGAACAGTA

hide sequence

RefSeq Acc Id:

XM_006256805 ⟹ XP_006256867

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,625 (-)	NCBI
mRatBN7.2	X	21,091,717 - 21,103,158 (-)	NCBI
Rnor_6.0	X	21,699,361 - 21,710,840 (-)	NCBI
Rnor_5.0	X	21,736,013 - 21,747,819 (+)	NCBI

Sequence:

show sequence

CTTTTGTTGATTTGTTGCCTGGCTAGAGCACGTGCTGGGCGTTTAGACCCCACCCCCCTTTGTA
GTTACGCCGCAACTGTTGAAGCAGCGAATTTAAAGACTGCTGTTGTACATCAAGAGCCAACTTG
GGCCCAGTCCACTTAAGAGCTTCAAAATTGGAATTCTGTACTGAGAAAGATGTATAAGTTAGAC
CTTGCACCAGATCCCAAGGAGCTAGCAGCCATTGAGGCTAGAAGAAATCGTGAAAAGGAACGAC
AATGCCGATTCTTCAATGTGCGGAACCGAGTCATGGGGGTGGATGTGGAAGCCCTCAACTACCA
GGTGGAGGAACGAAAGTTTCGGGAGGCAATAGAGCGAAGCAAAGATATGGCTTATGGTGCCAAG
CATGCACACTATGATCTGGTAGCACAGATGCTAGAGAAAGAAGAGGCAGAACGAGCATGTCGGC
TGTCCAAGAGAGTGCAGGATTTTCGGGAGCAAAGGCAGCAATTCAAGAATGGACACGAATTCGA
CTTCTGGGATCCAGACCATGTCCAGGAGTTTCAGGTCCCTTATTATGAGAACGAGGCATACTTT
GGCCCAGCAAGCATGCAGTACTTCCTTGGAGAGGACCTGGAGAGGGCCTCACACCTGAGAATGC
AGCAGGAACAGTTGAGATACAACCTGGAGAAACAGCTGCAGGAGCAACAGGCAGCCAGAGAAGA
GGAAGCACGAGCAGCTTTGCTCAGTGACCAACTGCGTCTAGCCGCGGACACTCGGGCTGCTGAA
CTGGCTAGGCTGGAGGAATCCTGCCGCGCAGCTATGAGGACTGCTATGGCCAATGCCAACAAAG
CCCAGGCAGCTAAGCAAGCCCTGCTGCAGCGCCGTGAACAGCAGCAGCAACAGGAGGCGAACCT
CGCAGAGATCAAGAAACAAGTCACCAGTGACCTGCTGACCGAGAATCCTCAAGTTGCTCAACGC
CCCAGTGCTCCTCACCGGGTCCTGCCCTATTGTTGGAAGGGCATGACTGCAGAGCAGAGAGCTG
CCATCAGGAAAACCCAAGAAAACCAACGACAAGAGAAAAAGGAACAGCGCCAAGCCGAAAAGCT
CGTGGAAGCCGAGTGGGGAAGCCAAAGCAAACGGTTGGCTGAAGCAGCACTGGAGCTGGAAGAA
CAGGAGAGGGAATTGTGTGCAGAATTTCGAAGAGGACTGGGCTCCTTCAACCGGGAGTTAGCTA
AGGAACAGCATGCTCAGCAAAACTATCTGAATTCAGTCATCTACACCAATCAACCAACTTCACA
CTATTACCTACAGTTCAACACCAGCAGCCGCTGAACTCAGGATGGTCACCTCCCATCTCACCTA
TCAATCTCACAGGTGGCCAGGAGTCAAAAAATGCTACATACCCCCATTTCTAATCTCAGTAAGA
GGGAACTAATTCCCCCATTTCTAATCTCAGTAGGAGGGAACTAAGCCCAAACCTCTTTAATAAC
AATAAAGTTGTTCACCACAATGAACAGTA

hide sequence

RefSeq Acc Id:

XM_039099815 ⟹ XP_038955743

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,537 (-)	NCBI
mRatBN7.2	X	21,091,717 - 21,103,178 (-)	NCBI

RefSeq Acc Id:

XM_039099816 ⟹ XP_038955744

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,537 (-)	NCBI
mRatBN7.2	X	21,091,717 - 21,103,178 (-)	NCBI

RefSeq Acc Id:

XM_039099817 ⟹ XP_038955745

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,523 (-)	NCBI
mRatBN7.2	X	21,091,717 - 21,103,178 (-)	NCBI

RefSeq Acc Id:

XM_039099818 ⟹ XP_038955746

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,498 (-)	NCBI
mRatBN7.2	X	21,091,717 - 21,103,178 (-)	NCBI

RefSeq Acc Id:

XM_039099820 ⟹ XP_038955748

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,498 (-)	NCBI
mRatBN7.2	X	21,091,717 - 21,103,178 (-)	NCBI

RefSeq Acc Id:

XM_039099821 ⟹ XP_038955749

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,583,098 (-)	NCBI
mRatBN7.2	X	21,091,717 - 21,103,688 (-)	NCBI

RefSeq Acc Id:

XM_039099822 ⟹ XP_038955750

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,522 (-)	NCBI
mRatBN7.2	X	21,091,717 - 21,103,174 (-)	NCBI

RefSeq Acc Id:

XM_063280068 ⟹ XP_063136138

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,530 (-)	NCBI

RefSeq Acc Id:

XM_063280069 ⟹ XP_063136139

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,539 (-)	NCBI

RefSeq Acc Id:

XM_063280071 ⟹ XP_063136141

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,530 (-)	NCBI

RefSeq Acc Id:

XM_063280072 ⟹ XP_063136142

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,571,126 - 24,582,522 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001007716	(Get FASTA)	NCBI Sequence Viewer
	NP_001421099	(Get FASTA)	NCBI Sequence Viewer
	NP_001421101	(Get FASTA)	NCBI Sequence Viewer
	NP_001421103	(Get FASTA)	NCBI Sequence Viewer
	NP_001421105	(Get FASTA)	NCBI Sequence Viewer
	NP_001421107	(Get FASTA)	NCBI Sequence Viewer
	NP_001421109	(Get FASTA)	NCBI Sequence Viewer
	XP_006256862	(Get FASTA)	NCBI Sequence Viewer
	XP_006256863	(Get FASTA)	NCBI Sequence Viewer
	XP_006256864	(Get FASTA)	NCBI Sequence Viewer
	XP_006256865	(Get FASTA)	NCBI Sequence Viewer
	XP_006256866	(Get FASTA)	NCBI Sequence Viewer
	XP_006256867	(Get FASTA)	NCBI Sequence Viewer
	XP_038955743	(Get FASTA)	NCBI Sequence Viewer
	XP_038955744	(Get FASTA)	NCBI Sequence Viewer
	XP_038955745	(Get FASTA)	NCBI Sequence Viewer
	XP_038955746	(Get FASTA)	NCBI Sequence Viewer
	XP_038955748	(Get FASTA)	NCBI Sequence Viewer
	XP_038955749	(Get FASTA)	NCBI Sequence Viewer
	XP_038955750	(Get FASTA)	NCBI Sequence Viewer
	XP_063136138	(Get FASTA)	NCBI Sequence Viewer
	XP_063136139	(Get FASTA)	NCBI Sequence Viewer
	XP_063136141	(Get FASTA)	NCBI Sequence Viewer
	XP_063136142	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH78998	(Get FASTA)	NCBI Sequence Viewer
	EDL86309	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004184
	ENSRNOP00000099215
GenBank Protein	Q6AYL4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001007716 ⟸ NM_001007715

- UniProtKB:

Q6AYL4 (UniProtKB/Swiss-Prot), A6KLB1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MYKLDLAPDPKELAAIEARRNREKERQCRFFNVRNRVMGVDVEALNYQVEERKFREAIERSKDM
AYGAKHAHYDLVAQMLEKEEAERACRLSKRVQDFREQRQQFKNGHEFDFWDPDHVQEFQVPYYE
NEAYFGPASMQYFLGEDLERASHLRMQQEQLRYNLEKQLQEQQAAREEEARAALLSDQLRLAAD
TRAAELARLEESCRAAMRTAMANANKAQAAKQALLQRREQQQQQEANLAEIKKQVTSDLLTENP
QVAQRPSAPHRVLPYCWKGMTAEQRAAIRKTQENQRQEKKEQRQAEKLVEAEWGSQSKRLAEAA
LELEEQERELCAEFRRGLGSFNRELAKEQHAQQNYLNSVIYTNQPTSHYYLQFNTSSR

hide sequence

RefSeq Acc Id:

XP_006256865 ⟸ XM_006256803

- Peptide Label:

isoform X2

- Sequence:

show sequence

MYKLDLAPDPKELAAIEARRNREKERQCRFFNVRNRVMGVDVEALNYQVEERKFREAIERSKDM
AYGAKHAHYDLVAQMLEKEEAERACRLSKRVQDFREQRQQFKNGHEFDFWDPDHVQEFQVPYYE
NEAYFGPASMQYFLGEDLERASHLRMQQEQLRYNLEKQLQEQQAAREEEARAALLSDQLRLAAD
TRAAELARLEESCRAAMRTAMANANKAQAAKQALLQRREQQQQQEANLAEIKKQVTSDLLTENP
QVAQRPSAPHRVLPYCWKGMTAEQRAAIRKTQENQRQEKKEQRQAEKLVEAEWGSQSKRLAEAA
LELEEQERELCAEFRRGLGSFNRELAKEQHAQQNYLNSVIYTNQPTSHYYLQFNTSSR

hide sequence

RefSeq Acc Id:

XP_006256863 ⟸ XM_006256801

- Peptide Label:

isoform X2

- Sequence:

show sequence

MYKLDLAPDPKELAAIEARRNREKERQCRFFNVRNRVMGVDVEALNYQVEERKFREAIERSKDM
AYGAKHAHYDLVAQMLEKEEAERACRLSKRVQDFREQRQQFKNGHEFDFWDPDHVQEFQVPYYE
NEAYFGPASMQYFLGEDLERASHLRMQQEQLRYNLEKQLQEQQAAREEEARAALLSDQLRLAAD
TRAAELARLEESCRAAMRTAMANANKAQAAKQALLQRREQQQQQEANLAEIKKQVTSDLLTENP
QVAQRPSAPHRVLPYCWKGMTAEQRAAIRKTQENQRQEKKEQRQAEKLVEAEWGSQSKRLAEAA
LELEEQERELCAEFRRGLGSFNRELAKEQHAQQNYLNSVIYTNQPTSHYYLQFNTSSR

hide sequence

RefSeq Acc Id:

XP_006256862 ⟸ XM_006256800

- Peptide Label:

isoform X2

- Sequence:

show sequence

MYKLDLAPDPKELAAIEARRNREKERQCRFFNVRNRVMGVDVEALNYQVEERKFREAIERSKDM
AYGAKHAHYDLVAQMLEKEEAERACRLSKRVQDFREQRQQFKNGHEFDFWDPDHVQEFQVPYYE
NEAYFGPASMQYFLGEDLERASHLRMQQEQLRYNLEKQLQEQQAAREEEARAALLSDQLRLAAD
TRAAELARLEESCRAAMRTAMANANKAQAAKQALLQRREQQQQQEANLAEIKKQVTSDLLTENP
QVAQRPSAPHRVLPYCWKGMTAEQRAAIRKTQENQRQEKKEQRQAEKLVEAEWGSQSKRLAEAA
LELEEQERELCAEFRRGLGSFNRELAKEQHAQQNYLNSVIYTNQPTSHYYLQFNTSSR

hide sequence

RefSeq Acc Id:

XP_006256864 ⟸ XM_006256802

- Peptide Label:

isoform X2

- Sequence:

show sequence

MYKLDLAPDPKELAAIEARRNREKERQCRFFNVRNRVMGVDVEALNYQVEERKFREAIERSKDM
AYGAKHAHYDLVAQMLEKEEAERACRLSKRVQDFREQRQQFKNGHEFDFWDPDHVQEFQVPYYE
NEAYFGPASMQYFLGEDLERASHLRMQQEQLRYNLEKQLQEQQAAREEEARAALLSDQLRLAAD
TRAAELARLEESCRAAMRTAMANANKAQAAKQALLQRREQQQQQEANLAEIKKQVTSDLLTENP
QVAQRPSAPHRVLPYCWKGMTAEQRAAIRKTQENQRQEKKEQRQAEKLVEAEWGSQSKRLAEAA
LELEEQERELCAEFRRGLGSFNRELAKEQHAQQNYLNSVIYTNQPTSHYYLQFNTSSR

hide sequence

RefSeq Acc Id:

XP_006256867 ⟸ XM_006256805

- Peptide Label:

isoform X2

- Sequence:

show sequence

MYKLDLAPDPKELAAIEARRNREKERQCRFFNVRNRVMGVDVEALNYQVEERKFREAIERSKDM
AYGAKHAHYDLVAQMLEKEEAERACRLSKRVQDFREQRQQFKNGHEFDFWDPDHVQEFQVPYYE
NEAYFGPASMQYFLGEDLERASHLRMQQEQLRYNLEKQLQEQQAAREEEARAALLSDQLRLAAD
TRAAELARLEESCRAAMRTAMANANKAQAAKQALLQRREQQQQQEANLAEIKKQVTSDLLTENP
QVAQRPSAPHRVLPYCWKGMTAEQRAAIRKTQENQRQEKKEQRQAEKLVEAEWGSQSKRLAEAA
LELEEQERELCAEFRRGLGSFNRELAKEQHAQQNYLNSVIYTNQPTSHYYLQFNTSSR

hide sequence

RefSeq Acc Id:

XP_006256866 ⟸ XM_006256804

- Peptide Label:

isoform X2

- Sequence:

show sequence

MYKLDLAPDPKELAAIEARRNREKERQCRFFNVRNRVMGVDVEALNYQVEERKFREAIERSKDM
AYGAKHAHYDLVAQMLEKEEAERACRLSKRVQDFREQRQQFKNGHEFDFWDPDHVQEFQVPYYE
NEAYFGPASMQYFLGEDLERASHLRMQQEQLRYNLEKQLQEQQAAREEEARAALLSDQLRLAAD
TRAAELARLEESCRAAMRTAMANANKAQAAKQALLQRREQQQQQEANLAEIKKQVTSDLLTENP
QVAQRPSAPHRVLPYCWKGMTAEQRAAIRKTQENQRQEKKEQRQAEKLVEAEWGSQSKRLAEAA
LELEEQERELCAEFRRGLGSFNRELAKEQHAQQNYLNSVIYTNQPTSHYYLQFNTSSR

hide sequence

Ensembl Acc Id:

ENSRNOP00000004184 ⟸ ENSRNOT00000004184

Ensembl Acc Id:

ENSRNOP00000071963 ⟸ ENSRNOT00000091261

RefSeq Acc Id:	XP_038955749 ⟸ XM_039099821
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q0T1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955744 ⟸ XM_039099816
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q0T1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955743 ⟸ XM_039099815
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q0T1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955745 ⟸ XM_039099817
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q0T1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955748 ⟸ XM_039099820
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q0T1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955746 ⟸ XM_039099818
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q0T1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955750 ⟸ XM_039099822
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q0T1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136139 ⟸ XM_063280069
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q0T1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136141 ⟸ XM_063280071
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q0T1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136138 ⟸ XM_063280068
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q0T1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136142 ⟸ XM_063280072
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q0T1 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYL4-F1-model_v2	AlphaFold	Q6AYL4	1-378	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701769

Promoter ID:

EPDNEW_R12293

Type:

multiple initiation site

Name:

Ribc1_1

Description:

RIB43A domain with coiled-coils 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	21,710,746 - 21,710,806	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359621	AgrOrtholog
BioCyc Gene	G2FUF-2719	BioCyc
Ensembl Genes	ENSRNOG00000003081	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000004184	ENTREZGENE
	ENSRNOT00000166338	ENTREZGENE
IMAGE_CLONE	IMAGE:7112763	IMAGE-MGC_LOAD
InterPro	RIB43A	UniProtKB/Swiss-Prot
KEGG Report	rno:317431	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93902	IMAGE-MGC_LOAD
NCBI Gene	317431	ENTREZGENE
PANTHER	PTHR14517	UniProtKB/Swiss-Prot
	RIB43A-LIKE WITH COILED-COILS PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	RIB43A	UniProtKB/Swiss-Prot
PhenoGen	Ribc1	PhenoGen
RatGTEx	ENSRNOG00000003081	RatGTEx
UniProt	A0A8L2Q0T1	ENTREZGENE, UniProtKB/TrEMBL
	A6KLB1	ENTREZGENE, UniProtKB/TrEMBL
	Q6AYL4	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Ribc1	RIB43A domain with coiled-coils 1	MGC93902	similar to RIKEN cDNA 2610028I09	Symbol and Name updated	1299863	APPROVED
2005-07-29	MGC93902	similar to RIKEN cDNA 2610028I09			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar